Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Reverse (-)

19601369 .. 19604551

Gene Structure 3183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGGAATAGCAATAATCCTTGATCTGTTGAGGAAAAACCCAAGTCCTAGTACAGTCCAAGCGTTACACTCTGCTGGGTATTTCTCAGCCAAAGCCGCCGCTTCTGCCGCTGCTGCGTCTGTCGCCGCCGGTGCTCCATATGCTTATAAGGCACTATATGGTAATTTTAGGGTACCGGTTGCCTATTGCGATGCTGGGACGGCATGGTCTGAAGATTATGTTTCTAATATACGAAGTGCATCTCAACGAATCTTTCAGAGTGACTCTCTGAATTACAGTACCAAGGAATACAAAATTGAGTTAAAGCCTCTATTCTCAGCTTTTGAATGGAGGACTCTAACTATGACATCCGTGAGGTCATTTTTAATGTTCTTTTTACCTCTTCTGGAGCCTCGTACAAACTTGGAAGAGGATGATGATGACTTCCTGTCGGACACTGAAGAAGTGCAACCTGTAGATTATGCTGTTCCTCTTAAAAAATCAGTAGTACAAATTATTCGTGAGACTACTGTTGTAACCACGAGACGGATTCTGGAACGAATTTGTGTCCATTATGTTTCAGAGAGAATGGCATGGAAACTTCTCAAAGATGTTCCTAAGTCCGCCACGAGGAAAGCTGGAAGAAGATTGCCTACTTTAGTTTTCTTCTTCAGTGTTAGCAAAACAACTTTTAGAGGACACTTTCTAGGTGTGGCAGCGTCGTGGCTCGTCCAAGTGGGCATTGAAATCTACCGATATTTTTCTCATACGATAAAGTCTAGGGAAGAGGTTGATGACATTGATACGGCAGAACAAGTCAAGATTCTGGGGAAGAAGGTTACAGTTACTACTCTCCGGTGTGGTGCATCACTAGTTTTTGCTTCCATTGGGGCAGGTATTGGTGCCTTGCTCATCCGCCCTTCATCTGGCCAGTGGATTGGCTGTCTTTTGGGGGATTTGGCAGGGCCTTTGATTGTAACAGCTTGCCTTGGGAGAGTTTACCACGCAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.67

Weight (kDa)

8.97

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AasI	GACNNNNNNGTC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	866
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	2 cut(s)	175, 884
AciI	CCGC	7 cut(s)	5, 99, 102, 111, 129, 606, 898
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	3 cut(s)	234, 462, 637
AfaI	GTAC	5 cut(s)	55, 177, 283, 400, 492
AfiI	CCNNNNNNNGG	3 cut(s)	528, 612, 908
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	329, 728
AhdI	GACNNNNNGTC	1 cut(s)	430
AhlI	ACTAGT	1 cut(s)	853
AluBI	AGCT	3 cut(s)	323, 620, 965
AluI	AGCT	3 cut(s)	323, 620, 965
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	500, 520
AoxI	GGCC	2 cut(s)	910, 947
ApeKI	GCWGC	3 cut(s)	113, 116, 698
ApoI	RAATTY	1 cut(s)	543
AsiGI	ACCGGT	1 cut(s)	178
Asp718I	GGTACC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	947
BalI	TGGCCA	1 cut(s)	912
BanI	GGYRCC	2 cut(s)	175, 884
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
BauI	CACGAG	2 cut(s)	523, 610
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	100, 103, 710
BceAI	ACGGC	2 cut(s)	219, 804
BcoDI	GTCTC	2 cut(s)	500, 520
BcuI	ACTAGT	1 cut(s)	853
BfaI	CTAG	4 cut(s)	51, 689, 762, 854
BfmI	CTRYAG	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	866
BisI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
BlsI	GCNGC	7 cut(s)	100, 103, 112, 115, 118, 130, 700
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	947
BmiI	GGNNCC	3 cut(s)	177, 393, 886
BmsI	GCATC	3 cut(s)	184, 251, 857
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
BpmI	CTGGAG	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	285, 970
BsaWI	WCCGGW	2 cut(s)	178, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	528, 612, 908
Bse118I	RCCGGY	2 cut(s)	131, 178
Bse1I	ACTGG	1 cut(s)	913
BseDI	CCNNGG	2 cut(s)	285, 970
BseGI	GGATG	3 cut(s)	350, 421, 894
BseLI	CCNNNNNNNGG	3 cut(s)	528, 612, 908
BseMII	CTCAG	2 cut(s)	102, 333
BseNI	ACTGG	1 cut(s)	913
BseXI	GCAGC	3 cut(s)	100, 103, 710
BseYI	CCCAGC	2 cut(s)	77, 197
BshFI	GGCC	2 cut(s)	912, 949
BshNI	GGYRCC	2 cut(s)	175, 884
BshTI	ACCGGT	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	132, 179, 838
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	3 cut(s)	528, 612, 908
BsmAI	GTCTC	2 cut(s)	500, 520
BsmBI	CGTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	912, 949
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	7 cut(s)	5, 99, 102, 111, 129, 606, 898
BspANI	GGCC	2 cut(s)	912, 949
BspCNI	CTCAG	2 cut(s)	101, 332
BspLI	GGNNCC	3 cut(s)	177, 393, 886
BspMI	ACCTGC	1 cut(s)	866
BspT107I	GGYRCC	2 cut(s)	175, 884
BsrFI	RCCGGY	2 cut(s)	131, 178
BsrI	ACTGG	1 cut(s)	913
BssAI	RCCGGY	2 cut(s)	131, 178
BssECI	CCNNGG	2 cut(s)	285, 970
BssMI	GATC	1 cut(s)	25
BssSI	CACGAG	2 cut(s)	523, 610
BssT1I	CCWWGG	2 cut(s)	285, 970
Bst2BI	CACGAG	2 cut(s)	523, 610
Bst4CI	ACNGT	4 cut(s)	58, 281, 514, 826
Bst6I	CTCTTC	3 cut(s)	390, 405, 762
BstC8I	GCNNGC	1 cut(s)	967
BstDEI	CTNAG	3 cut(s)	88, 319, 600
BstF5I	GGATG	3 cut(s)	350, 421, 894
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	500, 520
BstMBI	GATC	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	100, 103, 710
BstXI	CCANNNNNNTGG	1 cut(s)	920
BsuRI	GGCC	2 cut(s)	912, 949
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	350, 421, 894
BtsIMutI	CAGTG	3 cut(s)	438, 661, 920
BveI	ACCTGC	1 cut(s)	866
Cac8I	GCNNGC	1 cut(s)	967
Cfr10I	RCCGGY	2 cut(s)	131, 178
Cfr13I	GGNCC	1 cut(s)	947
CseI	GACGC	2 cut(s)	108, 690
Csp6I	GTAC	5 cut(s)	54, 176, 282, 399, 491
CspAI	ACCGGT	1 cut(s)	178
CviAII	CATG	2 cut(s)	207, 576
CviQI	GTAC	5 cut(s)	54, 176, 282, 399, 491
DdeI	CTNAG	3 cut(s)	88, 319, 600
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DrdI	GACNNNNNNGTC	1 cut(s)	208
DriI	GACNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	3 cut(s)	390, 405, 762
Eam1105I	GACNNNNNGTC	1 cut(s)	430
EarI	CTCTTC	3 cut(s)	390, 405, 762
EciI	GGCGGA	2 cut(s)	595, 887
Eco130I	CCWWGG	2 cut(s)	285, 970
Eco57I	CTGAAG	3 cut(s)	234, 462, 637
EcoO109I	RGGNCCY	1 cut(s)	947
EcoT14I	CCWWGG	2 cut(s)	285, 970
ErhI	CCWWGG	2 cut(s)	285, 970
Esp3I	CGTCTC	1 cut(s)	520
FaeI	CATG	2 cut(s)	210, 579
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	2 cut(s)	206, 575
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
FokI	GGATG	3 cut(s)	337, 428, 881
Fsp4HI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
FspBI	CTAG	4 cut(s)	51, 689, 762, 854
GluI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
GsaI	CCCAGC	2 cut(s)	81, 201
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	912, 949
HapII	CCGG	3 cut(s)	132, 179, 838
HgaI	GACGC	2 cut(s)	108, 690
Hin1II	CATG	2 cut(s)	210, 579
HinfI	GANTC	5 cut(s)	252, 266, 337, 532, 805
HpaII	CCGG	3 cut(s)	132, 179, 838
Hpy166II	GTNNAC	1 cut(s)	982
Hpy188I	TCNGA	5 cut(s)	214, 261, 273, 436, 565
Hpy188III	TCNNGA	4 cut(s)	389, 503, 536, 802
Hpy8I	GTNNAC	1 cut(s)	982
Hpy99I	CGWCG	1 cut(s)	706
HpyAV	CCTTC	2 cut(s)	811, 912
HpyCH4III	ACNGT	4 cut(s)	58, 281, 514, 826
HpyCH4V	TGCA	3 cut(s)	242, 451, 848
HpyF3I	CTNAG	3 cut(s)	88, 319, 600
Hsp92II	CATG	2 cut(s)	210, 579
KpnI	GGTACC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	142, 391
Lsp1109I	GCAGC	3 cut(s)	100, 103, 710
LweI	GCATC	3 cut(s)	184, 251, 857
MaeI	CTAG	4 cut(s)	51, 689, 762, 854
MaeIII	GTNAC	6 cut(s)	66, 263, 517, 820, 826, 958
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	5 cut(s)	166, 274, 297, 495, 543
MluNI	TGGCCA	1 cut(s)	912
MlyI	GAGTC	2 cut(s)	260, 331
MmeI	TCCRAC	1 cut(s)	414
Mox20I	TGGCCA	1 cut(s)	912
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	3 cut(s)	305, 368, 477
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	3 cut(s)	132, 179, 838
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	210, 579
NlaIV	GGNNCC	3 cut(s)	177, 393, 886
NmuCI	GTSAC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	252, 532, 805
PinAI	ACCGGT	1 cut(s)	178
PkrI	GCNGC	7 cut(s)	100, 103, 112, 115, 118, 130, 700
PleI	GAGTC	2 cut(s)	260, 331
PpsI	GAGTC	2 cut(s)	260, 331
PsiI	TTATAA	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	77, 197
PspN4I	GGNNCC	3 cut(s)	177, 393, 886
PspPI	GGNCC	1 cut(s)	947
RsaI	GTAC	5 cut(s)	55, 177, 283, 400, 492
RsaNI	GTAC	5 cut(s)	54, 176, 282, 399, 491
SaqAI	TTAA	3 cut(s)	305, 368, 477
SatI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	947
SchI	GAGTC	2 cut(s)	260, 331
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	184, 251, 857
SfcI	CTRYAG	1 cut(s)	456
SgrAI	CRCCGGYG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	853
Sse9I	AATT	5 cut(s)	166, 274, 297, 495, 543
SsiI	CCGC	7 cut(s)	5, 99, 102, 111, 129, 606, 898
SspMI	CTAG	4 cut(s)	51, 689, 762, 854
StyI	CCWWGG	2 cut(s)	285, 970
TaaI	ACNGT	4 cut(s)	58, 281, 514, 826
TasI	AATT	5 cut(s)	166, 274, 297, 495, 543
TatI	WGTACW	2 cut(s)	53, 490
TauI	GCSGC	4 cut(s)	101, 104, 113, 131
TfiI	GAWTC	3 cut(s)	252, 532, 805
Tru1I	TTAA	3 cut(s)	305, 368, 477
Tru9I	TTAA	3 cut(s)	305, 368, 477
TscAI	CASTG	3 cut(s)	445, 661, 920
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	113, 116, 698
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	894
TspGWI	ACGGA	2 cut(s)	343, 544
TspRI	CASTG	3 cut(s)	445, 661, 920
XapI	RAATTY	1 cut(s)	543
XspI	CTAG	4 cut(s)	51, 689, 762, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.