pycom11g19840

DDRGK domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0008682
Physical Location & Seq
Reverse (-)
22376644 .. 22380347
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
ATGTTGGCAATTTTTCTTTCCATGCTTCTTTTTTTGGGATTAATTCCACTATATCTATGGAAACGCCGCCAAGATTCTCGACCGCCGCATGAACACGAAGAAGAACCTCAGGTTGCTCAGAGGGAGGCGGTAGTGCGTGCGCCTGGCGGTCGCCGGATGCGTAGGAGGCCGGCTTCTGGAGCAAGCACATCATCAGCTGCTGCACCAGCTGTAGAAGAAACCATTGATGGAAGTGACGAGGAAGATGTTGAGGGTGAGTATGAAGACAAAGCATCCAAGAAGAGGGAAAAGAAGCGTCAAGAGCGGGAAGCACAACGACAAGCTGAACAAGCTGCACGTGAATCAAGGGTAACAAAACAAGACCGCTATGCTGAAATGCGGAGGAGGAAAGATGAGGAGCGTGAGGCACAGGAGCGTCAGCTGGAGGAAGAAGCCAAAGCTCAAAAGGCTAGGGAGGAGGAAGCTGCTGCTTTAGAGTTTGAAAAGTGGAAAGGTGAGTTTTCAATAGACGCTGAAGGTACCACAGAAAATGAAGTGCAGGATGGACGTCAGGATTTGCTGTCTGATTTTGTCGAATACATAAAGAAACATAAATGCATTCCCTTGGAAGATCTTGCTGCTGAATTTAAGTTAAGGACTCAGGAATGCATCAATCGAATTACCAATCTGGAGAGTATGGGGCGACTTTCGGGAGTCATGGACGACAGAGGGAAGTACATATACATCTCCCAAGAAGAGATGCAAGCTGTGGCAGACTACATTAAGCGTCAAGGAAGGGTAAGCATTTCGCATCTCGCTAGCAAGTCCAACCAGTTCATAGACTTGGAGCCCAAAGCGCAGTTTGTTGAAGAAACCGGTACTGGGGCGGAGATAACTGTTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDRGK

Protein Analysis

295

Amino Acids

33.78

Weight (kDa)

5.22

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDRGK PF09756 91 - 274 1.2e-52 DDRGK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 550
Acc65I GGTACC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 518
AccBSI CCGCTC 1 cut(s) 304
AciI CCGC 9 cut(s) 67, 83, 86, 128, 147, 304, 364, 379, 866
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 534
AcvI CACGTG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 547
AfaI GTAC 3 cut(s) 520, 716, 859
AfiI CCNNNNNNNGG 3 cut(s) 176, 282, 861
AgeI ACCGGT 1 cut(s) 854
AgsI TTSAA 3 cut(s) 482, 504, 848
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 8 cut(s) 197, 209, 323, 332, 421, 440, 464, 746
AluI AGCT 8 cut(s) 197, 209, 323, 332, 421, 440, 464, 746
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 6 cut(s) 197, 200, 332, 464, 467, 617
ApoI RAATTY 1 cut(s) 623
AseI ATTAAT 1 cut(s) 41
AsiGI ACCGGT 1 cut(s) 854
Asp718I GGTACC 1 cut(s) 518
AspLEI GCGC 2 cut(s) 142, 838
AsuHPI GGTGA 2 cut(s) 266, 506
AsuNHI GCTAGC 1 cut(s) 797
AxyI CCTNAGG 1 cut(s) 108
BanI GGYRCC 1 cut(s) 518
BanII GRGCYC 1 cut(s) 831
BarI GAAGNNNNNNTAC 2 cut(s) 704, 736
BbrPI CACGTG 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 6 cut(s) 184, 187, 319, 451, 454, 604
BccI CCATC 2 cut(s) 221, 536
BciT130I CCWGG 1 cut(s) 144
BfaI CTAG 2 cut(s) 450, 798
BfmI CTRYAG 1 cut(s) 210
BglII AGATCT 1 cut(s) 610
BisI GCNGC 8 cut(s) 67, 86, 198, 201, 333, 465, 468, 618
BlsI GCNGC 8 cut(s) 68, 87, 199, 202, 334, 466, 469, 619
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 520, 828
BmrFI CCNGG 1 cut(s) 144
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 5 cut(s) 147, 281, 657, 729, 799
BmtI GCTAGC 1 cut(s) 801
BmuI ACTGGG 1 cut(s) 870
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 3 cut(s) 198, 443, 689
BsaAI YACGTR 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 854
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 282, 861
Bse118I RCCGGY 2 cut(s) 169, 854
Bse1I ACTGG 2 cut(s) 811, 865
Bse21I CCTNAGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 3 cut(s) 162, 272, 547
BseLI CCNNNNNNNGG 3 cut(s) 176, 282, 861
BseMII CTCAG 3 cut(s) 122, 131, 653
BseNI ACTGG 2 cut(s) 811, 865
BseRI GAGGAG 3 cut(s) 397, 410, 470
BseXI GCAGC 6 cut(s) 184, 187, 319, 451, 454, 604
BsgI GTGCAG 3 cut(s) 186, 318, 557
Bsh1285I CGRYCG 2 cut(s) 83, 151
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 518
BshTI ACCGGT 1 cut(s) 854
BsiEI CGRYCG 2 cut(s) 83, 151
BsiSI CCGG 3 cut(s) 154, 170, 855
BslI CCNNNNNNNGG 3 cut(s) 176, 282, 861
BsmI GAATGC 2 cut(s) 597, 650
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 831
Bsp143I GATC 1 cut(s) 610
BspACI CCGC 9 cut(s) 67, 83, 86, 128, 147, 304, 364, 379, 866
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 3 cut(s) 121, 130, 652
BspLI GGNNCC 2 cut(s) 520, 828
BspOI GCTAGC 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 169, 854
BsrI ACTGG 2 cut(s) 811, 865
BssAI RCCGGY 2 cut(s) 169, 854
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 1 cut(s) 610
BssNI GRCGYC 1 cut(s) 547
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 877
Bst6I CTCTTC 2 cut(s) 275, 729
BstACI GRCGYC 1 cut(s) 547
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 5 cut(s) 138, 171, 184, 744, 799
BstDEI CTNAG 3 cut(s) 108, 117, 639
BstF5I GGATG 3 cut(s) 162, 272, 547
BstHHI GCGC 2 cut(s) 142, 838
BstKTI GATC 1 cut(s) 613
BstMBI GATC 1 cut(s) 610
BstMCI CGRYCG 2 cut(s) 83, 151
BstMWI GCNNNNNNNGC 7 cut(s) 166, 179, 206, 301, 329, 446, 835
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 6 cut(s) 184, 187, 319, 451, 454, 604
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 3 cut(s) 162, 272, 547
Cac8I GCNNGC 5 cut(s) 138, 171, 184, 744, 799
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 2 cut(s) 142, 838
Cfr10I RCCGGY 2 cut(s) 169, 854
CseI GACGC 4 cut(s) 284, 404, 518, 755
Csp6I GTAC 3 cut(s) 519, 715, 858
CspAI ACCGGT 1 cut(s) 854
CviAII CATG 3 cut(s) 22, 89, 697
CviQI GTAC 3 cut(s) 519, 715, 858
DdeI CTNAG 3 cut(s) 108, 117, 639
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 275, 729
EarI CTCTTC 2 cut(s) 275, 729
EciI GGCGGA 1 cut(s) 881
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 831
Eco57I CTGAAG 1 cut(s) 534
Eco72I CACGTG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 2 cut(s) 599, 650
EcoT38I GRGCYC 1 cut(s) 831
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 3 cut(s) 25, 92, 700
FatI CATG 3 cut(s) 21, 88, 696
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 8 cut(s) 67, 86, 198, 201, 333, 465, 468, 618
FokI GGATG 3 cut(s) 169, 259, 554
FriOI GRGCYC 1 cut(s) 831
Fsp4HI GCNGC 8 cut(s) 67, 86, 198, 201, 333, 465, 468, 618
FspBI CTAG 2 cut(s) 450, 798
GlaI GCGC 2 cut(s) 141, 837
GluI GCNGC 8 cut(s) 67, 86, 198, 201, 333, 465, 468, 618
GsuI CTGGAG 3 cut(s) 198, 443, 689
HaeIII GGCC 1 cut(s) 169
HapII CCGG 3 cut(s) 154, 170, 855
HgaI GACGC 4 cut(s) 284, 404, 518, 755
HhaI GCGC 2 cut(s) 142, 838
Hin1I GRCGYC 1 cut(s) 547
Hin1II CATG 3 cut(s) 25, 92, 700
Hin6I GCGC 2 cut(s) 140, 836
HinP1I GCGC 2 cut(s) 140, 836
HinfI GANTC 4 cut(s) 74, 341, 637, 693
HpaII CCGG 3 cut(s) 154, 170, 855
HphI GGTGA 2 cut(s) 266, 506
Hpy188I TCNGA 2 cut(s) 120, 565
Hpy188III TCNNGA 7 cut(s) 78, 177, 299, 551, 641, 668, 690
HpyAV CCTTC 2 cut(s) 509, 768
HpyCH4III ACNGT 1 cut(s) 877
HpyCH4IV ACGT 2 cut(s) 337, 547
HpyCH4V TGCA 6 cut(s) 203, 335, 538, 597, 648, 742
HpyF10VI GCNNNNNNNGC 7 cut(s) 166, 179, 206, 301, 329, 446, 835
HpyF3I CTNAG 3 cut(s) 108, 117, 639
HpySE526I ACGT 2 cut(s) 337, 547
Hsp92I GRCGYC 1 cut(s) 547
Hsp92II CATG 3 cut(s) 25, 92, 700
HspAI GCGC 2 cut(s) 140, 836
KpnI GGTACC 1 cut(s) 522
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 610
LmnI GCTCC 4 cut(s) 179, 397, 412, 826
Lsp1109I GCAGC 6 cut(s) 184, 187, 319, 451, 454, 604
LweI GCATC 5 cut(s) 147, 281, 657, 729, 799
MaeI CTAG 2 cut(s) 450, 798
MaeII ACGT 2 cut(s) 337, 547
MaeIII GTNAC 2 cut(s) 233, 349
MalI GATC 1 cut(s) 612
MbiI CCGCTC 1 cut(s) 304
MboI GATC 1 cut(s) 610
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 1 cut(s) 831
MluCI AATT 4 cut(s) 9, 42, 623, 657
MlyI GAGTC 2 cut(s) 631, 702
MmeI TCCRAC 1 cut(s) 831
Mph1103I ATGCAT 2 cut(s) 599, 650
MroNI GCCGGC 1 cut(s) 169
MseI TTAA 4 cut(s) 41, 627, 632, 762
MspA1I CMGCKG 3 cut(s) 197, 209, 421
MspI CCGG 3 cut(s) 154, 170, 855
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 2 cut(s) 597, 650
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 7 cut(s) 166, 179, 206, 301, 329, 446, 835
NaeI GCCGGC 1 cut(s) 171
NdeII GATC 1 cut(s) 610
NgoMIV GCCGGC 1 cut(s) 169
NheI GCTAGC 1 cut(s) 797
NlaIII CATG 3 cut(s) 25, 92, 700
NlaIV GGNNCC 2 cut(s) 520, 828
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 2 cut(s) 599, 650
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 2 cut(s) 597, 650
PdiI GCCGGC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 74, 341
PinAI ACCGGT 1 cut(s) 854
PkrI GCNGC 8 cut(s) 68, 87, 199, 202, 334, 466, 469, 619
PleI GAGTC 2 cut(s) 631, 701
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
PpsI GAGTC 2 cut(s) 631, 701
Ppu21I YACGTR 1 cut(s) 338
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 142
PspCI CACGTG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 520, 828
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 610
PvuII CAGCTG 3 cut(s) 197, 209, 421
RsaI GTAC 3 cut(s) 520, 716, 859
RsaNI GTAC 3 cut(s) 519, 715, 858
SaqAI TTAA 4 cut(s) 41, 627, 632, 762
SatI GCNGC 8 cut(s) 67, 86, 198, 201, 333, 465, 468, 618
Sau3AI GATC 1 cut(s) 610
SchI GAGTC 2 cut(s) 631, 702
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 831
SfaNI GCATC 5 cut(s) 147, 281, 657, 729, 799
SfcI CTRYAG 1 cut(s) 210
Sse9I AATT 4 cut(s) 9, 42, 623, 657
SsiI CCGC 9 cut(s) 67, 83, 86, 128, 147, 304, 364, 379, 866
SspMI CTAG 2 cut(s) 450, 798
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 877
TaiI ACGT 2 cut(s) 340, 550
TaqI TCGA 3 cut(s) 79, 573, 655
TasI AATT 4 cut(s) 9, 42, 623, 657
TatI WGTACW 1 cut(s) 714
TauI GCSGC 2 cut(s) 69, 88
TfiI GAWTC 2 cut(s) 74, 341
Tru1I TTAA 4 cut(s) 41, 627, 632, 762
Tru9I TTAA 4 cut(s) 41, 627, 632, 762
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 6 cut(s) 197, 200, 332, 464, 467, 617
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 4 cut(s) 105, 276, 546, 805
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XspI CTAG 2 cut(s) 450, 798
ZraI GACGTC 1 cut(s) 548
Zsp2I ATGCAT 2 cut(s) 599, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.