pycom11g22080

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010543
Physical Location & Seq
Forward (+)
25100361 .. 25101137
777 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
ATGGAATACACCACAAGCTCAAGGCCTCAAGAATTCAGAGAGAAGCCCTATTCGTATTCCCCCATAAACTCGCCGAGAACCAACAACAATGGCACGGCCACCAACGCCAGCGTCTGCAGCAGCAGCAGCAGCTCGGCGGTGGCGGCTCAAATCCCGACAACTCTGAAAGTCTCAACTCCCAGATCTGACTCCAATCCCTACCCGACAACCTTCGTCCAAGCTGATTCCTCGAACTTCAAACATGTTGTCCAAATGCTCACCGGCTCCTCGGAAACCGTCACTCACCAGTCCTCCCCTAAACCCACCACCGCCACCCACCACCACCATCATCAAGATCCAACAATTTTGCCACCTTCCAACAAAAACTTCAACATCCCACCAATCAAAACCGCCCCACCAAAAAAGCAGGGCTTCAAGCTCTACGAGCGGAGGAGCACCAATCTCAAAAACACGCTCATGATCAACACCCTCATCCCCAACTTCCAATCGGCTTCTGGGTATTCGCCACGCCACCAGGAGATCCTGTCCCCGAGCTTGCTTGACTTCCCGTCCCTCACCCTCAGCCCAGTGACGCCGTTGAACGACGACCCCTTCGACAAGTCGGCGGCGTCGCCGTCACTTGGGAACTCTTCGTCGGAGGAGGACAGGGCGATCGCGGAGAAAGGGTTTTACTTGCACCCGTCGCCGAGAGCTACGACGACTCCGAGAGACCAAGAGCCGCGGCTTCTGCCTCTGTTTCCGGTCACTTCACCGAGAGTTTCTGGGTCTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

259

Amino Acids

28.14

Weight (kDa)

9.32

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 66 - 92 3.3e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 427
AccII CGCG 2 cut(s) 656, 721
AciI CCGC 9 cut(s) 137, 143, 309, 390, 427, 605, 656, 719, 721
AclWI GGATC 2 cut(s) 329, 514
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 32
AcyI GRCGYC 2 cut(s) 572, 608
AfiI CCNNNNNNNGG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 238, 370, 415, 580
AhdI GACNNNNNGTC 1 cut(s) 547
AjnI CCWGG 1 cut(s) 513
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 6 cut(s) 18, 132, 221, 418, 534, 692
AluI AGCT 6 cut(s) 18, 132, 221, 418, 534, 692
Alw21I GWGCWC 1 cut(s) 437
Alw26I GTCTC 2 cut(s) 175, 702
AlwI GGATC 2 cut(s) 329, 514
AlwNI CAGNNNCTG 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 529
AoxI GGCC 2 cut(s) 23, 96
ApeKI GCWGC 5 cut(s) 117, 120, 123, 126, 129
ApoI RAATTY 1 cut(s) 32
ArsI GACNNNNNNTTYG 4 cut(s) 231, 263, 575, 607
AsiSI GCGATCGC 1 cut(s) 654
AsuHPI GGTGA 4 cut(s) 250, 275, 547, 741
AvaI CYCGRG 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 437
BbvCI CCTCAGC 1 cut(s) 560
BbvI GCAGC 5 cut(s) 129, 132, 135, 138, 141
BccI CCATC 1 cut(s) 333
BceAI ACGGC 3 cut(s) 111, 559, 598
BciT130I CCWGG 1 cut(s) 515
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 2 cut(s) 175, 702
BfmI CTRYAG 1 cut(s) 115
BglII AGATCT 1 cut(s) 182
BisI GCNGC 9 cut(s) 118, 121, 124, 127, 130, 144, 606, 719, 722
BlsI GCNGC 9 cut(s) 119, 122, 125, 128, 131, 145, 607, 720, 723
Bme1390I CCNGG 1 cut(s) 515
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 529
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 515
BmrI ACTGGG 1 cut(s) 560
BmuI ACTGGG 1 cut(s) 560
BpiI GAAGAC 1 cut(s) 759
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 2 cut(s) 4, 12
BsaHI GRCGYC 2 cut(s) 572, 608
BsaI GGTCTC 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 267, 719
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 8 cut(s) 275, 305, 509, 539, 650, 680, 685, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 286, 566
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 2 cut(s) 267, 719
BseGI GGATG 2 cut(s) 372, 471
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMII CTCAG 1 cut(s) 574
BseNI ACTGG 2 cut(s) 286, 566
BseRI GAGGAG 3 cut(s) 256, 445, 653
BseXI GCAGC 5 cut(s) 129, 132, 135, 138, 141
Bsh1236I CGCG 2 cut(s) 656, 721
Bsh1285I CGRYCG 1 cut(s) 654
BshFI GGCC 2 cut(s) 25, 98
BsiEI CGRYCG 1 cut(s) 654
BsiHKAI GWGCWC 1 cut(s) 437
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 2 cut(s) 261, 740
BslFI GGGAC 2 cut(s) 511, 535
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 175, 702
BsmFI GGGAC 2 cut(s) 511, 535
BsnI GGCC 2 cut(s) 25, 98
Bso31I GGTCTC 1 cut(s) 702
BsoBI CYCGRG 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 437
Bsp143I GATC 5 cut(s) 182, 334, 459, 519, 651
BspACI CCGC 9 cut(s) 137, 143, 309, 390, 427, 605, 656, 719, 721
BspANI GGCC 2 cut(s) 25, 98
BspCNI CTCAG 1 cut(s) 573
BspFNI CGCG 2 cut(s) 656, 721
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 2 cut(s) 329, 514
BspTNI GGTCTC 1 cut(s) 702
BsrBI CCGCTC 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 2 cut(s) 286, 566
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 267, 719
BssMI GATC 5 cut(s) 182, 334, 459, 519, 651
BssNI GRCGYC 2 cut(s) 572, 608
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 634
BstACI GRCGYC 2 cut(s) 572, 608
BstC8I GCNNGC 2 cut(s) 109, 536
BstDEI CTNAG 1 cut(s) 560
BstDSI CCRYGG 1 cut(s) 719
BstF5I GGATG 2 cut(s) 372, 471
BstFNI CGCG 2 cut(s) 656, 721
BstKTI GATC 5 cut(s) 185, 337, 462, 522, 654
BstMAI GTCTC 2 cut(s) 175, 702
BstMBI GATC 5 cut(s) 182, 334, 459, 519, 651
BstMCI CGRYCG 1 cut(s) 654
BstMWI GCNNNNNNNGC 9 cut(s) 104, 117, 123, 126, 129, 143, 424, 682, 727
BstNI CCWGG 1 cut(s) 515
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 513
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 2 cut(s) 656, 721
BstV1I GCAGC 5 cut(s) 129, 132, 135, 138, 141
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 3 cut(s) 182, 334, 519
BstYI RGATCY 3 cut(s) 182, 334, 519
BsuRI GGCC 2 cut(s) 25, 98
BtgI CCRYGG 1 cut(s) 719
BtsCI GGATG 2 cut(s) 372, 471
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 109, 536
CaiI CAGNNNCTG 1 cut(s) 114
CciI TCATGA 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 260
Cfr42I CCGCGG 1 cut(s) 722
CseI GACGC 3 cut(s) 100, 580, 597
CviAII CATG 2 cut(s) 242, 457
DdeI CTNAG 1 cut(s) 560
DpnI GATC 5 cut(s) 184, 336, 461, 521, 653
DpnII GATC 5 cut(s) 182, 334, 459, 519, 651
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 634
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 634
Eco147I AGGCCT 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 513
FaeI CATG 2 cut(s) 245, 460
FaiI YATR 3 cut(s) 65, 243, 458
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 2 cut(s) 511, 535
FatI CATG 2 cut(s) 241, 456
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 9 cut(s) 118, 121, 124, 127, 130, 144, 606, 719, 722
FokI GGATG 2 cut(s) 359, 458
Fsp4HI GCNGC 9 cut(s) 118, 121, 124, 127, 130, 144, 606, 719, 722
GluI GCNGC 9 cut(s) 118, 121, 124, 127, 130, 144, 606, 719, 722
HaeIII GGCC 2 cut(s) 25, 98
HapII CCGG 2 cut(s) 261, 740
HgaI GACGC 3 cut(s) 100, 580, 597
Hin1I GRCGYC 2 cut(s) 572, 608
Hin1II CATG 2 cut(s) 245, 460
HinfI GANTC 3 cut(s) 188, 224, 700
HpaII CCGG 2 cut(s) 261, 740
HphI GGTGA 4 cut(s) 250, 275, 547, 741
Hpy188I TCNGA 6 cut(s) 38, 165, 187, 271, 637, 705
Hpy188III TCNNGA 5 cut(s) 29, 154, 332, 457, 774
Hpy99I CGWCG 5 cut(s) 587, 613, 637, 685, 700
HpyAV CCTTC 3 cut(s) 220, 363, 601
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 117, 676
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 117, 123, 126, 129, 143, 424, 682, 727
HpyF3I CTNAG 1 cut(s) 560
Hsp92I GRCGYC 2 cut(s) 572, 608
Hsp92II CATG 2 cut(s) 245, 460
Ksp22I TGATCA 1 cut(s) 459
KspI CCGCGG 1 cut(s) 722
Kzo9I GATC 5 cut(s) 182, 334, 459, 519, 651
LmnI GCTCC 2 cut(s) 269, 432
Lsp1109I GCAGC 5 cut(s) 129, 132, 135, 138, 141
MaeIII GTNAC 4 cut(s) 277, 568, 615, 742
MalI GATC 5 cut(s) 184, 336, 461, 521, 653
MbiI CCGCTC 1 cut(s) 427
MboI GATC 5 cut(s) 182, 334, 459, 519, 651
MboII GAAGA 3 cut(s) 621, 759, 762
MflI RGATCY 3 cut(s) 182, 334, 519
MhlI GDGCHC 1 cut(s) 437
MluCI AATT 2 cut(s) 32, 342
MlyI GAGTC 2 cut(s) 182, 694
MmeI TCCRAC 3 cut(s) 362, 381, 615
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 721
MspI CCGG 2 cut(s) 261, 740
MspR9I CCNGG 1 cut(s) 515
MvaI CCWGG 1 cut(s) 515
MvnI CGCG 2 cut(s) 656, 721
MwoI GCNNNNNNNGC 9 cut(s) 104, 117, 123, 126, 129, 143, 424, 682, 727
NdeII GATC 5 cut(s) 182, 334, 459, 519, 651
NlaIII CATG 2 cut(s) 245, 460
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 3 cut(s) 99, 113, 711
NmuCI GTSAC 4 cut(s) 277, 568, 615, 742
NspI RCATGY 1 cut(s) 245
PagI TCATGA 1 cut(s) 456
PceI AGGCCT 1 cut(s) 25
PciI ACATGT 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 591, 701
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 9 cut(s) 119, 122, 125, 128, 131, 145, 607, 720, 723
Ple19I CGATCG 1 cut(s) 654
PleI GAGTC 2 cut(s) 182, 694
PpsI GAGTC 2 cut(s) 182, 694
PscI ACATGT 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 513
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 114
PsuI RGATCY 3 cut(s) 182, 334, 519
PvuI CGATCG 1 cut(s) 654
RgaI GCGATCGC 1 cut(s) 654
RseI CAYNNNNRTG 1 cut(s) 455
SacII CCGCGG 1 cut(s) 722
SatI GCNGC 9 cut(s) 118, 121, 124, 127, 130, 144, 606, 719, 722
Sau3AI GATC 5 cut(s) 182, 334, 459, 519, 651
SchI GAGTC 2 cut(s) 182, 694
ScrFI CCNGG 1 cut(s) 515
SduI GDGCHC 1 cut(s) 437
SetI ASST 8 cut(s) 20, 134, 212, 223, 355, 420, 536, 694
SfaAI GCGATCGC 1 cut(s) 654
SfcI CTRYAG 1 cut(s) 115
Sfr303I CCGCGG 1 cut(s) 722
SgfI GCGATCGC 1 cut(s) 654
SgrBI CCGCGG 1 cut(s) 722
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 19, 27
SmoI CTYRAG 2 cut(s) 19, 27
Sse9I AATT 2 cut(s) 32, 342
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 9 cut(s) 137, 143, 309, 390, 427, 605, 656, 719, 721
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 230, 594
TasI AATT 2 cut(s) 32, 342
TauI GCSGC 4 cut(s) 146, 608, 721, 724
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 4 cut(s) 277, 568, 615, 742
TseI GCWGC 5 cut(s) 117, 120, 123, 126, 129
Tsp45I GTSAC 4 cut(s) 277, 568, 615, 742
TspRI CASTG 1 cut(s) 573
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.