pycom11g23830

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015021
Physical Location & Seq
Reverse (-)
26840881 .. 26842370
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGAAGATACAGTGCAACGTTTGCGAGGCGGCGGAGGCGAACGTCCTCTGCTGCGCCGACGAGGCGGCGCTGTGCTGGGCATGCGACGAGAAGGTTCACAAAGCGAACAAGCTCGCGAGCAAGCACCAGAGGGTTCCTCTGTGCTCCTCCCACATGCCCAAGTGCGATATCTGCCAGGAGGCAGTTGGGTACTTTTTCTGCTTAGAAGATCGAGCTTTGCTGTGTAGAAAATGTGATGTATCTGTTCACACGGCTAATAGCTTTGTGTCGGCTCACCGGAGGTTCTTGCTGACCGGAATCAAGGTTGGGCCGGAGCCAGCTGAGCCGGATTCCGGCGGAGTTAATGGGGTTTGTGTTGGGGCGTCTTCTACTGTGAAGTTGCATTCTGGGTCTGCCTCTGTGTCTAGATGTGAAACTCATAACCCGTTGCCGGTGGAGTGCAAGGCGGGCGCGCCGCCCGGTGGAGGGATATCGTTTAACGGGGGTTCTGCAGCTGGGAGTGTTCCACAATGTTATATAGATGAGTTTCTTGGATTCTCTGATCTTGATCAGAGCTTTGACTACATTGATAATGGATCTTCAAAGGCTGACTGCAGTAAACTTGGAGGGTATGACTCGCCAGTTTTAAGATCATCTGTGGAGGAATTGGAAGACTATGAGTGCATAGGTGAGGTGCCAGAGACCTCATGGATGGTGCCACAGGTACCTTCCCCGCCTACAGCATCGGGACTCTACTGGCCCAAAAGTTTTCAGAATCTGTCCGATTCTTCTACAACGTTTGTTCCAGACATATGCCACTCACAAATGCAAAACTCTCTTCGTTCCCAACATAATGGTACTATCTCAAAACGTCGTAGGCAATTCTAG

Protein Analysis

289

Amino Acids

30.98

Weight (kDa)

5.58

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 52 - 91 4.3e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10240
fragaria_vesca FvH4_3g17750
malus_domestica MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica Prupe.4G156600_v2.0.a1
pyrus_communis pycom03g19640 pycom11g23830
rosa_chinensis RchiOBHm_Chr5g0029541
rosa_laevigata RLG00000033177
rosa_multiflora Rmu_sc0000210.1_g000014
rosa_roxburghii Rroxscaffold_1G00050400
rosa_samantha Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana Rw5G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 703
AccB1I GGYRCC 3 cut(s) 673, 694, 703
AccII CGCG 2 cut(s) 116, 452
AciI CCGC 7 cut(s) 29, 32, 65, 336, 446, 455, 713
AclI AACGTT 2 cut(s) 18, 776
AclWI GGATC 1 cut(s) 583
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 3 cut(s) 191, 705, 838
AfiI CCNNNNNNNGG 5 cut(s) 332, 430, 461, 464, 465
AgsI TTSAA 1 cut(s) 582
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 6 cut(s) 112, 215, 261, 320, 494, 555
AluI AGCT 6 cut(s) 112, 215, 261, 320, 494, 555
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 674
AlwI GGATC 1 cut(s) 583
AlwNI CAGNNNCTG 1 cut(s) 757
AoxI GGCC 2 cut(s) 308, 737
ApeKI GCWGC 2 cut(s) 51, 491
AscI GGCGCGCC 1 cut(s) 450
Asp718I GGTACC 1 cut(s) 703
AspLEI GCGC 4 cut(s) 56, 70, 452, 454
AspS9I GGNCC 2 cut(s) 308, 738
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 2 cut(s) 266, 680
BanI GGYRCC 3 cut(s) 673, 694, 703
BbsI GAAGAC 2 cut(s) 357, 657
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 38, 503
BccI CCATC 1 cut(s) 685
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 674
BfaI CTAG 2 cut(s) 405, 865
BfmI CTRYAG 3 cut(s) 489, 592, 717
BfoI RGCGCY 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 5 cut(s) 30, 52, 66, 455, 492
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 5 cut(s) 31, 53, 67, 456, 493
Bme1390I CCNGG 2 cut(s) 176, 459
BmgT120I GGNCC 2 cut(s) 308, 738
BmiI GGNNCC 5 cut(s) 135, 315, 675, 696, 705
BmrFI CCNGG 2 cut(s) 176, 459
BmsI GCATC 1 cut(s) 731
BpiI GAAGAC 2 cut(s) 357, 657
BplI GAGNNNNNCTC 2 cut(s) 121, 153
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 674
BsaWI WCCGGW 2 cut(s) 276, 293
Bsc4I CCNNNNNNNGG 5 cut(s) 332, 430, 461, 464, 465
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 620, 740
Bse8I GATNNNNATC 1 cut(s) 546
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 696
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 5 cut(s) 332, 430, 461, 464, 465
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 620, 740
BsePI GCGCGC 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 38, 503
BseYI CCCAGC 2 cut(s) 75, 494
Bsh1236I CGCG 2 cut(s) 116, 452
BshFI GGCC 2 cut(s) 310, 739
BshNI GGYRCC 3 cut(s) 673, 694, 703
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 7 cut(s) 277, 294, 311, 326, 333, 431, 459
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 5 cut(s) 332, 430, 461, 464, 465
BsmAI GTCTC 1 cut(s) 674
BsmFI GGGAC 1 cut(s) 741
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 310, 739
Bso31I GGTCTC 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 5 cut(s) 208, 541, 547, 575, 629
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp68I TCGCGA 1 cut(s) 116
BspACI CCGC 7 cut(s) 29, 32, 65, 336, 446, 455, 713
BspANI GGCC 2 cut(s) 310, 739
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 2 cut(s) 116, 452
BspLI GGNNCC 5 cut(s) 135, 315, 675, 696, 705
BspMAI CTGCAG 2 cut(s) 493, 596
BspPI GGATC 1 cut(s) 583
BspT107I GGYRCC 3 cut(s) 673, 694, 703
BspTNI GGTCTC 1 cut(s) 674
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 2 cut(s) 620, 740
BssAI RCCGGY 1 cut(s) 430
BssHII GCGCGC 1 cut(s) 450
BssMI GATC 5 cut(s) 208, 541, 547, 575, 629
BssNI GRCGYC 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 12, 373
Bst6I CTCTTC 1 cut(s) 822
BstACI GRCGYC 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 21
BstC8I GCNNGC 7 cut(s) 82, 114, 118, 122, 318, 448, 452
BstDEI CTNAG 2 cut(s) 202, 321
BstF5I GGATG 1 cut(s) 696
BstFNI CGCG 2 cut(s) 116, 452
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 4 cut(s) 56, 70, 452, 454
BstKTI GATC 5 cut(s) 211, 544, 550, 578, 632
BstMAI GTCTC 1 cut(s) 674
BstMBI GATC 5 cut(s) 208, 541, 547, 575, 629
BstMWI GCNNNNNNNGC 7 cut(s) 21, 35, 62, 81, 171, 322, 447
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 2 cut(s) 84, 157
BstSCI CCNGG 2 cut(s) 174, 457
BstSFI CTRYAG 3 cut(s) 489, 592, 717
BstUI CGCG 2 cut(s) 116, 452
BstV1I GCAGC 2 cut(s) 38, 503
BstV2I GAAGAC 2 cut(s) 357, 657
BstX2I RGATCY 1 cut(s) 575
BstXI CCANNNNNNTGG 1 cut(s) 833
BstYI RGATCY 1 cut(s) 575
BsuRI GGCC 2 cut(s) 310, 739
BtsCI GGATG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 17
BtuMI TCGCGA 1 cut(s) 116
Cac8I GCNNGC 7 cut(s) 82, 114, 118, 122, 318, 448, 452
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 4 cut(s) 56, 70, 452, 454
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 308, 738
CseI GACGC 1 cut(s) 351
Csp6I GTAC 3 cut(s) 190, 704, 837
CviAII CATG 3 cut(s) 81, 154, 687
CviQI GTAC 3 cut(s) 190, 704, 837
DdeI CTNAG 2 cut(s) 202, 321
DpnI GATC 5 cut(s) 210, 543, 549, 577, 631
DpnII GATC 5 cut(s) 208, 541, 547, 575, 629
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
EciI GGCGGA 2 cut(s) 47, 351
Eco31I GGTCTC 1 cut(s) 674
Eco32I GATATC 2 cut(s) 169, 471
EcoRII CCWGG 1 cut(s) 174
EcoRV GATATC 2 cut(s) 169, 471
FaeI CATG 3 cut(s) 84, 157, 690
FaqI GGGAC 1 cut(s) 741
FatI CATG 3 cut(s) 80, 153, 686
FauI CCCGC 2 cut(s) 439, 720
FauNDI CATATG 1 cut(s) 791
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 30, 52, 66, 455, 492
FokI GGATG 1 cut(s) 703
Fsp4HI GCNGC 5 cut(s) 30, 52, 66, 455, 492
FspBI CTAG 2 cut(s) 405, 865
GlaI GCGC 4 cut(s) 55, 69, 451, 453
GluI GCNGC 5 cut(s) 30, 52, 66, 455, 492
GsaI CCCAGC 2 cut(s) 79, 498
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 2 cut(s) 310, 739
HapII CCGG 7 cut(s) 277, 294, 311, 326, 333, 431, 459
HgaI GACGC 1 cut(s) 351
HhaI GCGC 4 cut(s) 56, 70, 452, 454
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 3 cut(s) 84, 157, 690
Hin6I GCGC 4 cut(s) 54, 68, 450, 452
HinP1I GCGC 4 cut(s) 54, 68, 450, 452
HinfI GANTC 7 cut(s) 297, 329, 534, 614, 729, 754, 764
HpaII CCGG 7 cut(s) 277, 294, 311, 326, 333, 431, 459
HphI GGTGA 2 cut(s) 266, 680
Hpy166II GTNNAC 3 cut(s) 97, 247, 599
Hpy188I TCNGA 4 cut(s) 541, 552, 753, 763
Hpy188III TCNNGA 5 cut(s) 115, 405, 545, 726, 785
Hpy8I GTNNAC 3 cut(s) 97, 247, 599
Hpy99I CGWCG 3 cut(s) 62, 89, 855
HpyAV CCTTC 2 cut(s) 85, 717
HpyCH4III ACNGT 2 cut(s) 12, 373
HpyCH4IV ACGT 4 cut(s) 18, 42, 776, 850
HpyCH4V TGCA 7 cut(s) 15, 382, 441, 491, 594, 663, 808
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 35, 62, 81, 171, 322, 447
HpyF3I CTNAG 2 cut(s) 202, 321
HpySE526I ACGT 4 cut(s) 18, 42, 776, 850
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 3 cut(s) 84, 157, 690
HspAI GCGC 4 cut(s) 54, 68, 450, 452
KpnI GGTACC 1 cut(s) 707
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 5 cut(s) 208, 541, 547, 575, 629
LmnI GCTCC 2 cut(s) 149, 313
Lsp1109I GCAGC 2 cut(s) 38, 503
LweI GCATC 1 cut(s) 731
MaeI CTAG 2 cut(s) 405, 865
MaeII ACGT 4 cut(s) 18, 42, 776, 850
MalI GATC 5 cut(s) 210, 543, 549, 577, 631
MboI GATC 5 cut(s) 208, 541, 547, 575, 629
MboII GAAGA 7 cut(s) 16, 218, 357, 570, 662, 759, 809
MflI RGATCY 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 644, 860
MlyI GAGTC 2 cut(s) 608, 723
MseI TTAA 3 cut(s) 342, 477, 626
MspA1I CMGCKG 2 cut(s) 320, 494
MspI CCGG 7 cut(s) 277, 294, 311, 326, 333, 431, 459
MspR9I CCNGG 2 cut(s) 176, 459
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 2 cut(s) 116, 452
MwoI GCNNNNNNNGC 7 cut(s) 21, 35, 62, 81, 171, 322, 447
NciI CCSGG 1 cut(s) 459
NdeI CATATG 1 cut(s) 791
NdeII GATC 5 cut(s) 208, 541, 547, 575, 629
NlaIII CATG 3 cut(s) 84, 157, 690
NlaIV GGNNCC 5 cut(s) 135, 315, 675, 696, 705
NruI TCGCGA 1 cut(s) 116
NspI RCATGY 2 cut(s) 84, 157
PaeI GCATGC 1 cut(s) 84
PalAI GGCGCGCC 1 cut(s) 450
PauI GCGCGC 1 cut(s) 450
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 5 cut(s) 297, 329, 534, 754, 764
PkrI GCNGC 5 cut(s) 31, 53, 67, 456, 493
PleI GAGTC 2 cut(s) 608, 723
PpsI GAGTC 2 cut(s) 608, 723
Psp1406I AACGTT 2 cut(s) 18, 776
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 2 cut(s) 75, 494
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 5 cut(s) 135, 315, 675, 696, 705
PspPI GGNCC 2 cut(s) 308, 738
PstI CTGCAG 2 cut(s) 493, 596
PstNI CAGNNNCTG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 575
PteI GCGCGC 1 cut(s) 450
PvuII CAGCTG 2 cut(s) 320, 494
RruI TCGCGA 1 cut(s) 116
RsaI GTAC 3 cut(s) 191, 705, 838
RsaNI GTAC 3 cut(s) 190, 704, 837
SaqAI TTAA 3 cut(s) 342, 477, 626
SatI GCNGC 5 cut(s) 30, 52, 66, 455, 492
Sau3AI GATC 5 cut(s) 208, 541, 547, 575, 629
Sau96I GGNCC 2 cut(s) 308, 738
SchI GAGTC 2 cut(s) 608, 723
ScrFI CCNGG 2 cut(s) 176, 459
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 1 cut(s) 731
SfcI CTRYAG 3 cut(s) 489, 592, 717
SgsI GGCGCGCC 1 cut(s) 450
SphI GCATGC 1 cut(s) 84
Sse9I AATT 2 cut(s) 644, 860
SsiI CCGC 7 cut(s) 29, 32, 65, 336, 446, 455, 713
SspMI CTAG 2 cut(s) 405, 865
StyD4I CCNGG 2 cut(s) 174, 457
TaaI ACNGT 2 cut(s) 12, 373
TaiI ACGT 4 cut(s) 21, 45, 779, 853
TaqI TCGA 1 cut(s) 211
TasI AATT 2 cut(s) 644, 860
TauI GCSGC 3 cut(s) 32, 68, 457
TfiI GAWTC 5 cut(s) 297, 329, 534, 754, 764
Tru1I TTAA 3 cut(s) 342, 477, 626
Tru9I TTAA 3 cut(s) 342, 477, 626
TscAI CASTG 1 cut(s) 17
TseI GCWGC 2 cut(s) 51, 491
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 404
XceI RCATGY 2 cut(s) 84, 157
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 684
XspI CTAG 2 cut(s) 405, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.