Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

28584542 .. 28588345

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2883 bp

ATGCCATGTGCAAAAGCAAAGGATCAAATTTTATTTGGTTATGTGACTCCTACATACTCCATGCCAAACCAACTCCGTTTGACCAAAAAAAGTAAAAATCCCCAAAACCCCAAACGCTTGTTCACAACAGAAGCTCATTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCCTCGCCACTCGCCCCCAACTTTCTCCTCGTCTTTATCGTTACGCTGCTGCTTTTTTCAGGCGACCCAAAAACCGCAGCGCTCGCCCGGGTTAATTGATTTAGAAGGGACCGGTGAAAATACTGAGGAGTTAGTTCTTGTTGTTCGTAGTAAGAAAAAAATGGTCAACAGTGGTACCCGGAAAGGCCGAGGGGCATCCTTTGGAAAAGGAAGTAAGAACAAGAGAAAATTAGCTGACCCTTCTCCAGAGAATGCAACTAAACCCGGTTCACCCCTAACTGTAACCCCTCGGAGTGAATTACCTTTGGAGGAATGCCAAAAATTGAGTGACAATGAGTCAGCGGAGGCTGGGGTGGTTCAGCCCAAAGAAGAAGTGGAAGTGGGAGATTTTGAGTGTGCAGATTGGGATGACCCAATTGTGTGCCAGCTTGAAGAACTATTGCTGTCTTATTTGCAAGCAATTTTCCGGAGTGCAATTAAGCAGGTAGCTGAACATGGGTACAGTGAGGAGGTTGCTGAAAAGGCTGTTTCAAGAGGCGGCCTTTACATTGGTGGTAAAGACCCTCTAGAAAATATTGTTAGTGATACTCTGGAGGTTCTTAAGAAAGAGAAAGATATTGATGCCTCAAATGATCAGTTTTTTAATTTGCAGCACCTGGTGGAATACACAATGCTAGAAATGATCAGTGTGGTTAGGGAGGTCAGGCCATCGTTATCAGTTGCAGAAGCAATGTGGTGGCTGCTGATATGTGACTTGAACATTTTGCTAGCCTGTACATCGGAAGGTGATCCATTTAGTGCTCTTGGTTTTGAAGAATCCTCTGATTCTTCTTCTCCCCAATTAAGCTCAAAGGCAGACGAAGCAAATTCCTCAAAGCCACCACCTGCCCATGCTCAAAAGAATCCTCCTGAAGCACTCAAATTTGGAAGTTTCCGTAAACATTCTCATGCACCCGAAGAGGTAACTTCTGAGAAAGATAGTTTGTCATCTATGCTAGATAGTCTGGAAAAATGCTTAGGATTCACTGGTGAAAATGTCCGATCAATATCTCAGACATCTACCTCTGAAGAAAAGTCAGGAGCTCTAAAGGGGCGCACCAAGAAAGAATTAGCAGCACTTCGGAAGAAGTCCGTCCATATGGATCGAAATTACAGCGCTTATGAGAAAAGAGGAGGCTTCAAATCAGGGAAAGTCACGATTGGTGGTTTTGTTCTAGAGAAGAGGCTAAAGCCTCCTCCTGAAATTCCCGATGAACAAACAACAGTTGCATCCTCAAAGTCAAGTGCCAAAGCTGGAGCCACCATCCCTTCTTCTGATGGAAGACATCATGCTTCAACCAAGATTTCATCTGCTTCGCTAGCAACAGGTGGCACAGTAACATTACCTATATCTTACTTGCGACCCACAGATCCCAAGCTTTCGCAGAAGTCTTGTATGGAAAAGAAATCTGGACCTAAGGCTAAGACCCCGGCATCCCCCAAGAATCATGATTGCTGTGCTGGCTTGCCATGTGATGACAAGTCTCTAGGAAAGGATATCCCAAGAGATGAGATTGATGAGCTGTTTTTGAAGTCAGTTCCTCAGCTGAAGGATCTTGTTCCACTTGATTACTGTGCTGGCATCCCATATGATAAGTCCCTAGGAAAGTATGTCGCGCAAGATGAAAGGGATGAGCTGATTTTGAATCTAGTTCCTCGGCTGGAGGAGCTGCACAATGAACTAGAAAGCTGGACTAATTGGGCCAATGAGAAGGTCATGCAGGTTTCGCATAGGCTTGGTAAGGAACGACCTGAACTTAAAATACTGAGGCAAGAGAAGGCAGAAGCAGAGAAATTTAAAAAGGAGAAACAAATGTTGGAGGAGAACACGGTGAAGAGAATCTCTGAGTTAAGGAATGCATTAAGTAATGCAACTGACCAGGTTGAGAAAGCTACCTCTAAAATCTGTAGGCTTGAGTTGGAGAATTCCACTCTGAAAGAGGAATTGAGTGCTGCCAAAAGAATGGCTGTAGAGTCCGTTGCACGTAACCAGGAAGCATTAGAGAGGGAGCAGAAGGAACTGAAAAGGGCCCAGGTATGGGAGGGGCTGAGGAGCGCATTGCAGGAAGAGCTTGAGACAGGAAAGAAGAAGGTGGCTCAACTGCAACAGGATTTAGGCAAGGCAAAAAATGTCCATCATCAAATCGAGGCTAGATGGAAAAGGGAGAAGATGGAAAAGGAGAAAATACTTGCGCAGGCTGACTCCATAAGAAAAGAAAGAGAACAATGTGAAGCTTTGACAAAATTGGAGGAGGACGGGATCAAACTGAGCGCAGAATATGATATGCGGGAGTATATGGAAGACATTAGAAAAGTTGAGAGCAAGTTATCAGAACTTAAGTTGAAGTCCGACTCCTCAAGAATTGCAGCACTAAGAAGGGGCGCTGCCGGAAGCTTTGGAGGTTCCCGGTCAGACAGAAAAGGTGGGCTGGCAACAAAGGGAAACCAAAACGCTACAAGCTCCAAGAAGGTAAGGAATTCCCCGGATTTGAGACAGGACCGCGAGTGTGTGATGTGCCTATCTGAGGAGATGTCGGTGGTGTTCCTTCCGTGTGCACATCAGGTTGTTTGTGCAGATTGCAATGAGCTTCACAAGAAACAAGGAATGAAGGATTGCCCTTCTTGTAGGACCCCGATTCAGCGGAGGATCAATGTGCGGTATGCTCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

961

Amino Acids

106.74

Weight (kDa)

8.45

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	208 - 316	1.2e-18	PIR2-like, helical domain
zf-C3HC4_3	PF13920	903 - 951	1.7e-12	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1063
Acc16I	TGCGCA	1 cut(s)	2403
Acc36I	ACCTGC	3 cut(s)	643, 1063, 1921
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	344
AccII	CGCG	2 cut(s)	1826, 2712
AccIII	TCCGGA	1 cut(s)	636
AciI	CCGC	7 cut(s)	245, 512, 708, 2497, 2710, 2851, 2866
AclWI	GGATC	7 cut(s)	30, 953, 1320, 1574, 1770, 2477, 2864
AcsI	RAATTY	7 cut(s)	27, 1036, 1091, 1413, 2003, 2134, 2686
AcuI	CTGAAG	3 cut(s)	1101, 1257, 1778
AdeI	CACNNNGTG	1 cut(s)	829
AfaI	GTAC	3 cut(s)	346, 671, 946
AfeI	AGCGCT	2 cut(s)	251, 1327
AfiI	CCNNNNNNNGG	3 cut(s)	2247, 2248, 2734
AflII	CTTAAG	2 cut(s)	770, 2546
AgeI	ACCGGT	1 cut(s)	281
AgsI	TTSAA	9 cut(s)	602, 702, 928, 983, 1351, 1506, 1741, 1855, 2554
AhdI	GACNNNNNGTC	1 cut(s)	505
AjnI	CCWGG	4 cut(s)	825, 2088, 2199, 2241
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 2009, 2041
Alw21I	GWGCWC	3 cut(s)	973, 1255, 2767
Alw26I	GTCTC	3 cut(s)	1698, 2279, 2695
Alw44I	GTGCAC	1 cut(s)	2763
AlwI	GGATC	7 cut(s)	30, 953, 1320, 1574, 1770, 2477, 2864
AlwNI	CAGNNNCTG	1 cut(s)	826
Ama87I	CYCGRG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	636
Aor51HI	AGCGCT	2 cut(s)	251, 1327
AoxI	GGCC	5 cut(s)	355, 709, 875, 1911, 2238
ApaI	GGGCCC	1 cut(s)	2242
ApaLI	GTGCAC	1 cut(s)	2763
ApoI	RAATTY	7 cut(s)	27, 1036, 1091, 1413, 2003, 2134, 2686
AsiGI	ACCGGT	1 cut(s)	281
Asp718I	GGTACC	1 cut(s)	344
AspA2I	CCTAGG	1 cut(s)	1810
AspLEI	GCGC	8 cut(s)	252, 1266, 1328, 1828, 2267, 2404, 2483, 2594
AspS9I	GGNCC	7 cut(s)	279, 1622, 1911, 2238, 2239, 2707, 2838
AsuC2I	CCSGG	7 cut(s)	258, 259, 349, 435, 1640, 2617, 2693
AsuHPI	GGTGA	5 cut(s)	296, 432, 968, 1211, 2053
AsuNHI	GCTAGC	2 cut(s)	937, 1528
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	4 cut(s)	279, 1622, 2707, 2838
AvrII	CCTAGG	1 cut(s)	1810
AxyI	CCTNAGG	1 cut(s)	1626
BaeGI	GKGCMC	2 cut(s)	2242, 2767
BaeI	ACNNNNGTAYC	2 cut(s)	328, 361
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	2 cut(s)	1255, 2242
BbsI	GAAGAC	2 cut(s)	1498, 2517
Bbv12I	GWGCWC	3 cut(s)	973, 1255, 2767
BbvCI	CCTCAGC	2 cut(s)	1752, 2258
BccI	CCATC	6 cut(s)	886, 1481, 1481, 2352, 2358, 2374
BciT130I	CCWGG	4 cut(s)	827, 2090, 2201, 2243
BclI	TGATCA	2 cut(s)	802, 852
BcnI	CCSGG	7 cut(s)	258, 259, 349, 435, 1640, 2617, 2693
BcoDI	GTCTC	3 cut(s)	1698, 2279, 2695
BfmI	CTRYAG	2 cut(s)	2116, 2178
BfoI	RGCGCY	3 cut(s)	253, 1329, 2595
BfrI	CTTAAG	2 cut(s)	770, 2546
BfuAI	ACCTGC	3 cut(s)	643, 1063, 1921
BlnI	CCTAGG	1 cut(s)	1810
Bme18I	GGWCC	4 cut(s)	279, 1622, 2707, 2838
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	7 cut(s)	279, 1622, 1911, 2238, 2239, 2707, 2838
BmiI	GGNNCC	6 cut(s)	280, 346, 1468, 2240, 2614, 2840
BmsI	GCATC	5 cut(s)	374, 781, 1448, 1652, 1800
BmtI	GCTAGC	2 cut(s)	941, 1532
BpiI	GAAGAC	2 cut(s)	1498, 2517
BpmI	CTGGAG	4 cut(s)	399, 782, 1485, 1892
Bpu10I	CCTNAGC	3 cut(s)	1186, 1752, 2258
BpuEI	CTTGAG	3 cut(s)	2144, 2303, 2551
BpuMI	CCSGG	7 cut(s)	258, 259, 349, 435, 1640, 2617, 2693
BsaAI	YACGTR	1 cut(s)	2195
BsaBI	GATNNNNATC	1 cut(s)	1216
BsaJI	CCNNGG	8 cut(s)	257, 358, 458, 1638, 1810, 1865, 2241, 2691
BsaWI	WCCGGW	2 cut(s)	281, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	2247, 2248, 2734
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	1201
Bse21I	CCTNAGG	1 cut(s)	1626
Bse3DI	GCAATG	3 cut(s)	906, 2267, 2797
Bse8I	GATNNNNATC	1 cut(s)	1216
BseAI	TCCGGA	1 cut(s)	636
BseBI	CCWGG	4 cut(s)	827, 2090, 2201, 2243
BseDI	CCNNGG	8 cut(s)	257, 358, 458, 1638, 1810, 1865, 2241, 2691
BseGI	GGATG	8 cut(s)	365, 583, 1439, 1473, 1643, 1791, 1846, 2875
BseJI	GATNNNNATC	1 cut(s)	1216
BseLI	CCNNNNNNNGG	3 cut(s)	2247, 2248, 2734
BseMI	GCAATG	3 cut(s)	906, 2267, 2797
BseMII	CTCAG	9 cut(s)	285, 1131, 1235, 1766, 1967, 2046, 2249, 2468, 2724
BseNI	ACTGG	1 cut(s)	1201
BseSI	GKGCMC	2 cut(s)	2242, 2767
BseYI	CCCAGC	1 cut(s)	518
BsgI	GTGCAG	3 cut(s)	588, 1865, 2802
Bsh1236I	CGCG	2 cut(s)	1826, 2712
BshFI	GGCC	5 cut(s)	357, 711, 877, 1913, 2240
BshNI	GGYRCC	1 cut(s)	344
BshTI	ACCGGT	1 cut(s)	281
BsiHKAI	GWGCWC	3 cut(s)	973, 1255, 2767
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	9 cut(s)	258, 282, 349, 435, 637, 1640, 2598, 2617, 2693
BslFI	GGGAC	2 cut(s)	292, 1792
BslI	CCNNNNNNNGG	3 cut(s)	2247, 2248, 2734
BsmAI	GTCTC	3 cut(s)	1698, 2279, 2695
BsmFI	GGGAC	2 cut(s)	292, 1792
BsmI	GAATGC	3 cut(s)	427, 488, 2071
BsnI	GGCC	5 cut(s)	357, 711, 877, 1913, 2240
BsoBI	CYCGRG	1 cut(s)	257
Bsp120I	GGGCCC	1 cut(s)	2238
Bsp1286I	GDGCHC	4 cut(s)	973, 1255, 2242, 2767
Bsp13I	TCCGGA	1 cut(s)	636
Bsp1407I	TGTACA	1 cut(s)	944
BspACI	CCGC	7 cut(s)	245, 512, 708, 2497, 2710, 2851, 2866
BspANI	GGCC	5 cut(s)	357, 711, 877, 1913, 2240
BspCNI	CTCAG	9 cut(s)	286, 1132, 1234, 1765, 1968, 2047, 2250, 2469, 2725
BspEI	TCCGGA	1 cut(s)	636
BspFNI	CGCG	2 cut(s)	1826, 2712
BspHI	TCATGA	1 cut(s)	1657
BspLI	GGNNCC	6 cut(s)	280, 346, 1468, 2240, 2614, 2840
BspMI	ACCTGC	3 cut(s)	643, 1063, 1921
BspOI	GCTAGC	2 cut(s)	941, 1532
BspPI	GGATC	7 cut(s)	30, 953, 1320, 1574, 1770, 2477, 2864
BspQI	GCTCTTC	1 cut(s)	2271
BspT107I	GGYRCC	1 cut(s)	344
BspTI	CTTAAG	2 cut(s)	770, 2546
BsrDI	GCAATG	3 cut(s)	906, 2267, 2797
BsrFI	RCCGGY	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	944
BsrI	ACTGG	1 cut(s)	1201
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	8 cut(s)	257, 358, 458, 1638, 1810, 1865, 2241, 2691
BssT1I	CCWWGG	1 cut(s)	1810
Bst2UI	CCWGG	4 cut(s)	827, 2090, 2201, 2243
Bst4CI	ACNGT	7 cut(s)	341, 451, 674, 1435, 1546, 1784, 2041
Bst6I	CTCTTC	4 cut(s)	1122, 1385, 2039, 2271
BstAFI	CTTAAG	2 cut(s)	770, 2546
BstAUI	TGTACA	1 cut(s)	944
BstBAI	YACGTR	1 cut(s)	2195
BstENI	CCTNNNNNAGG	1 cut(s)	2732
BstF5I	GGATG	8 cut(s)	365, 583, 1439, 1473, 1643, 1791, 1846, 2875
BstFNI	CGCG	2 cut(s)	1826, 2712
BstH2I	RGCGCY	3 cut(s)	253, 1329, 2595
BstHHI	GCGC	8 cut(s)	252, 1266, 1328, 1828, 2267, 2404, 2483, 2594
BstMAI	GTCTC	3 cut(s)	1698, 2279, 2695
BstMWI	GCNNNNNNNGC	8 cut(s)	253, 692, 1031, 1529, 1671, 1876, 1936, 2278
BstNI	CCWGG	4 cut(s)	827, 2090, 2201, 2243
BstSFI	CTRYAG	2 cut(s)	2116, 2178
BstSLI	GKGCMC	2 cut(s)	2242, 2767
BstUI	CGCG	2 cut(s)	1826, 2712
BstV2I	GAAGAC	2 cut(s)	1498, 2517
BstX2I	RGATCY	2 cut(s)	1579, 1762
BstXI	CCANNNNNNTGG	1 cut(s)	2173
BstYI	RGATCY	2 cut(s)	1579, 1762
Bsu36I	CCTNAGG	1 cut(s)	1626
BsuRI	GGCC	5 cut(s)	357, 711, 877, 1913, 2240
BtsCI	GGATG	8 cut(s)	365, 583, 1439, 1473, 1643, 1791, 1846, 2875
BtsIMutI	CAGTG	4 cut(s)	346, 679, 862, 1194
BveI	ACCTGC	3 cut(s)	643, 1063, 1921
CaiI	CAGNNNCTG	1 cut(s)	826
CciI	TCATGA	1 cut(s)	1657
CfoI	GCGC	8 cut(s)	252, 1266, 1328, 1828, 2267, 2404, 2483, 2594
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	7 cut(s)	279, 1622, 1911, 2238, 2239, 2707, 2838
Cfr9I	CCCGGG	1 cut(s)	257
CsiI	ACCWGGT	2 cut(s)	825, 2088
Csp6I	GTAC	3 cut(s)	345, 670, 945
CspAI	ACCGGT	1 cut(s)	281
CviAII	CATG	9 cut(s)	6, 61, 665, 1061, 1118, 1499, 1658, 1680, 1927
CviQI	GTAC	3 cut(s)	345, 670, 945
DraI	TTTAAA	1 cut(s)	2008
DraIII	CACNNNGTG	1 cut(s)	829
DriI	GACNNNNNGTC	1 cut(s)	505
Eam1104I	CTCTTC	4 cut(s)	1122, 1385, 2039, 2271
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EarI	CTCTTC	4 cut(s)	1122, 1385, 2039, 2271
Ecl136II	GAGCTC	1 cut(s)	1253
Eco130I	CCWWGG	1 cut(s)	1810
Eco24I	GRGCYC	2 cut(s)	1255, 2242
Eco32I	GATATC	1 cut(s)	1708
Eco47I	GGWCC	4 cut(s)	279, 1622, 2707, 2838
Eco47III	AGCGCT	2 cut(s)	251, 1327
Eco53kI	GAGCTC	1 cut(s)	1253
Eco57I	CTGAAG	3 cut(s)	1101, 1257, 1778
Eco81I	CCTNAGG	1 cut(s)	1626
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	1253
EcoNI	CCTNNNNNAGG	1 cut(s)	2732
EcoO109I	RGGNCCY	2 cut(s)	2238, 2838
EcoRI	GAATTC	2 cut(s)	2134, 2686
EcoRII	CCWGG	4 cut(s)	825, 2088, 2199, 2241
EcoRV	GATATC	1 cut(s)	1708
EcoT14I	CCWWGG	1 cut(s)	1810
EcoT22I	ATGCAT	1 cut(s)	2071
EcoT38I	GRGCYC	2 cut(s)	1255, 2242
ErhI	CCWWGG	1 cut(s)	1810
FaeI	CATG	9 cut(s)	9, 64, 668, 1064, 1121, 1502, 1661, 1683, 1930
FaqI	GGGAC	2 cut(s)	292, 1792
FatI	CATG	9 cut(s)	5, 60, 664, 1060, 1117, 1498, 1657, 1679, 1926
FauI	CCCGC	1 cut(s)	2490
FauNDI	CATATG	2 cut(s)	1308, 1798
FbaI	TGATCA	2 cut(s)	802, 852
FokI	GGATG	8 cut(s)	352, 590, 1426, 1460, 1630, 1778, 1853, 2862
FriOI	GRGCYC	2 cut(s)	1255, 2242
FspI	TGCGCA	1 cut(s)	2403
GlaI	GCGC	8 cut(s)	251, 1265, 1327, 1827, 2266, 2403, 2482, 2593
GsaI	CCCAGC	1 cut(s)	522
GsuI	CTGGAG	4 cut(s)	399, 782, 1485, 1892
HaeII	RGCGCY	3 cut(s)	253, 1329, 2595
HaeIII	GGCC	5 cut(s)	357, 711, 877, 1913, 2240
HapII	CCGG	9 cut(s)	258, 282, 349, 435, 637, 1640, 2598, 2617, 2693
HhaI	GCGC	8 cut(s)	252, 1266, 1328, 1828, 2267, 2404, 2483, 2594
Hin1II	CATG	9 cut(s)	9, 64, 668, 1064, 1121, 1502, 1661, 1683, 1930
Hin6I	GCGC	8 cut(s)	250, 1264, 1326, 1826, 2265, 2402, 2481, 2592
HinP1I	GCGC	8 cut(s)	250, 1264, 1326, 1826, 2265, 2402, 2481, 2592
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	3 cut(s)	1586, 2442, 2602
HpaII	CCGG	9 cut(s)	258, 282, 349, 435, 637, 1640, 2598, 2617, 2693
HphI	GGTGA	5 cut(s)	296, 432, 968, 1211, 2053
Hpy166II	GTNNAC	5 cut(s)	123, 337, 440, 1109, 2765
Hpy8I	GTNNAC	5 cut(s)	123, 337, 440, 1109, 2765
HpyCH4III	ACNGT	7 cut(s)	341, 451, 674, 1435, 1546, 1784, 2041
HpyCH4IV	ACGT	1 cut(s)	2194
HpyF10VI	GCNNNNNNNGC	8 cut(s)	253, 692, 1031, 1529, 1671, 1876, 1936, 2278
HpySE526I	ACGT	1 cut(s)	2194
Hsp92II	CATG	9 cut(s)	9, 64, 668, 1064, 1121, 1502, 1661, 1683, 1930
HspAI	GCGC	8 cut(s)	250, 1264, 1326, 1826, 2265, 2402, 2481, 2592
Kpn2I	TCCGGA	1 cut(s)	636
KpnI	GGTACC	1 cut(s)	348
Ksp22I	TGATCA	2 cut(s)	802, 852
LguI	GCTCTTC	1 cut(s)	2271
LmnI	GCTCC	6 cut(s)	1250, 1466, 1876, 2218, 2262, 2675
LweI	GCATC	5 cut(s)	374, 781, 1448, 1652, 1800
MabI	ACCWGGT	2 cut(s)	825, 2088
MaeII	ACGT	1 cut(s)	2194
MaeIII	GTNAC	9 cut(s)	43, 210, 451, 497, 920, 1132, 1363, 1546, 2195
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	1579, 1762
MhlI	GDGCHC	4 cut(s)	973, 1255, 2242, 2767
MlyI	GAGTC	5 cut(s)	40, 515, 2192, 2405, 2555
MmeI	TCCRAC	3 cut(s)	2007, 2109, 2583
Mph1103I	ATGCAT	1 cut(s)	2071
MroI	TCCGGA	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	1116
MspA1I	CMGCKG	3 cut(s)	512, 1756, 2851
MspCI	CTTAAG	2 cut(s)	770, 2546
MspI	CCGG	9 cut(s)	258, 282, 349, 435, 637, 1640, 2598, 2617, 2693
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	3 cut(s)	427, 488, 2071
MvaI	CCWGG	4 cut(s)	827, 2090, 2201, 2243
MvnI	CGCG	2 cut(s)	1826, 2712
MwoI	GCNNNNNNNGC	8 cut(s)	253, 692, 1031, 1529, 1671, 1876, 1936, 2278
NciI	CCSGG	7 cut(s)	258, 259, 349, 435, 1640, 2617, 2693
NdeI	CATATG	2 cut(s)	1308, 1798
NheI	GCTAGC	2 cut(s)	937, 1528
NlaIII	CATG	9 cut(s)	9, 64, 668, 1064, 1121, 1502, 1661, 1683, 1930
NlaIV	GGNNCC	6 cut(s)	280, 346, 1468, 2240, 2614, 2840
NmeAIII	GCCGAG	2 cut(s)	383, 1846
NmuCI	GTSAC	4 cut(s)	43, 497, 920, 1363
NsbI	TGCGCA	1 cut(s)	2403
NsiI	ATGCAT	1 cut(s)	2071
PagI	TCATGA	1 cut(s)	1657
PaqCI	CACCTGC	1 cut(s)	1063
PciSI	GCTCTTC	1 cut(s)	2271
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	3 cut(s)	427, 488, 2071
PfeI	GAWTC	8 cut(s)	986, 995, 1072, 1191, 1654, 1855, 2049, 2845
PinAI	ACCGGT	1 cut(s)	281
PleI	GAGTC	5 cut(s)	40, 514, 2191, 2405, 2555
PpsI	GAGTC	5 cut(s)	40, 514, 2191, 2405, 2555
Ppu21I	YACGTR	1 cut(s)	2195
PpuMI	RGGWCCY	1 cut(s)	2838
Psp124BI	GAGCTC	1 cut(s)	1255
Psp5II	RGGWCCY	1 cut(s)	2838
Psp6I	CCWGG	4 cut(s)	825, 2088, 2199, 2241
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	4 cut(s)	825, 2088, 2199, 2241
PspN4I	GGNNCC	6 cut(s)	280, 346, 1468, 2240, 2614, 2840
PspOMI	GGGCCC	1 cut(s)	2238
PspPI	GGNCC	7 cut(s)	279, 1622, 1911, 2238, 2239, 2707, 2838
PspPPI	RGGWCCY	1 cut(s)	2838
PsrI	GAACNNNNNNTAC	2 cut(s)	1956, 1988
PstNI	CAGNNNCTG	1 cut(s)	826
PsuI	RGATCY	2 cut(s)	1579, 1762
PvuII	CAGCTG	1 cut(s)	1756
RsaI	GTAC	3 cut(s)	346, 671, 946
RsaNI	GTAC	3 cut(s)	345, 670, 945
RseI	CAYNNNNRTG	1 cut(s)	1116
SacI	GAGCTC	1 cut(s)	1255
SapI	GCTCTTC	1 cut(s)	2271
Sau96I	GGNCC	7 cut(s)	279, 1622, 1911, 2238, 2239, 2707, 2838
SchI	GAGTC	5 cut(s)	40, 515, 2192, 2405, 2555
SduI	GDGCHC	4 cut(s)	973, 1255, 2242, 2767
SexAI	ACCWGGT	2 cut(s)	825, 2088
SfaNI	GCATC	5 cut(s)	374, 781, 1448, 1652, 1800
SfcI	CTRYAG	2 cut(s)	2116, 2178
SinI	GGWCC	4 cut(s)	279, 1622, 2707, 2838
SmaI	CCCGGG	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SmlI	CTYRAG	5 cut(s)	770, 2123, 2282, 2546, 2566
SmoI	CTYRAG	5 cut(s)	770, 2123, 2282, 2546, 2566
SsiI	CCGC	7 cut(s)	245, 512, 708, 2497, 2710, 2851, 2866
SspI	AATATT	1 cut(s)	745
SstI	GAGCTC	1 cut(s)	1255
StyI	CCWWGG	1 cut(s)	1810
TaaI	ACNGT	7 cut(s)	341, 451, 674, 1435, 1546, 1784, 2041
TaiI	ACGT	1 cut(s)	2197
TaqI	TCGA	2 cut(s)	1315, 2355
TatI	WGTACW	1 cut(s)	944
TauI	GCSGC	1 cut(s)	711
TfiI	GAWTC	8 cut(s)	986, 995, 1072, 1191, 1654, 1855, 2049, 2845
TscAI	CASTG	4 cut(s)	346, 679, 862, 1201
TseFI	GTSAC	4 cut(s)	43, 497, 920, 1363
Tsp45I	GTSAC	4 cut(s)	43, 497, 920, 1363
TspDTI	ATGAA	5 cut(s)	1437, 1506, 1848, 1902, 2831
TspGWI	ACGGA	5 cut(s)	65, 1094, 1291, 2176, 2748
TspMI	CCCGGG	1 cut(s)	257
TspRI	CASTG	4 cut(s)	346, 679, 862, 1201
Vha464I	CTTAAG	2 cut(s)	770, 2546
VneI	GTGCAC	1 cut(s)	2763
VpaK11BI	GGWCC	4 cut(s)	279, 1622, 2707, 2838
XagI	CCTNNNNNAGG	1 cut(s)	2732
XapI	RAATTY	7 cut(s)	27, 1036, 1091, 1413, 2003, 2134, 2686
XbaI	TCTAGA	2 cut(s)	736, 1384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XmaI	CCCGGG	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	1810
Zsp2I	ATGCAT	1 cut(s)	2071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.