Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003305

Physical Location & Seq

Genomic Coordinates Forward (+)

29735295 .. 29735945

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTGAATATCGATCAGTTCTTCCTTGGGGATTATCGCCCCCTTGCACGGGATGAGTTTGGTTACCTTATTGATCAGGAGACACAACTTTCCACTTACCGAAGGAATCTTCAAGATCCTCTATGTGATTCAAGTATGATACCATACCCGGAACCTTATCAGAGTACATACCAGCAACGACGACTTGGTGCTCTGGGCATGGAATGGCGTCCATCATCCATGAAATTTTCTGTTGGTGTGGATATCAATACAGGCCAGGATTATATGATGCCACCTTTGCCAGATCGATCTGGAAAGAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

102

Amino Acids

11.75

Weight (kDa)

4.65

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47410 AT2G47410 AT2G47410 AT2G47410 AT2G47410 AT2G47410
fragaria_vesca	FvH4_5g39310
malus_domestica	MD03G1295600.v1.1 MD11G1314700.v1.1 MD11G1314800.v1.1
prunus_persica	Prupe.8G271800_v2.0.a1 Prupe.8G271800_v2.0.a1 Prupe.8G271800_v2.0.a1 Prupe.8G271800_v2.0.a1 Prupe.8G271800_v2.0.a1 Prupe.8G271800_v2.0.a1 Prupe.8G271800_v2.0.a1
pyrus_communis	pycom03g23360 pycom03g23380 pycom11g27460 pycom11g27470 pycom11g27480 pycom11g27490 pycom11g27500
rosa_chinensis	RchiOBHm_Chr7g0241591
rosa_laevigata	RLG00000000563
rosa_multiflora	Rmu_co8504919.1_g000001 Rmu_sc0002268.1_g000015
rosa_roxburghii	Rroxscaffold_3G00218900
rosa_rugosa	Rorug07G0345400 Rorug07G0345500
rosa_samantha	Rh7AG499900 Rh7BG471000 Rh7CG516300 Rh7DG484900
rosa_wichuraiana	Rw7G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	208
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	48, 49
AgsI	TTSAA	2 cut(s)	113, 132
AjnI	CCWGG	1 cut(s)	255
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	193
BccI	CCATC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	149, 257
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	149, 257
BmsI	GCATC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	2 cut(s)	12, 286
BsaHI	GRCGYC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 49
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	2 cut(s)	12, 286
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	58, 215
BseLI	CCNNNNNNNGG	2 cut(s)	48, 49
BshFI	GGCC	1 cut(s)	255
BshVI	ATCGAT	2 cut(s)	12, 286
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	48, 49
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	5 cut(s)	13, 73, 115, 283, 287
BspANI	GGCC	1 cut(s)	255
BspDI	ATCGAT	2 cut(s)	12, 286
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	5 cut(s)	13, 73, 115, 283, 287
BssNI	GRCGYC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	208
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	58, 215
BstKTI	GATC	5 cut(s)	16, 76, 118, 286, 290
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	5 cut(s)	13, 73, 115, 283, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	147, 255
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu15I	ATCGAT	2 cut(s)	12, 286
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	2 cut(s)	12, 286
BtsCI	GGATG	2 cut(s)	58, 215
ClaI	ATCGAT	2 cut(s)	12, 286
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	2 cut(s)	199, 220
CviJI	RGCY	1 cut(s)	255
CviKI_1	RGCY	1 cut(s)	255
CviQI	GTAC	1 cut(s)	165
DpnI	GATC	5 cut(s)	15, 75, 117, 285, 289
DpnII	GATC	5 cut(s)	13, 73, 115, 283, 287
Eco130I	CCWWGG	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	244
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	202, 223
FaiI	YATR	8 cut(s)	124, 137, 145, 169, 200, 221, 264, 266
FatI	CATG	2 cut(s)	198, 219
FbaI	TGATCA	1 cut(s)	73
FokI	GGATG	2 cut(s)	65, 202
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	202, 223
HinfI	GANTC	2 cut(s)	106, 128
HpaII	CCGG	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	3 cut(s)	77, 113, 291
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
Hsp92I	GRCGYC	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	202, 223
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	13, 73, 115, 283, 287
LpnPI	CCDG	9 cut(s)	62, 162, 179, 185, 237, 242, 269, 276, 294
LweI	GCATC	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	5 cut(s)	15, 75, 117, 285, 289
MboI	GATC	5 cut(s)	13, 73, 115, 283, 287
MboII	GAAGA	2 cut(s)	13, 101
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	224
MnlI	CCTC	1 cut(s)	129
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	149, 257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	13, 73, 115, 283, 287
NlaIII	CATG	2 cut(s)	202, 223
NlaIV	GGNNCC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	106, 128
Psp6I	CCWGG	1 cut(s)	255
PspEI	GGTNACC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
Sau3AI	GATC	5 cut(s)	13, 73, 115, 283, 287
ScrFI	CCNGG	2 cut(s)	149, 257
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	3 cut(s)	69, 157, 277
SfaNI	GCATC	1 cut(s)	258
Sse9I	AATT	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	147, 255
StyI	CCWWGG	1 cut(s)	25
TaqI	TCGA	2 cut(s)	12, 286
TasI	AATT	1 cut(s)	224
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	106, 128
TspDTI	ATGAA	1 cut(s)	236
XapI	RAATTY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.