Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012397

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Reverse (-)

65470 .. 71704

Gene Structure 6235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACCGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGTGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTTTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAATTCAATGCGTAATCTTAGCATTCAATGGTTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGGTTGGTATTAGGCTGGATACAGCAAAATAATTCTATTAGATCTAATATTTTCAACTTTAGAGCATATATTAACTCATATATCCTTTTCGATCGTTTCAATTGTAATTACAATTCATTTGATAATTTTATTAGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

220

Amino Acids

25.79

Weight (kDa)

9.76

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	6 - 202	2.8e-128	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	7 cut(s)	324, 344, 374, 382, 405, 574, 619
AluBI	AGCT	3 cut(s)	95, 169, 245
AluI	AGCT	3 cut(s)	95, 169, 245
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	1 cut(s)	68
ApaI	GGGCCC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	319
AsiGI	ACCGGT	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	68, 69
AvaI	CYCGRG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	72
BanII	GRGCYC	2 cut(s)	72, 97
Bbv12I	GWGCWC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	531
BfaI	CTAG	2 cut(s)	209, 242
BfuI	GTATCC	1 cut(s)	531
BglII	AGATCT	1 cut(s)	560
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	68, 69
BmiI	GGNNCC	2 cut(s)	70, 124
BmsI	GCATC	2 cut(s)	214, 431
Bsa29I	ATCGAT	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse118I	RCCGGY	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	72
Bsh1285I	CGRYCG	2 cut(s)	21, 613
BshFI	GGCC	1 cut(s)	70
BshTI	ACCGGT	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	185
BsiEI	CGRYCG	2 cut(s)	21, 613
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	96
Bsp120I	GGGCCC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	72, 97
Bsp143I	GATC	4 cut(s)	186, 305, 560, 610
BspANI	GGCC	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	185
BspHI	TCATGA	2 cut(s)	171, 507
BspLI	GGNNCC	2 cut(s)	70, 124
BspPI	GGATC	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	4 cut(s)	186, 305, 560, 610
Bst4CI	ACNGT	2 cut(s)	238, 252
Bst6I	CTCTTC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	335
BstKTI	GATC	4 cut(s)	189, 308, 563, 613
BstMBI	GATC	4 cut(s)	186, 305, 560, 610
BstMCI	CGRYCG	2 cut(s)	21, 613
BstSLI	GKGCMC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	305, 560
BstYI	RGATCY	2 cut(s)	305, 560
Bsu15I	ATCGAT	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	70
BsuTUI	ATCGAT	1 cut(s)	185
CciI	TCATGA	2 cut(s)	171, 507
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	68, 69
ClaI	ATCGAT	1 cut(s)	185
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	2 cut(s)	172, 508
CviJI	RGCY	5 cut(s)	70, 95, 169, 245, 534
CviKI_1	RGCY	5 cut(s)	70, 95, 169, 245, 534
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	4 cut(s)	188, 307, 562, 612
DpnII	GATC	4 cut(s)	186, 305, 560, 610
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	2 cut(s)	72, 97
Eco53kI	GAGCTC	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	68, 69
EcoT38I	GRGCYC	2 cut(s)	72, 97
FaeI	CATG	2 cut(s)	175, 511
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	2 cut(s)	171, 507
FblI	GTMKAC	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	72, 97
FspBI	CTAG	2 cut(s)	209, 242
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	2 cut(s)	175, 511
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	221, 424
Hpy188I	TCNGA	4 cut(s)	32, 51, 92, 416
Hpy188III	TCNNGA	4 cut(s)	172, 274, 355, 508
Hpy8I	GTNNAC	2 cut(s)	221, 424
HpyAV	CCTTC	3 cut(s)	95, 104, 113
HpyCH4III	ACNGT	2 cut(s)	238, 252
HpyCH4V	TGCA	2 cut(s)	205, 444
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	175, 511
Kzo9I	GATC	4 cut(s)	186, 305, 560, 610
LpnPI	CCDG	5 cut(s)	163, 259, 328, 368, 520
LweI	GCATC	2 cut(s)	214, 431
MaeI	CTAG	2 cut(s)	209, 242
MaeIII	GTNAC	2 cut(s)	463, 494
MalI	GATC	4 cut(s)	188, 307, 562, 612
MboI	GATC	4 cut(s)	186, 305, 560, 610
MboII	GAAGA	6 cut(s)	16, 73, 119, 128, 142, 262
MfeI	CAATTG	1 cut(s)	619
MflI	RGATCY	2 cut(s)	305, 560
MhlI	GDGCHC	2 cut(s)	72, 97
MluCI	AATT	9 cut(s)	13, 319, 374, 489, 550, 619, 625, 631, 643
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	82, 210, 234
MseI	TTAA	2 cut(s)	488, 591
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	619
Mva1269I	GAATGC	1 cut(s)	339
NdeII	GATC	4 cut(s)	186, 305, 560, 610
NlaIII	CATG	2 cut(s)	175, 511
NlaIV	GGNNCC	2 cut(s)	70, 124
NmuCI	GTSAC	1 cut(s)	494
PagI	TCATGA	2 cut(s)	171, 507
PctI	GAATGC	1 cut(s)	339
PinAI	ACCGGT	1 cut(s)	149
Ple19I	CGATCG	1 cut(s)	613
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	70, 124
PspOMI	GGGCCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	68, 69
PsuI	RGATCY	2 cut(s)	305, 560
PvuI	CGATCG	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	488, 591
Sau3AI	GATC	4 cut(s)	186, 305, 560, 610
Sau96I	GGNCC	2 cut(s)	68, 69
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	72, 97
SetI	ASST	4 cut(s)	97, 171, 226, 247
SfaNI	GCATC	2 cut(s)	214, 431
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	9 cut(s)	13, 319, 374, 489, 550, 619, 625, 631, 643
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	2 cut(s)	209, 242
SstI	GAGCTC	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	238, 252
TaqI	TCGA	4 cut(s)	185, 439, 609, 655
TaqII	GACCGA	1 cut(s)	7
TasI	AATT	9 cut(s)	13, 319, 374, 489, 550, 619, 625, 631, 643
Tru1I	TTAA	2 cut(s)	488, 591
Tru9I	TTAA	2 cut(s)	488, 591
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	7 cut(s)	17, 169, 254, 379, 496, 524, 624
XapI	RAATTY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	2 cut(s)	209, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.