pycom12g14960

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0007418
Physical Location & Seq
Reverse (-)
17419683 .. 17421047
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGGCGGTTTCCACCAAGTTTTTGGCTCTCTTCCTCTCCTTCCTATCCATCCATGTAGTTCTAGGTGAGTTTATATGCGAGGATTTGCCGAACGATGTTTGTGCATTTTCGGTGTCGTCGGCCGGGAAAAGGTGCTTGTTAGAGACCATGTCCAAGAAAGATGGAAGCATAGAGTATCAGTGCAGGACATCAGAAGTTGTGGTGGAGGGAGTGGCTGATTACATAGAGATAGATCAGTGCGTGCAGGCTTGTGGGATTGATAGGAAGTCTGTTGGGATTTCGTCTGATGCCCTCCTTGAGCCTCAGTTCATGGCTAAGCTCTGCTCTGCTCCTTGTTACCAAAAGTGCCCCAACATTGCTGACCTTTACTTCAACTTGGCAGCTGGAGAGGGTGTATTCTTGCCCGATCTCTGCGACAAGCAGCGTTCCAACCCTCACCGTGCCATGATCGCGCTTCTGAGCTCTGGCGAGGCCGCCCCTAGTCCTCACGGCTCCCAATTACCATCAGGGTTGAGTGCGGCATATCCCCCTTCTGAGGCATTTGAACCTGCATCTGCTCCTAGTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

191

Amino Acids

20.26

Weight (kDa)

4.71

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 25 - 167 7.9e-71 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccII CGCG 1 cut(s) 452
AciI CCGC 3 cut(s) 5, 474, 518
AcoI YGGCCR 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 129, 535
AgsI TTSAA 2 cut(s) 373, 545
AluBI AGCT 3 cut(s) 319, 383, 462
AluI AGCT 3 cut(s) 319, 383, 462
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 1 cut(s) 137
AoxI GGCC 2 cut(s) 120, 471
ApeKI GCWGC 2 cut(s) 380, 421
AspLEI GCGC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 77, 428
BaeGI GKGCMC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 2 cut(s) 392, 433
BccI CCATC 3 cut(s) 56, 155, 511
BceAI ACGGC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 3 cut(s) 62, 480, 561
BfuAI ACCTGC 1 cut(s) 556
BisI GCNGC 4 cut(s) 381, 422, 474, 519
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 4 cut(s) 382, 423, 475, 520
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 2 cut(s) 277, 560
BpmI CTGGAG 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 535
Bse3DI GCAATG 1 cut(s) 354
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 129, 535
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 3 cut(s) 317, 449, 525
BseSI GKGCMC 1 cut(s) 350
BseX3I CGGCCG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 392, 433
BsgI GTGCAG 2 cut(s) 202, 263
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 122, 473
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 464
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 129, 535
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 122, 473
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 350, 464
Bsp143I GATC 3 cut(s) 232, 406, 447
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 3 cut(s) 5, 474, 518
BspANI GGCC 2 cut(s) 122, 473
BspCNI CTCAG 3 cut(s) 316, 450, 526
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 556
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 354
BssMI GATC 3 cut(s) 232, 406, 447
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 242, 246
BstDEI CTNAG 4 cut(s) 303, 315, 458, 534
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 3 cut(s) 235, 409, 450
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 232, 406, 447
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 392, 433
BstXI CCANNNNNNTGG 1 cut(s) 22
BstZI CGGCCG 1 cut(s) 120
BsuRI GGCC 2 cut(s) 122, 473
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 185, 242
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 242, 246
CfoI GCGC 1 cut(s) 454
CviAII CATG 4 cut(s) 53, 148, 310, 445
DdeI CTNAG 4 cut(s) 303, 315, 458, 534
DpnI GATC 3 cut(s) 234, 408, 449
DpnII GATC 3 cut(s) 232, 406, 447
EaeI YGGCCR 1 cut(s) 120
EagI CGGCCG 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 462
EclXI CGGCCG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 464
Eco31I GGTCTC 1 cut(s) 137
Eco52I CGGCCG 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 464
FaeI CATG 4 cut(s) 56, 151, 313, 448
FatI CATG 4 cut(s) 52, 147, 309, 444
Fnu4HI GCNGC 4 cut(s) 381, 422, 474, 519
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 4 cut(s) 381, 422, 474, 519
FspBI CTAG 3 cut(s) 62, 480, 561
GlaI GCGC 1 cut(s) 453
GluI GCNGC 4 cut(s) 381, 422, 474, 519
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 2 cut(s) 122, 473
HapII CCGG 1 cut(s) 123
HhaI GCGC 1 cut(s) 454
Hin1II CATG 4 cut(s) 56, 151, 313, 448
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 77, 428
Hpy188I TCNGA 4 cut(s) 193, 286, 459, 535
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 49, 540
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4V TGCA 4 cut(s) 104, 183, 244, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 4 cut(s) 303, 315, 458, 534
Hsp92II CATG 4 cut(s) 56, 151, 313, 448
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 3 cut(s) 232, 406, 447
LmnI GCTCC 3 cut(s) 334, 497, 562
LpnPI CCDG 7 cut(s) 136, 169, 230, 369, 450, 492, 561
Lsp1109I GCAGC 2 cut(s) 392, 433
LweI GCATC 2 cut(s) 277, 560
MaeI CTAG 3 cut(s) 62, 480, 561
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 234, 408, 449
MboI GATC 3 cut(s) 232, 406, 447
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 2 cut(s) 350, 464
MluCI AATT 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 1 cut(s) 124
NdeII GATC 3 cut(s) 232, 406, 447
NlaIII CATG 4 cut(s) 56, 151, 313, 448
NlaIV GGNNCC 1 cut(s) 493
PflFI GACNNNGTC 1 cut(s) 148
PkrI GCNGC 4 cut(s) 382, 423, 475, 520
Psp124BI GAGCTC 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 493
PsyI GACNNNGTC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 464
SatI GCNGC 4 cut(s) 381, 422, 474, 519
Sau3AI GATC 3 cut(s) 232, 406, 447
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 2 cut(s) 350, 464
SetI ASST 7 cut(s) 67, 134, 321, 366, 385, 464, 550
SfaNI GCATC 2 cut(s) 277, 560
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 497
SsiI CCGC 3 cut(s) 5, 474, 518
SspMI CTAG 3 cut(s) 62, 480, 561
SstI GAGCTC 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 440
TasI AATT 1 cut(s) 497
TauI GCSGC 2 cut(s) 476, 521
TscAI CASTG 2 cut(s) 185, 242
TseI GCWGC 2 cut(s) 380, 421
TspDTI ATGAA 1 cut(s) 298
TspRI CASTG 2 cut(s) 185, 242
Tth111I GACNNNGTC 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XspI CTAG 3 cut(s) 62, 480, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.