pycom12g20960

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0003886
Physical Location & Seq
Forward (+)
22269988 .. 22273041
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ATGACCAAACTACCCTTTCCATTTAACCAAAATTTCAAATCCCTAAAGCCAACTTTCCCAATACTGACATACAAAACCCCCAAATCCTGTCCCACATTATCTCCCTCCAAATTTTTCAACAGCCATGAATGCCATCCTCATTCTCTCATGGCCATTCTTCTTCTCTCCCTCTCTCCCCACCCACCAAATCCTCCCAAAAACCCTAATCCCACCACCCCAAAACCCACAATCTCTCTCCCCACCACTACTACCACCACCACCACTCCTACCTCCTCCAAAAGAAACTTGATCCTCAAGACAACCTCCCTCTTCCTTATTTCTCTGACCCCTCAGCAACACCCAGTTGCCCATTCTTCACCGGAATCTCCTCCGCCGCCTCCAAGGCTGGCTCTTTCCGGCATCGCCAACACGAAAAATTGGTTCCAGTTCTTCGGAGATGGGTTCGCCATTAGGGTCCCTCCTCAGTTTCAGGACGTTCAGGAGCCGGAGGATTACAATTCTGGGTTGTCCCTTTATGGAGACAAGGTAAAGCCCAAGACCTTTGCGGCGCGTTTTGCATCTGCTGATGGATATGAGGTTGTGAGTGTTGTTATTCGCCCATCGAATTCACTCAAGATCACCTTTTTAGAGGCCAAAGACATAACGGATTTAGGTTCCTTGAAGGAGGCTGCAAAAATCTTCATTCCAGTTGGATCTACTGTATACTCTGCCCGAGCTATAAAGATAAAGGAAGAAGAAGGTTTTAGGACTTATTATTTCTACGAGTTTGGTATACAACAACAGCATGCAGCACTTGTAGCTGCTGTTAACGGTGGAAAGACATATATCGCTGGAGCTACTGCCCCGGAGTCTAAGTGGAATGATGATGGCGTGAAGCTTCGCTCTGCTGCTATATCGATGACTGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

304

Amino Acids

33.21

Weight (kDa)

9.48

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 144 - 302 7.3e-09 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 702, 772
AccII CGCG 1 cut(s) 550
AciI CCGC 3 cut(s) 371, 374, 545
AclWI GGATC 2 cut(s) 283, 700
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 3 cut(s) 31, 110, 604
AgsI TTSAA 3 cut(s) 37, 118, 661
AluBI AGCT 4 cut(s) 716, 800, 836, 877
AluI AGCT 4 cut(s) 716, 800, 836, 877
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 2 cut(s) 283, 700
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 2 cut(s) 150, 630
ApeKI GCWGC 4 cut(s) 668, 788, 800, 887
ApoI RAATTY 3 cut(s) 31, 110, 604
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 845
AsuHPI GGTGA 2 cut(s) 348, 610
AvaI CYCGRG 1 cut(s) 711
AvaII GGWCC 1 cut(s) 454
BalI TGGCCA 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 4 cut(s) 655, 787, 800, 874
BccI CCATC 5 cut(s) 141, 431, 560, 607, 860
BcnI CCSGG 1 cut(s) 845
BcoDI GTCTC 1 cut(s) 513
BglI GCCNNNNNGGC 1 cut(s) 382
BisI GCNGC 6 cut(s) 374, 546, 669, 789, 801, 888
BlsI GCNGC 6 cut(s) 375, 547, 670, 790, 802, 889
Bme1390I CCNGG 1 cut(s) 845
Bme18I GGWCC 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 711
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 5 cut(s) 422, 455, 456, 483, 655
BmrFI CCNGG 1 cut(s) 845
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 2 cut(s) 408, 566
BmuI ACTGGG 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 852
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 278, 596
BpuMI CCSGG 1 cut(s) 845
Bsa29I ATCGAT 1 cut(s) 896
BsaJI CCNNGG 2 cut(s) 380, 843
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 8 cut(s) 85, 115, 247, 277, 510, 540, 839, 869
Bse1I ACTGG 3 cut(s) 341, 424, 686
BseCI ATCGAT 1 cut(s) 896
BseDI CCNNGG 2 cut(s) 380, 843
BseGI GGATG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 344, 476
BseNI ACTGG 3 cut(s) 341, 424, 686
BseRI GAGGAG 3 cut(s) 262, 357, 450
BseXI GCAGC 4 cut(s) 655, 787, 800, 874
Bsh1236I CGCG 1 cut(s) 550
BshFI GGCC 2 cut(s) 152, 632
BshVI ATCGAT 1 cut(s) 896
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 4 cut(s) 359, 396, 485, 845
BslFI GGGAC 3 cut(s) 75, 440, 493
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 3 cut(s) 75, 440, 493
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 152, 632
BsoBI CYCGRG 1 cut(s) 711
Bsp143I GATC 3 cut(s) 288, 615, 692
BspACI CCGC 3 cut(s) 371, 374, 545
BspANI GGCC 2 cut(s) 152, 632
BspCNI CTCAG 2 cut(s) 343, 475
BspDI ATCGAT 1 cut(s) 896
BspFNI CGCG 1 cut(s) 550
BspLI GGNNCC 5 cut(s) 422, 455, 456, 483, 655
BspPI GGATC 2 cut(s) 283, 700
BsrI ACTGG 3 cut(s) 341, 424, 686
BssECI CCNNGG 2 cut(s) 380, 843
BssMI GATC 3 cut(s) 288, 615, 692
BssNAI GTATAC 2 cut(s) 703, 773
BssT1I CCWWGG 1 cut(s) 380
Bst1107I GTATAC 2 cut(s) 703, 773
Bst4CI ACNGT 3 cut(s) 700, 812, 904
Bst6I CTCTTC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 387, 786
BstDEI CTNAG 3 cut(s) 330, 462, 852
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 550
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 3 cut(s) 291, 618, 695
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 3 cut(s) 288, 615, 692
BstMWI GCNNNNNNNGC 4 cut(s) 129, 382, 554, 797
BstNSI RCATGY 1 cut(s) 788
BstSCI CCNGG 1 cut(s) 843
BstUI CGCG 1 cut(s) 550
BstV1I GCAGC 4 cut(s) 655, 787, 800, 874
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
BstZ17I GTATAC 2 cut(s) 703, 773
Bsu15I ATCGAT 1 cut(s) 896
BsuRI GGCC 2 cut(s) 152, 632
BsuTUI ATCGAT 1 cut(s) 896
BtgZI GCGATG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 387, 786
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 454
ClaI ATCGAT 1 cut(s) 896
CviAII CATG 3 cut(s) 125, 148, 785
DdeI CTNAG 3 cut(s) 330, 462, 852
DpnI GATC 3 cut(s) 290, 617, 694
DpnII GATC 3 cut(s) 288, 615, 692
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 3 cut(s) 128, 151, 788
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 3 cut(s) 75, 440, 493
FatI CATG 3 cut(s) 124, 147, 784
FblI GTMKAC 2 cut(s) 702, 772
Fnu4HI GCNGC 6 cut(s) 374, 546, 669, 789, 801, 888
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 6 cut(s) 374, 546, 669, 789, 801, 888
GlaI GCGC 1 cut(s) 549
GluI GCNGC 6 cut(s) 374, 546, 669, 789, 801, 888
GsuI CTGGAG 1 cut(s) 852
HaeIII GGCC 2 cut(s) 152, 632
HapII CCGG 4 cut(s) 359, 396, 485, 845
HhaI GCGC 1 cut(s) 550
Hin1II CATG 3 cut(s) 128, 151, 788
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 2 cut(s) 362, 848
HpaI GTTAAC 1 cut(s) 808
HpaII CCGG 4 cut(s) 359, 396, 485, 845
HphI GGTGA 2 cut(s) 348, 610
Hpy166II GTNNAC 3 cut(s) 703, 773, 808
Hpy188I TCNGA 2 cut(s) 324, 434
Hpy188III TCNNGA 4 cut(s) 295, 470, 479, 613
Hpy8I GTNNAC 3 cut(s) 703, 773, 808
HpyAV CCTTC 2 cut(s) 655, 731
HpyCH4III ACNGT 3 cut(s) 700, 812, 904
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 3 cut(s) 557, 671, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 382, 554, 797
HpyF3I CTNAG 3 cut(s) 330, 462, 852
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 3 cut(s) 128, 151, 788
HspAI GCGC 1 cut(s) 548
KflI GGGWCCC 1 cut(s) 454
KspAI GTTAAC 1 cut(s) 808
Kzo9I GATC 3 cut(s) 288, 615, 692
LmnI GCTCC 2 cut(s) 481, 833
Lsp1109I GCAGC 4 cut(s) 655, 787, 800, 874
LweI GCATC 2 cut(s) 408, 566
MaeII ACGT 1 cut(s) 474
MalI GATC 3 cut(s) 290, 617, 694
MboI GATC 3 cut(s) 288, 615, 692
MboII GAAGA 8 cut(s) 149, 152, 301, 345, 421, 670, 743, 746
MflI RGATCY 1 cut(s) 692
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 5 cut(s) 31, 110, 415, 496, 604
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 1 cut(s) 670
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 2 cut(s) 24, 807
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 4 cut(s) 359, 396, 485, 845
MspR9I CCNGG 1 cut(s) 845
Mva1269I GAATGC 1 cut(s) 134
MvnI CGCG 1 cut(s) 550
MwoI GCNNNNNNNGC 4 cut(s) 129, 382, 554, 797
NciI CCSGG 1 cut(s) 845
NdeII GATC 3 cut(s) 288, 615, 692
NlaIII CATG 3 cut(s) 128, 151, 788
NlaIV GGNNCC 5 cut(s) 422, 455, 456, 483, 655
NspI RCATGY 1 cut(s) 788
PaeI GCATGC 1 cut(s) 788
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 6 cut(s) 375, 547, 670, 790, 802, 889
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
PpuMI RGGWCCY 1 cut(s) 454
Psp5II RGGWCCY 1 cut(s) 454
PspN4I GGNNCC 5 cut(s) 422, 455, 456, 483, 655
PspPI GGNCC 1 cut(s) 454
PspPPI RGGWCCY 1 cut(s) 454
PsuI RGATCY 1 cut(s) 692
SaqAI TTAA 2 cut(s) 24, 807
SatI GCNGC 6 cut(s) 374, 546, 669, 789, 801, 888
Sau3AI GATC 3 cut(s) 288, 615, 692
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 1 cut(s) 845
SfaNI GCATC 2 cut(s) 408, 566
SinI GGWCC 1 cut(s) 454
SmlI CTYRAG 2 cut(s) 293, 611
SmoI CTYRAG 2 cut(s) 293, 611
SphI GCATGC 1 cut(s) 788
Sse9I AATT 5 cut(s) 31, 110, 415, 496, 604
SsiI CCGC 3 cut(s) 371, 374, 545
StyD4I CCNGG 1 cut(s) 843
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 3 cut(s) 700, 812, 904
TaiI ACGT 1 cut(s) 477
TaqI TCGA 2 cut(s) 602, 896
TasI AATT 5 cut(s) 31, 110, 415, 496, 604
TauI GCSGC 2 cut(s) 376, 548
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 2 cut(s) 24, 807
Tru9I TTAA 2 cut(s) 24, 807
TseI GCWGC 4 cut(s) 668, 788, 800, 887
TspDTI ATGAA 2 cut(s) 141, 670
TspGWI ACGGA 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 3 cut(s) 31, 110, 604
XceI RCATGY 1 cut(s) 788
XmiI GTMKAC 2 cut(s) 702, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.