Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008919

Physical Location & Seq

Genomic Coordinates Forward (+)

1077632 .. 1080095

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAACGGTGGAAATGGCACTTACAGCTACTCCAAGAACTCCTCCTACCAGAAAGAATCCGCTGATCTTGAGAAGGGAAAAATCATTGAGGAAATTGAGCAGAAGCTTGATATGAAAAAACTCTCATCTTTTTCAAACACCATTTGTCTAGCAGACTTGGGATGTTCCACTGGACCAAACACTTTCATGATAATTCAAGATATACTAGAAGCTATGCAACGCAAACACCGATCCCAGTTATCCCAATCATGTCCCAAAGCTGATCAACAATACTCTGATGATCATCAAATACCTGAATTTCAAGTCTTCTTTAACGACCTAAAGGCGAATGACTTCAATACCCTCTTCACCTCTCTCCCACAAGACAGGAAATACTTTGCAGCCGGCGTGCCCGGTTCTTTCCATCACCGTTTGTTTCCCAAGTCGTCTATCCACTTTGTACATACCTCATCTAGCCTTCATTGGATCTCCAAGTCGCCTGAAGTATTGCAAAACAAGGACTCTCCGGCATGGAACAAGGGCAGGATTCACTACACAAGTGCCCCGGATGAAGTGGTTGATGCTTATGCGTCGCAGTTTGCCGAGGATATGAAGAACTTTTTGAATGTTAGGGCCAAAGAGCTTGTGCATGGAGGAATGATGGTAATGATCTTGTCTGGAATCCCCAAAGGGATGCCTTATTCTGAAATCCCAGCGGGTATGTTGTACAATTGTATGTCGTCTAGCCTCATGGATATGGCAAAAGAGGGAATAATTGAAGAAAGTGAAGTGGATTCCTTCAACTTGCCATACTATGCAGCCTCGTTAGAGGAGATGGAGGAGATAGTAAAGAAAAACGGGTGTTTTAAGATAGAGAAAATGGAGTCGTCAAACCCAGCAGCATGGCTGAAAGGTCGTCCAGTTGACATACCAACTTTGGTGAAACATGTAAGGGCTGCAGTGGAGGGGATGTTTGCCAAACACTTTGGAATTGAGGTCATGGATGAAATGTTCGGAAGAGTGACCGATAAACTTCTAGACATTTCCGACCTCGTAAACTCACAACGCGACGAGAAAAGTCAGTTGCTTGCTGTTCTCAAACGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

363

Amino Acids

40.8

Weight (kDa)

5.91

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68040
fragaria_vesca	FvH4_4g33400 FvH4_4g33400 FvH4_4g33400
malus_domestica	MD13G1019200.v1.1 MD16G1016900.v1.1 MD16G1017000.v1.1 MD16G1017100.v1.1
prunus_persica	Prupe.1G334700_v2.0.a1 Prupe.1G334700_v2.0.a1 Prupe.1G334700_v2.0.a1
pyrus_communis	pycom13g01630
rosa_chinensis	RchiOBHm_Chr4g0442671
rosa_laevigata	RLG00000005993
rosa_multiflora	Rmu_ssc0000204.1_g000027
rosa_roxburghii	Rroxscaffold_5G00383480
rosa_rugosa	Rorug04G0342000 Rorug04G0342100
rosa_samantha	Rh4BG407500 Rh4CG422900 Rh4DG401600
rosa_wichuraiana	Rw4G034100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1047
AciI	CCGC	2 cut(s)	60, 695
AclWI	GGATC	2 cut(s)	225, 473
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	2 cut(s)	441, 707
AflIII	ACRYGT	1 cut(s)	925
AgsI	TTSAA	7 cut(s)	135, 197, 302, 337, 604, 758, 781
AloI	GAACNNNNNNTCC	2 cut(s)	974, 1006
AluBI	AGCT	5 cut(s)	27, 106, 212, 260, 622
AluI	AGCT	5 cut(s)	27, 106, 212, 260, 622
AlwI	GGATC	2 cut(s)	225, 473
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	4 cut(s)	380, 797, 878, 935
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	173, 612
AsuC2I	CCSGG	2 cut(s)	393, 545
AsuHPI	GGTGA	3 cut(s)	340, 398, 931
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	2 cut(s)	393, 544
BbsI	GAAGAC	1 cut(s)	298
BbvI	GCAGC	4 cut(s)	392, 809, 890, 922
BccI	CCATC	3 cut(s)	411, 634, 808
BclI	TGATCA	2 cut(s)	262, 280
BcnI	CCSGG	2 cut(s)	393, 545
BfaI	CTAG	5 cut(s)	149, 206, 453, 723, 1016
BfmI	CTRYAG	1 cut(s)	936
BisI	GCNGC	4 cut(s)	381, 798, 879, 936
BlsI	GCNGC	4 cut(s)	382, 799, 880, 937
Bme1390I	CCNGG	2 cut(s)	393, 545
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	173, 612
BmrFI	CCNGG	2 cut(s)	393, 545
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	550, 663
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	2 cut(s)	393, 545
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	543, 582
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 935, 965
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	175, 235, 899
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	543, 582
BseGI	GGATG	5 cut(s)	167, 553, 678, 954, 988
BseJI	GATNNNNATC	1 cut(s)	282
BseNI	ACTGG	3 cut(s)	175, 235, 899
BseRI	GAGGAG	3 cut(s)	31, 824, 833
BseSI	GKGCMC	2 cut(s)	393, 544
BseXI	GCAGC	4 cut(s)	392, 809, 890, 922
BseYI	CCCAGC	2 cut(s)	691, 874
Bsh1236I	CGCG	1 cut(s)	1047
BshFI	GGCC	1 cut(s)	614
BsiSI	CCGG	4 cut(s)	384, 393, 506, 545
BslFI	GGGAC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	614
Bsp1286I	GDGCHC	2 cut(s)	393, 544
Bsp1407I	TGTACA	2 cut(s)	439, 705
Bsp143I	GATC	6 cut(s)	64, 230, 262, 280, 465, 648
BspACI	CCGC	2 cut(s)	60, 695
BspANI	GGCC	1 cut(s)	614
BspFNI	CGCG	1 cut(s)	1047
BspHI	TCATGA	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	940
BspPI	GGATC	2 cut(s)	225, 473
BsrFI	RCCGGY	1 cut(s)	383
BsrGI	TGTACA	2 cut(s)	439, 705
BsrI	ACTGG	3 cut(s)	175, 235, 899
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	543, 582
BssMI	GATC	6 cut(s)	64, 230, 262, 280, 465, 648
Bst4CI	ACNGT	2 cut(s)	8, 410
Bst6I	CTCTTC	2 cut(s)	350, 991
BstAUI	TGTACA	2 cut(s)	439, 705
BstC8I	GCNNGC	3 cut(s)	385, 389, 1068
BstF5I	GGATG	5 cut(s)	167, 553, 678, 954, 988
BstFNI	CGCG	1 cut(s)	1047
BstKTI	GATC	6 cut(s)	67, 233, 265, 283, 468, 651
BstMBI	GATC	6 cut(s)	64, 230, 262, 280, 465, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	2 cut(s)	391, 543
BstSFI	CTRYAG	1 cut(s)	936
BstSLI	GKGCMC	2 cut(s)	393, 544
BstUI	CGCG	1 cut(s)	1047
BstV1I	GCAGC	4 cut(s)	392, 809, 890, 922
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	465
BstXI	CCANNNNNNTGG	1 cut(s)	882
BstYI	RGATCY	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	614
BtsCI	GGATG	5 cut(s)	167, 553, 678, 954, 988
BtsI	GCAGTG	1 cut(s)	945
BtsIMutI	CAGTG	2 cut(s)	168, 945
Cac8I	GCNNGC	3 cut(s)	385, 389, 1068
CciI	TCATGA	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	173, 612
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	440, 706
CviAII	CATG	8 cut(s)	187, 249, 510, 629, 730, 882, 926, 979
CviQI	GTAC	2 cut(s)	440, 706
DpnI	GATC	6 cut(s)	66, 232, 264, 282, 467, 650
DpnII	GATC	6 cut(s)	64, 230, 262, 280, 465, 648
Eam1104I	CTCTTC	2 cut(s)	350, 991
EarI	CTCTTC	2 cut(s)	350, 991
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	501
FaeI	CATG	8 cut(s)	190, 252, 513, 632, 733, 885, 929, 982
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	8 cut(s)	186, 248, 509, 628, 729, 881, 925, 978
FauI	CCCGC	1 cut(s)	688
FbaI	TGATCA	2 cut(s)	262, 280
Fnu4HI	GCNGC	4 cut(s)	381, 798, 879, 936
FokI	GGATG	5 cut(s)	174, 560, 685, 961, 995
Fsp4HI	GCNGC	4 cut(s)	381, 798, 879, 936
FspBI	CTAG	5 cut(s)	149, 206, 453, 723, 1016
GluI	GCNGC	4 cut(s)	381, 798, 879, 936
GsaI	CCCAGC	2 cut(s)	695, 878
HaeIII	GGCC	1 cut(s)	614
HapII	CCGG	4 cut(s)	384, 393, 506, 545
HgaI	GACGC	1 cut(s)	558
Hin1II	CATG	8 cut(s)	190, 252, 513, 632, 733, 885, 929, 982
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	6 cut(s)	56, 500, 526, 660, 773, 863
HpaII	CCGG	4 cut(s)	384, 393, 506, 545
HphI	GGTGA	3 cut(s)	340, 398, 931
Hpy166II	GTNNAC	2 cut(s)	904, 1036
Hpy188I	TCNGA	4 cut(s)	277, 685, 995, 1027
Hpy188III	TCNNGA	5 cut(s)	68, 187, 197, 657, 1016
Hpy8I	GTNNAC	2 cut(s)	904, 1036
Hpy99I	CGWCG	2 cut(s)	574, 1052
HpyAV	CCTTC	3 cut(s)	67, 467, 787
HpyCH4III	ACNGT	2 cut(s)	8, 410
HpyCH4V	TGCA	6 cut(s)	217, 380, 490, 628, 797, 938
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
Hsp92II	CATG	8 cut(s)	190, 252, 513, 632, 733, 885, 929, 982
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Ksp22I	TGATCA	2 cut(s)	262, 280
Kzo9I	GATC	6 cut(s)	64, 230, 262, 280, 465, 648
Lsp1109I	GCAGC	4 cut(s)	392, 809, 890, 922
LweI	GCATC	2 cut(s)	550, 663
MaeI	CTAG	5 cut(s)	149, 206, 453, 723, 1016
MaeIII	GTNAC	1 cut(s)	1000
MalI	GATC	6 cut(s)	66, 232, 264, 282, 467, 650
MboI	GATC	6 cut(s)	64, 230, 262, 280, 465, 648
MboII	GAAGA	5 cut(s)	298, 337, 604, 770, 1008
MfeI	CAATTG	1 cut(s)	709
MflI	RGATCY	1 cut(s)	465
MhlI	GDGCHC	2 cut(s)	393, 544
MluCI	AATT	6 cut(s)	93, 192, 296, 709, 753, 969
MlyI	GAGTC	2 cut(s)	494, 872
MmeI	TCCRAC	1 cut(s)	1050
MroNI	GCCGGC	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	2 cut(s)	312, 846
MslI	CAYNNNNRTG	2 cut(s)	185, 734
MspA1I	CMGCKG	2 cut(s)	62, 695
MspI	CCGG	4 cut(s)	384, 393, 506, 545
MspR9I	CCNGG	2 cut(s)	393, 545
MunI	CAATTG	1 cut(s)	709
MvnI	CGCG	1 cut(s)	1047
MwoI	GCNNNNNNNGC	1 cut(s)	24
NaeI	GCCGGC	1 cut(s)	385
NciI	CCSGG	2 cut(s)	393, 545
NdeII	GATC	6 cut(s)	64, 230, 262, 280, 465, 648
NgoMIV	GCCGGC	1 cut(s)	383
NlaIII	CATG	8 cut(s)	190, 252, 513, 632, 733, 885, 929, 982
NmeAIII	GCCGAG	1 cut(s)	607
NmuCI	GTSAC	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	929
PagI	TCATGA	1 cut(s)	186
PciI	ACATGT	1 cut(s)	925
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PdiI	GCCGGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	4 cut(s)	56, 526, 660, 773
PkrI	GCNGC	4 cut(s)	382, 799, 880, 937
PleI	GAGTC	2 cut(s)	494, 871
PpsI	GAGTC	2 cut(s)	494, 871
PscI	ACATGT	1 cut(s)	925
PspFI	CCCAGC	2 cut(s)	691, 874
PspPI	GGNCC	2 cut(s)	173, 612
PsrI	GAACNNNNNNTAC	2 cut(s)	29, 61
PstI	CTGCAG	1 cut(s)	940
PsuI	RGATCY	1 cut(s)	465
RsaI	GTAC	2 cut(s)	441, 707
RsaNI	GTAC	2 cut(s)	440, 706
RseI	CAYNNNNRTG	2 cut(s)	185, 734
SaqAI	TTAA	2 cut(s)	312, 846
SatI	GCNGC	4 cut(s)	381, 798, 879, 936
Sau3AI	GATC	6 cut(s)	64, 230, 262, 280, 465, 648
Sau96I	GGNCC	2 cut(s)	173, 612
SchI	GAGTC	2 cut(s)	494, 872
ScrFI	CCNGG	2 cut(s)	393, 545
SduI	GDGCHC	2 cut(s)	393, 544
SfaNI	GCATC	2 cut(s)	550, 663
SfcI	CTRYAG	1 cut(s)	936
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	185, 734
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	6 cut(s)	93, 192, 296, 709, 753, 969
SsiI	CCGC	2 cut(s)	60, 695
SspMI	CTAG	5 cut(s)	149, 206, 453, 723, 1016
StyD4I	CCNGG	2 cut(s)	391, 543
TaaI	ACNGT	2 cut(s)	8, 410
TaqII	GACCGA	1 cut(s)	1019
TasI	AATT	6 cut(s)	93, 192, 296, 709, 753, 969
TatI	WGTACW	2 cut(s)	439, 705
TfiI	GAWTC	4 cut(s)	56, 526, 660, 773
Tru1I	TTAA	2 cut(s)	312, 846
Tru9I	TTAA	2 cut(s)	312, 846
TscAI	CASTG	2 cut(s)	175, 945
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	4 cut(s)	380, 797, 878, 935
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	7 cut(s)	17, 128, 175, 449, 564, 605, 999
TspRI	CASTG	2 cut(s)	175, 945
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	296
XbaI	TCTAGA	1 cut(s)	1015
XceI	RCATGY	1 cut(s)	929
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	5 cut(s)	149, 206, 453, 723, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.