Rh4DG401600

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008919
Physical Location & Seq
Forward (+)
61688660 .. 61690745
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG401600.1

Sequence Viewer

Length: 666 bp
ATGGCAAACTCAGTTCCCATGAATGGAAATAATTGCACGAAATCGATAACAGGTTCAATGCCAATGAACAGTGGAAACGGCACTCACAGCTACTCCAAGAACTCCTACTACCAGAAAAAAGCTGCAGAGATTGAAAAGGAAAAGATCATGGAGTTTGCCAAGGAAATGGAGAACTTTCTGGATGCGAGGGCTAAAGAGCTTGTGCCTGGAGGAATGATGGTGATGGTCTTGTCTGGAAATCATAAAGGCATGCCTTATTCTCAAACCCCATCCGGCATGATGTACGATGCGATATCATCGAGCCTCATGGATATGGAAAAAGAGGGATTGATTGATGAAGGTCAAGTGGATGCTTTCAACTTGCCTTTCTACGCTGCCTCACTGGAGGAGTTGGAGGGGCTTGTGGTTAAAAATGGGTGCTTTAGCATTGAGAGGATGGAGTCTTCAAACCCAGCAGCATGGATGAAAGGTCCAGTTGACATACCACAATGGGTGATGCATATACGGGCTGCAATGGAAGGAATGTTCGCCGGACATTTTGGAAGTCATGAGGTTATGGATCAAATGTTCCAACGTTCGGCTCAAAAGCTTTCAGACAAGTCTGACCTTATAAACTCAAGGTGCCACGAGCAAAGTCAGCTGCTTGCTGTTCTCAAGCGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

221

Amino Acids

24.57

Weight (kDa)

5.43

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 31 - 220 2.9e-42 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 621
AclI AACGTT 1 cut(s) 574
AclWI GGATC 1 cut(s) 567
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 23, 577
AgsI TTSAA 4 cut(s) 57, 134, 358, 447
AjnI CCWGG 1 cut(s) 205
AloI GAACNNNNNNTCC 4 cut(s) 509, 541, 551, 583
AluBI AGCT 5 cut(s) 90, 122, 199, 589, 640
AluI AGCT 5 cut(s) 90, 122, 199, 589, 640
AlwI GGATC 1 cut(s) 567
ApeKI GCWGC 5 cut(s) 122, 374, 455, 509, 640
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 232, 505
AvaII GGWCC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 621
BauI CACGAG 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 435
BbvI GCAGC 5 cut(s) 109, 361, 467, 496, 627
BccI CCATC 4 cut(s) 211, 217, 277, 430
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 5 cut(s) 123, 375, 456, 510, 641
BlsI GCNGC 5 cut(s) 124, 376, 457, 511, 642
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 623
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 4 cut(s) 172, 277, 340, 486
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 228, 404
BpuEI CTTGAG 2 cut(s) 601, 638
Bsa29I ATCGAT 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 577
Bse1I ACTGG 2 cut(s) 387, 473
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 5 cut(s) 187, 269, 355, 441, 468
BseLI CCNNNNNNNGG 2 cut(s) 23, 577
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 387, 473
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 5 cut(s) 109, 361, 467, 496, 627
BseYI CCCAGC 1 cut(s) 451
BshNI GGYRCC 1 cut(s) 621
BshVI ATCGAT 1 cut(s) 44
BsiSI CCGG 2 cut(s) 273, 531
BslI CCNNNNNNNGG 2 cut(s) 23, 577
Bsp143I GATC 2 cut(s) 144, 559
BspCNI CTCAG 1 cut(s) 23
BspDI ATCGAT 1 cut(s) 44
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 623
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 621
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 2 cut(s) 387, 473
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 144, 559
BssSI CACGAG 1 cut(s) 626
BssT1I CCWWGG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 626
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 251, 645
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 5 cut(s) 187, 269, 355, 441, 468
BstKTI GATC 2 cut(s) 147, 562
BstMBI GATC 2 cut(s) 144, 559
BstMWI GCNNNNNNNGC 2 cut(s) 87, 637
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 5 cut(s) 109, 361, 467, 496, 627
BstV2I GAAGAC 1 cut(s) 435
BstXI CCANNNNNNTGG 2 cut(s) 166, 459
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 5 cut(s) 187, 269, 355, 441, 468
BtsIMutI CAGTG 2 cut(s) 76, 380
Cac8I GCNNGC 2 cut(s) 251, 645
CciI TCATGA 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 470
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 1 cut(s) 283
CviAII CATG 7 cut(s) 19, 148, 250, 277, 307, 459, 548
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 10
DpnI GATC 2 cut(s) 146, 561
DpnII GATC 2 cut(s) 144, 559
Eco130I CCWWGG 1 cut(s) 159
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 205
EcoRV GATATC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 7 cut(s) 22, 151, 253, 280, 310, 462, 551
FatI CATG 7 cut(s) 18, 147, 249, 276, 306, 458, 547
Fnu4HI GCNGC 5 cut(s) 123, 375, 456, 510, 641
FokI GGATG 5 cut(s) 194, 256, 362, 448, 475
Fsp4HI GCNGC 5 cut(s) 123, 375, 456, 510, 641
GluI GCNGC 5 cut(s) 123, 375, 456, 510, 641
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 2 cut(s) 228, 404
HapII CCGG 2 cut(s) 273, 531
Hin1II CATG 7 cut(s) 22, 151, 253, 280, 310, 462, 551
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 1 cut(s) 440
HpaII CCGG 2 cut(s) 273, 531
HphI GGTGA 2 cut(s) 232, 505
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 2 cut(s) 595, 604
Hpy188III TCNNGA 3 cut(s) 179, 234, 548
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 332, 512
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 4 cut(s) 36, 125, 499, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 637
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 7 cut(s) 22, 151, 253, 280, 310, 462, 551
Kzo9I GATC 2 cut(s) 144, 559
Lsp1109I GCAGC 5 cut(s) 109, 361, 467, 496, 627
LweI GCATC 4 cut(s) 172, 277, 340, 486
MaeII ACGT 1 cut(s) 574
MalI GATC 2 cut(s) 146, 561
MboI GATC 2 cut(s) 144, 559
MboII GAAGA 1 cut(s) 435
MluCI AATT 1 cut(s) 31
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 2 cut(s) 372, 595
MnlI CCTC 9 cut(s) 180, 203, 314, 316, 379, 388, 388, 426, 544
Mph1103I ATGCAT 1 cut(s) 501
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 640
MspI CCGG 2 cut(s) 273, 531
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 87, 637
NdeII GATC 2 cut(s) 144, 559
NlaIII CATG 7 cut(s) 22, 151, 253, 280, 310, 462, 551
NlaIV GGNNCC 1 cut(s) 623
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 253
PaeI GCATGC 1 cut(s) 253
PagI TCATGA 1 cut(s) 547
PkrI GCNGC 5 cut(s) 124, 376, 457, 511, 642
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PsiI TTATAA 1 cut(s) 611
Psp1406I AACGTT 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 623
PspPI GGNCC 1 cut(s) 470
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
PstI CTGCAG 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 640
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 5 cut(s) 123, 375, 456, 510, 641
Sau3AI GATC 2 cut(s) 144, 559
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 207
SfaNI GCATC 4 cut(s) 172, 277, 340, 486
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 616, 653
SmoI CTYRAG 2 cut(s) 616, 653
SphI GCATGC 1 cut(s) 253
Sse9I AATT 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 1 cut(s) 577
TaqI TCGA 2 cut(s) 44, 299
TasI AATT 1 cut(s) 31
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 2 cut(s) 76, 387
TseI GCWGC 5 cut(s) 122, 374, 455, 509, 640
TspDTI ATGAA 4 cut(s) 35, 80, 351, 479
TspRI CASTG 2 cut(s) 76, 387
VpaK11BI GGWCC 1 cut(s) 470
XceI RCATGY 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.