Rorug04G0342000

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008919
Physical Location & Seq
Forward (+)
51469497 .. 51469880
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0342000.1

Sequence Viewer

Length: 264 bp
ATGGGACTTGTTAATCAAAAACTAGTTCTCTTTGCAACATCTATAAAAGAAAACATTCTATTCGGAAAGGAAGGAGCTTCGATGGAAAATGTCACAGATGCAGCCAAGGCAGCAAATGCTCATGACTTCATTGTTAAACCATCCGAAGGATATGAAACTCAATTGTCTGGAGGGCAAAAGCAAAGGGTTGCTATAGCAAGGCCTCTCCTTAGAAATCCCATAATCCTTCTGCTTGACGAAGCCACAAGCGCTCTCGATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

87

Amino Acids

9.32

Weight (kDa)

5.71

Isoelectric Point (pI)

20.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 83 3.9e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 146
AhlI ACTAGT 1 cut(s) 22
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Aor51HI AGCGCT 1 cut(s) 250
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 101, 110
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 113, 122
BccI CCATC 2 cut(s) 76, 148
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 252
BisI GCNGC 2 cut(s) 102, 111
BlsI GCNGC 2 cut(s) 103, 112
BmsI GCATC 2 cut(s) 88, 247
BpmI CTGGAG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 113, 122
BshFI GGCC 1 cut(s) 202
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 202
BspANI GGCC 1 cut(s) 202
BspHI TCATGA 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 1 cut(s) 251
BstMWI GCNNNNNNNGC 5 cut(s) 107, 110, 116, 248, 257
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 113, 122
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 140
CciI TCATGA 1 cut(s) 121
CfoI GCGC 1 cut(s) 251
CviAII CATG 1 cut(s) 122
CviJI RGCY 4 cut(s) 77, 104, 202, 242
CviKI_1 RGCY 4 cut(s) 77, 104, 202, 242
DdeI CTNAG 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 202
Eco47III AGCGCT 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 125
FaiI YATR 6 cut(s) 44, 123, 153, 194, 221, 262
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 102, 111
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 102, 111
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 250
GluI GCNGC 2 cut(s) 102, 111
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 1 cut(s) 202
HhaI GCGC 1 cut(s) 251
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 65, 145
Hpy188III TCNNGA 3 cut(s) 122, 168, 254
HpyAV CCTTC 3 cut(s) 65, 140, 236
HpyCH4V TGCA 3 cut(s) 35, 101, 260
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 110, 116, 248, 257
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 1 cut(s) 153
Lsp1109I GCAGC 2 cut(s) 113, 122
LweI GCATC 2 cut(s) 88, 247
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 91
MfeI CAATTG 1 cut(s) 161
MluCI AATT 1 cut(s) 161
MnlI CCTC 2 cut(s) 164, 213
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 2 cut(s) 12, 135
MunI CAATTG 1 cut(s) 161
MwoI GCNNNNNNNGC 5 cut(s) 107, 110, 116, 248, 257
NlaIII CATG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 262
PagI TCATGA 1 cut(s) 121
PceI AGGCCT 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 54
PkrI GCNGC 2 cut(s) 103, 112
SaqAI TTAA 2 cut(s) 12, 135
SatI GCNGC 2 cut(s) 102, 111
SetI ASST 1 cut(s) 79
SfaNI GCATC 2 cut(s) 88, 247
SfcI CTRYAG 1 cut(s) 192
SgeI CNNG 8 cut(s) 20, 35, 118, 134, 180, 210, 245, 258
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 1 cut(s) 161
SseBI AGGCCT 1 cut(s) 202
SspMI CTAG 1 cut(s) 23
StuI AGGCCT 1 cut(s) 202
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 2 cut(s) 80, 255
TasI AATT 1 cut(s) 161
Tru1I TTAA 2 cut(s) 12, 135
Tru9I TTAA 2 cut(s) 12, 135
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 101, 110
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 118, 168
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.