Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0008919

Physical Location & Seq

Genomic Coordinates Reverse (-)

143602 .. 145604

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgccaatgaacggtggaaacggcactcacagctactccaagaactcctactaccagaaaaaagctgcagagattgaaaaggtaaagatcatggaggtgattgctgagaagcttgatatgaaaaacctctcctcaatgtcaagcactattcgtattgcagacttgggatgttcaactgggccaaacactttcgtgacaatgcaaaacatactagaagccatgcaacaaaagtaccgaccccaatctgctcctgatgatcatcaaacaatgcctgaatttcaagtgttcttcaacgacctagtgttgaatgacttcaataccctgtttacctctcttcccaaaggcaagcaatactttgcagcaggggtaccggggtcttttcacgaccgtttgtttccggagtcctctatccaccttgtgcacgcctcactttccctccactggctctctaagttgccagaagagttgcaagacaaggcctctccagcatggaacaaagggaggattcactacacaagtgcccctaatgaagtggttgatgcttacatgtcccagtttgccaaggaaatggagaactttctggatgcgagggctaaagagcttgtgcctggaggaatgatggtgatggtcttgtctggaaatcataaaggcatgccttattctcaaaccgcatccggcatgatgtacgatgcgatatcatcgagcctcatggatatggaaaaagagggattgattgatgaaggtcaagtggatgctttcaacttgcctttctacgctgcctcactggaggagttggaggggcttgtggttaaaaatgggtgctttagcattgagaggatggagtcttcaaacccagcagcatggatgaaaggtccacttgacataacacaatgggtgatgcatatacgggctgcaatggaaggaatgttcgccggacattttggaagtcatgaggttatggatcaaatgttccaacgttcggctcaaaagctttcagacaagtctgaccttataaactcaaggtgccacgagcaaagtcagctgcttgctgttctcaagcgtaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

355

Amino Acids

39.78

Weight (kDa)

5.75

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68040
fragaria_vesca	FvH4_4g33400 FvH4_4g33400 FvH4_4g33400
malus_domestica	MD13G1019200.v1.1 MD16G1016900.v1.1 MD16G1017000.v1.1 MD16G1017100.v1.1
prunus_persica	Prupe.1G334700_v2.0.a1 Prupe.1G334700_v2.0.a1 Prupe.1G334700_v2.0.a1
pyrus_communis	pycom13g01630
rosa_chinensis	RchiOBHm_Chr4g0442671
rosa_laevigata	RLG00000005993
rosa_multiflora	Rmu_ssc0000204.1_g000027
rosa_roxburghii	Rroxscaffold_5G00383480
rosa_rugosa	Rorug04G0342000 Rorug04G0342100
rosa_samantha	Rh4BG407500 Rh4CG422900 Rh4DG401600
rosa_wichuraiana	Rw4G034100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1013
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	2 cut(s)	367, 1023
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	1 cut(s)	669
AclI	AACGTT	1 cut(s)	976
AclWI	GGATC	1 cut(s)	969
AcsI	RAATTY	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	418
AfaI	GTAC	3 cut(s)	233, 369, 686
AfiI	CCNNNNNNNGG	3 cut(s)	11, 441, 979
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	8 cut(s)	77, 174, 281, 292, 307, 316, 760, 849
AjnI	CCWGG	1 cut(s)	607
AleI	CACNNNNGTG	1 cut(s)	191
AloI	GAACNNNNNNTCC	4 cut(s)	911, 943, 953, 985
AluBI	AGCT	6 cut(s)	33, 65, 112, 601, 991, 1042
AluI	AGCT	6 cut(s)	33, 65, 112, 601, 991, 1042
Alw21I	GWGCWC	1 cut(s)	423
Alw44I	GTGCAC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	969
Aor13HI	TCCGGA	1 cut(s)	397
AoxI	GGCC	2 cut(s)	179, 477
ApaLI	GTGCAC	1 cut(s)	419
ApeKI	GCWGC	6 cut(s)	65, 359, 776, 857, 911, 1042
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	179, 872
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	3 cut(s)	109, 634, 907
AvaII	GGWCC	1 cut(s)	872
BaeGI	GKGCMC	2 cut(s)	423, 523
BaeI	ACNNNNGTAYC	4 cut(s)	215, 248, 359, 392
BanI	GGYRCC	2 cut(s)	367, 1023
BauI	CACGAG	1 cut(s)	1028
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	6 cut(s)	52, 371, 763, 869, 898, 1029
BccI	CCATC	3 cut(s)	613, 619, 832
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	609
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	372
BfaI	CTAG	2 cut(s)	212, 299
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	6 cut(s)	66, 360, 777, 858, 912, 1043
BlsI	GCNGC	6 cut(s)	67, 361, 778, 859, 913, 1044
Bme1390I	CCNGG	2 cut(s)	372, 609
Bme18I	GGWCC	1 cut(s)	872
BmgT120I	GGNCC	2 cut(s)	179, 872
BmiI	GGNNCC	2 cut(s)	369, 1025
BmrFI	CCNGG	2 cut(s)	372, 609
BmrI	ACTGGG	2 cut(s)	186, 547
BmsI	GCATC	6 cut(s)	529, 574, 679, 680, 742, 888
BmuI	ACTGGG	2 cut(s)	186, 547
BpiI	GAAGAC	1 cut(s)	837
BpmI	CTGGAG	3 cut(s)	468, 630, 806
BpuEI	CTTGAG	2 cut(s)	1003, 1040
BpuMI	CCSGG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	371, 561
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 420, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 441, 979
Bse1I	ACTGG	4 cut(s)	181, 446, 553, 789
Bse3DI	GCAATG	1 cut(s)	921
Bse8I	GATNNNNATC	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	371, 561
BseGI	GGATG	6 cut(s)	173, 589, 671, 757, 843, 870
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	11, 441, 979
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	4 cut(s)	181, 446, 553, 789
BseRI	GAGGAG	2 cut(s)	121, 803
BseSI	GKGCMC	2 cut(s)	423, 523
BseXI	GCAGC	6 cut(s)	52, 371, 763, 869, 898, 1029
BseYI	CCCAGC	1 cut(s)	853
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	181, 479
BshNI	GGYRCC	2 cut(s)	367, 1023
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	4 cut(s)	371, 398, 675, 933
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	3 cut(s)	11, 441, 979
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	181, 479
Bsp1286I	GDGCHC	2 cut(s)	423, 523
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	87, 256, 961
BspACI	CCGC	1 cut(s)	669
BspANI	GGCC	2 cut(s)	181, 479
BspCNI	CTCAG	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	2 cut(s)	369, 1025
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	969
BspT107I	GGYRCC	2 cut(s)	367, 1023
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	4 cut(s)	181, 446, 553, 789
BssECI	CCNNGG	2 cut(s)	371, 561
BssMI	GATC	3 cut(s)	87, 256, 961
BssSI	CACGAG	1 cut(s)	1028
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	1028
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	2 cut(s)	14, 389
Bst6I	CTCTTC	2 cut(s)	339, 456
BstC8I	GCNNGC	4 cut(s)	347, 423, 653, 1047
BstDEI	CTNAG	2 cut(s)	105, 450
BstF5I	GGATG	6 cut(s)	173, 589, 671, 757, 843, 870
BstKTI	GATC	3 cut(s)	90, 259, 964
BstMBI	GATC	3 cut(s)	87, 256, 961
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 485, 1039
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	2 cut(s)	550, 655
BstSCI	CCNGG	2 cut(s)	370, 607
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	2 cut(s)	423, 523
BstV1I	GCAGC	6 cut(s)	52, 371, 763, 869, 898, 1029
BstV2I	GAAGAC	1 cut(s)	837
BstXI	CCANNNNNNTGG	2 cut(s)	568, 861
BsuRI	GGCC	2 cut(s)	181, 479
BtsCI	GGATG	6 cut(s)	173, 589, 671, 757, 843, 870
BtsIMutI	CAGTG	2 cut(s)	439, 782
Cac8I	GCNNGC	4 cut(s)	347, 423, 653, 1047
CciI	TCATGA	1 cut(s)	949
Cfr13I	GGNCC	2 cut(s)	179, 872
Csp6I	GTAC	3 cut(s)	232, 368, 685
CviAII	CATG	9 cut(s)	91, 220, 489, 547, 652, 679, 709, 861, 950
CviQI	GTAC	3 cut(s)	232, 368, 685
DdeI	CTNAG	2 cut(s)	105, 450
DpnI	GATC	3 cut(s)	89, 258, 963
DpnII	GATC	3 cut(s)	87, 256, 961
DraIII	CACNNNGTG	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	339, 456
EarI	CTCTTC	2 cut(s)	339, 456
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	872
EcoRII	CCWGG	1 cut(s)	607
EcoRV	GATATC	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	9 cut(s)	94, 223, 492, 550, 655, 682, 712, 864, 953
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 861, 893
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	9 cut(s)	90, 219, 488, 546, 651, 678, 708, 860, 949
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	6 cut(s)	66, 360, 777, 858, 912, 1043
FokI	GGATG	6 cut(s)	180, 596, 658, 764, 850, 877
Fsp4HI	GCNGC	6 cut(s)	66, 360, 777, 858, 912, 1043
FspBI	CTAG	2 cut(s)	212, 299
GluI	GCNGC	6 cut(s)	66, 360, 777, 858, 912, 1043
GsaI	CCCAGC	1 cut(s)	857
GsuI	CTGGAG	3 cut(s)	468, 630, 806
HaeIII	GGCC	2 cut(s)	181, 479
HapII	CCGG	4 cut(s)	371, 398, 675, 933
Hin1II	CATG	9 cut(s)	94, 223, 492, 550, 655, 682, 712, 864, 953
HindIII	AAGCTT	2 cut(s)	110, 989
HinfI	GANTC	3 cut(s)	401, 505, 842
HpaII	CCGG	4 cut(s)	371, 398, 675, 933
HphI	GGTGA	3 cut(s)	109, 634, 907
Hpy166II	GTNNAC	3 cut(s)	327, 421, 875
Hpy188I	TCNGA	2 cut(s)	997, 1006
Hpy188III	TCNNGA	7 cut(s)	193, 251, 383, 398, 581, 636, 950
Hpy8I	GTNNAC	3 cut(s)	327, 421, 875
HpyAV	CCTTC	2 cut(s)	734, 914
HpyCH4III	ACNGT	2 cut(s)	14, 389
HpyCH4IV	ACGT	1 cut(s)	976
HpyCH4V	TGCA	9 cut(s)	68, 158, 202, 223, 359, 421, 469, 901, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 485, 1039
HpyF3I	CTNAG	2 cut(s)	105, 450
HpySE526I	ACGT	1 cut(s)	976
Hsp92II	CATG	9 cut(s)	94, 223, 492, 550, 655, 682, 712, 864, 953
Kpn2I	TCCGGA	1 cut(s)	397
KpnI	GGTACC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	87, 256, 961
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	6 cut(s)	52, 371, 763, 869, 898, 1029
LweI	GCATC	6 cut(s)	529, 574, 679, 680, 742, 888
MaeI	CTAG	2 cut(s)	212, 299
MaeII	ACGT	1 cut(s)	976
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	89, 258, 963
MboI	GATC	3 cut(s)	87, 256, 961
MboII	GAAGA	4 cut(s)	280, 326, 473, 837
MhlI	GDGCHC	2 cut(s)	423, 523
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	410, 851
MmeI	TCCRAC	2 cut(s)	774, 997
Mph1103I	ATGCAT	1 cut(s)	903
MroI	TCCGGA	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	810
MslI	CAYNNNNRTG	3 cut(s)	95, 191, 713
MspA1I	CMGCKG	1 cut(s)	1042
MspI	CCGG	4 cut(s)	371, 398, 675, 933
MspR9I	CCNGG	2 cut(s)	372, 609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	3 cut(s)	30, 485, 1039
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	87, 256, 961
NlaIII	CATG	9 cut(s)	94, 223, 492, 550, 655, 682, 712, 864, 953
NlaIV	GGNNCC	2 cut(s)	369, 1025
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	903
NspI	RCATGY	2 cut(s)	550, 655
OliI	CACNNNNGTG	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	655
PagI	TCATGA	1 cut(s)	949
PceI	AGGCCT	1 cut(s)	479
PciI	ACATGT	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	6 cut(s)	67, 361, 778, 859, 913, 1044
PleI	GAGTC	2 cut(s)	409, 850
PpsI	GAGTC	2 cut(s)	409, 850
PscI	ACATGT	1 cut(s)	546
PsiI	TTATAA	1 cut(s)	1013
Psp1406I	AACGTT	1 cut(s)	976
Psp6I	CCWGG	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	369, 1025
PspPI	GGNCC	2 cut(s)	179, 872
PsrI	GAACNNNNNNTAC	2 cut(s)	35, 67
PstI	CTGCAG	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	1042
RsaI	GTAC	3 cut(s)	233, 369, 686
RsaNI	GTAC	3 cut(s)	232, 368, 685
RseI	CAYNNNNRTG	3 cut(s)	95, 191, 713
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	6 cut(s)	66, 360, 777, 858, 912, 1043
Sau3AI	GATC	3 cut(s)	87, 256, 961
Sau96I	GGNCC	2 cut(s)	179, 872
SchI	GAGTC	2 cut(s)	410, 851
ScrFI	CCNGG	2 cut(s)	372, 609
SduI	GDGCHC	2 cut(s)	423, 523
SfaNI	GCATC	6 cut(s)	529, 574, 679, 680, 742, 888
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	872
SmiMI	CAYNNNNRTG	3 cut(s)	95, 191, 713
SmlI	CTYRAG	2 cut(s)	1018, 1055
SmoI	CTYRAG	2 cut(s)	1018, 1055
SphI	GCATGC	1 cut(s)	655
Sse9I	AATT	1 cut(s)	275
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	1 cut(s)	669
SspMI	CTAG	2 cut(s)	212, 299
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	2 cut(s)	370, 607
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	14, 389
TaiI	ACGT	1 cut(s)	979
TaqI	TCGA	1 cut(s)	701
TasI	AATT	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	2 cut(s)	446, 789
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	6 cut(s)	65, 359, 776, 857, 911, 1042
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	5 cut(s)	23, 134, 543, 753, 881
TspRI	CASTG	2 cut(s)	446, 789
VneI	GTGCAC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	872
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	2 cut(s)	550, 655
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	2 cut(s)	212, 299
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.