pycom13g11290

ADP-ribosylation factor GTPase-activating protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
7718639 .. 7722436
3798 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11290.4

Sequence Viewer

Length: 1269 bp
ATGCATTTCACTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACTATCCATGGAGGAAAATGCAGAAACGTTGAGGGAGAGAAGTTTGAGATTTTACAAAGGATGCCGAAAATACACGGAAGGGCTTGGGGAAGCATATGATGGGGACATTGCTTTTGCTAGCGCCCTAGAAACTTTTGGCGGGGGGCATAATGATCCAATTAGTGTGGCTTTTGGAGGTCCTGTTATGACTAAATTTACTATCGCATTGAGAGAAATTGGGACGTACAAGGAAGTTCTTCGATCCCAGGTTGAGCTTATGCTAAATGACAGACTCTTACAATTTGTGAATATTGATTTGCATGAAGTCAAGGAAGCACGGAAACGTTTTGACAAGGCTAGCCTTATTTATGACCAGGCTCGTGAGAAATTTCTCTCTCTGAGAAAAGGCACAAAGAGTGACGTGGTTACCCTTCTTGAGGAGGAACTTCATAATGCAAGAACTACATTTGAGCACGCTCGTTTTAGTCTGGTGACTGCTCTTTCTAATGTTGAAGCGAAAAAGAGGTTTGAATTTCTGGAAGCGGTCAGTGGAACAATGGATGCACATCTTCGTTACTTCAAACAGGGTTATGAGTTGTTGCATCAAATGGAGCCATATATTAATCAGGTCTTGACATATGCTCAACAATCAAGAGAAAGATCGATCTATGAACAGGCTGCTCTTCATGAAAGGATGCAAGATTACCAACGACAGGTTGATCGAGAGAGTAGGTGGTCTTCTAATGGTTCTAATGGATCTCCTAATGGAGATGGGATACAAGCCATTGGTAGAAGTTCACATAAAATGATAGAGGCCGTTATGCAGTCTGCTGCAAAGGGAAAGGTTCAAACCATTAGGCAAGGTTACCTCTCAAAACGTTCCTCAAACTTGAGAGGTGACTGGAAGAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTCTATTACTATCGGAAACAATGCAGCAAACCATCCGGTTCTGGTAGTCAACTTTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTGCTGAGTCGGTGGCTTTCTTCTCATTATCATGGTGGAGTGCATGATGAGAAATCTGTTGCTCATCACACAGTGAATCTGCTTACATCAACTATCAAAGTTGATGCTGACCAGTCAGATCTGAGGTTTTGTTTCAGAATCATTTCACCAACAAAGAATTATACTTTGCAGGCAGAGAGTGCACTTGATCGATCCTCCGATGGATTGGATTGA

Protein Analysis

423

Amino Acids

48.14

Weight (kDa)

9.06

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1062
AciI CCGC 3 cut(s) 37, 186, 569
AclI AACGTT 3 cut(s) 74, 370, 904
AclWI GGATC 4 cut(s) 194, 282, 790, 1242
AcsI RAATTY 3 cut(s) 239, 413, 557
AdeI CACNNNGTG 1 cut(s) 1129
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 463, 739
AgsI TTSAA 4 cut(s) 539, 557, 607, 875
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 2 cut(s) 291, 399
AluBI AGCT 3 cut(s) 16, 301, 1045
AluI AGCT 3 cut(s) 16, 301, 1045
Alw21I GWGCWC 2 cut(s) 501, 1240
Alw44I GTGCAC 1 cut(s) 1236
AlwI GGATC 4 cut(s) 194, 282, 790, 1242
AoxI GGCC 1 cut(s) 840
ApaLI GTGCAC 1 cut(s) 1236
ApeKI GCWGC 3 cut(s) 704, 857, 990
ApoI RAATTY 3 cut(s) 239, 413, 557
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AseI ATTAAT 1 cut(s) 648
Asp700I GAANNNNTTC 2 cut(s) 282, 1198
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 529, 935, 1194
AsuNHI GCTAGC 2 cut(s) 164, 383
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 1240
BarI GAAGNNNNNNTAC 2 cut(s) 748, 780
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 2 cut(s) 501, 1240
BbvI GCAGC 3 cut(s) 691, 844, 1002
BccI CCATC 4 cut(s) 140, 791, 1006, 1250
BceAI ACGGC 1 cut(s) 827
BciT130I CCWGG 2 cut(s) 293, 401
BciVI GTATCC 1 cut(s) 795
BfaI CTAG 3 cut(s) 165, 173, 384
BfoI RGCGCY 1 cut(s) 171
BfuI GTATCC 1 cut(s) 795
BglII AGATCT 1 cut(s) 1174
BisI GCNGC 3 cut(s) 705, 858, 991
BlsI GCNGC 3 cut(s) 706, 859, 992
Bme1390I CCNGG 2 cut(s) 293, 401
Bme18I GGWCC 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 2 cut(s) 293, 401
BmsI GCATC 5 cut(s) 98, 577, 637, 711, 1150
BmtI GCTAGC 2 cut(s) 168, 387
BpiI GAAGAC 1 cut(s) 756
BplI GAGNNNNNCTC 2 cut(s) 951, 983
BpuEI CTTGAG 2 cut(s) 482, 937
Bsa29I ATCGAT 2 cut(s) 689, 1246
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 3 cut(s) 54, 291, 958
BsaWI WCCGGW 1 cut(s) 1001
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 739
Bse1I ACTGG 2 cut(s) 932, 1168
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 2 cut(s) 293, 401
BseCI ATCGAT 2 cut(s) 689, 1246
BseDI CCNNGG 3 cut(s) 54, 291, 958
BseGI GGATG 4 cut(s) 113, 592, 726, 998
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 2 cut(s) 463, 739
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 4 cut(s) 416, 1032, 1052, 1169
BseNI ACTGG 2 cut(s) 932, 1168
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 1240
BseXI GCAGC 3 cut(s) 691, 844, 1002
BshFI GGCC 1 cut(s) 842
BshVI ATCGAT 2 cut(s) 689, 1246
BsiHKAI GWGCWC 2 cut(s) 501, 1240
BsiSI CCGG 1 cut(s) 1002
BslFI GGGAC 2 cut(s) 164, 280
BslI CCNNNNNNNGG 2 cut(s) 463, 739
BsmFI GGGAC 2 cut(s) 164, 280
BsmI GAATGC 1 cut(s) 969
BsnI GGCC 1 cut(s) 842
Bsp1286I GDGCHC 2 cut(s) 501, 1240
Bsp143I GATC 9 cut(s) 199, 287, 686, 690, 745, 782, 1174, 1243, 1247
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 3 cut(s) 37, 186, 569
BspANI GGCC 1 cut(s) 842
BspCNI CTCAG 4 cut(s) 417, 1033, 1053, 1170
BspDI ATCGAT 2 cut(s) 689, 1246
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 1 cut(s) 639
BspOI GCTAGC 2 cut(s) 168, 387
BspPI GGATC 4 cut(s) 194, 282, 790, 1242
BspQI GCTCTTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 2 cut(s) 932, 1168
BssECI CCNNGG 3 cut(s) 54, 291, 958
BssMI GATC 9 cut(s) 199, 287, 686, 690, 745, 782, 1174, 1243, 1247
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 293, 401
Bst4CI ACNGT 1 cut(s) 1129
Bst6I CTCTTC 2 cut(s) 714, 926
BstAPI GCANNNNNTGC 1 cut(s) 1235
BstC8I GCNNGC 5 cut(s) 41, 166, 385, 501, 1227
BstDEI CTNAG 5 cut(s) 12, 425, 1041, 1061, 1178
BstDSI CCRYGG 1 cut(s) 54
BstEII GGTNACC 2 cut(s) 451, 890
BstENI CCTNNNNNAGG 1 cut(s) 461
BstF5I GGATG 4 cut(s) 113, 592, 726, 998
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 9 cut(s) 202, 290, 689, 693, 748, 785, 1177, 1246, 1250
BstMBI GATC 9 cut(s) 199, 287, 686, 690, 745, 782, 1174, 1243, 1247
BstMWI GCNNNNNNNGC 1 cut(s) 1235
BstNI CCWGG 2 cut(s) 293, 401
BstPI GGTNACC 2 cut(s) 451, 890
BstSCI CCNGG 2 cut(s) 291, 399
BstSLI GKGCMC 1 cut(s) 1240
BstV1I GCAGC 3 cut(s) 691, 844, 1002
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 2 cut(s) 782, 1174
BstYI RGATCY 2 cut(s) 782, 1174
Bsu15I ATCGAT 2 cut(s) 689, 1246
BsuI GTATCC 1 cut(s) 795
BsuRI GGCC 1 cut(s) 842
BsuTUI ATCGAT 2 cut(s) 689, 1246
BtgI CCRYGG 1 cut(s) 54
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 4 cut(s) 113, 592, 726, 998
BtsIMutI CAGTG 2 cut(s) 580, 1134
Cac8I GCNNGC 5 cut(s) 41, 166, 385, 501, 1227
CciI TCATGA 1 cut(s) 712
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 224
ClaI ATCGAT 2 cut(s) 689, 1246
Csp6I GTAC 1 cut(s) 271
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 5 cut(s) 55, 347, 713, 1088, 1100
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 5 cut(s) 12, 425, 1041, 1061, 1178
DpnI GATC 9 cut(s) 201, 289, 688, 692, 747, 784, 1176, 1245, 1249
DpnII GATC 9 cut(s) 199, 287, 686, 690, 745, 782, 1174, 1243, 1247
DraIII CACNNNGTG 1 cut(s) 1129
DrdI GACNNNNNNGTC 1 cut(s) 1062
DseDI GACNNNNNNGTC 1 cut(s) 1062
Eam1104I CTCTTC 2 cut(s) 714, 926
EarI CTCTTC 2 cut(s) 714, 926
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 224
Eco91I GGTNACC 2 cut(s) 451, 890
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 224
EcoO65I GGTNACC 2 cut(s) 451, 890
EcoRII CCWGG 2 cut(s) 291, 399
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 58, 350, 716, 1091, 1103
FaqI GGGAC 2 cut(s) 164, 280
FatI CATG 5 cut(s) 54, 346, 712, 1087, 1099
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 2 cut(s) 142, 664
Fnu4HI GCNGC 3 cut(s) 705, 858, 991
FokI GGATG 4 cut(s) 120, 599, 733, 985
Fsp4HI GCNGC 3 cut(s) 705, 858, 991
FspBI CTAG 3 cut(s) 165, 173, 384
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 705, 858, 991
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 842
HapII CCGG 1 cut(s) 1002
HhaI GCGC 1 cut(s) 170
Hin1II CATG 5 cut(s) 58, 350, 716, 1091, 1103
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 1016
HindII GTYRAC 1 cut(s) 1016
HinfI GANTC 5 cut(s) 23, 318, 1063, 1132, 1194
HpaII CCGG 1 cut(s) 1002
HphI GGTGA 3 cut(s) 529, 935, 1194
Hpy166II GTNNAC 3 cut(s) 824, 1016, 1238
Hpy188I TCNGA 8 cut(s) 426, 981, 1029, 1042, 1174, 1179, 1193, 1255
Hpy188III TCNNGA 9 cut(s) 407, 461, 563, 658, 678, 713, 749, 950, 1053
Hpy8I GTNNAC 3 cut(s) 824, 1016, 1238
HpyAV CCTTC 3 cut(s) 119, 467, 930
HpyCH4III ACNGT 1 cut(s) 1129
HpyCH4IV ACGT 5 cut(s) 74, 269, 370, 447, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 1235
HpyF3I CTNAG 5 cut(s) 12, 425, 1041, 1061, 1178
HpySE526I ACGT 5 cut(s) 74, 269, 370, 447, 904
Hsp92II CATG 5 cut(s) 58, 350, 716, 1091, 1103
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 9 cut(s) 199, 287, 686, 690, 745, 782, 1174, 1243, 1247
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 3 cut(s) 691, 844, 1002
LweI GCATC 5 cut(s) 98, 577, 637, 711, 1150
MaeI CTAG 3 cut(s) 165, 173, 384
MaeII ACGT 5 cut(s) 74, 269, 370, 447, 904
MaeIII GTNAC 6 cut(s) 443, 451, 517, 599, 890, 923
MalI GATC 9 cut(s) 201, 289, 688, 692, 747, 784, 1176, 1245, 1249
MboI GATC 9 cut(s) 199, 287, 686, 690, 745, 782, 1174, 1243, 1247
MboII GAAGA 6 cut(s) 275, 587, 701, 756, 943, 1068
MflI RGATCY 2 cut(s) 782, 1174
MhlI GDGCHC 2 cut(s) 501, 1240
MluCI AATT 7 cut(s) 204, 239, 261, 326, 413, 557, 1213
MlyI GAGTC 3 cut(s) 17, 312, 1072
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 282, 1198
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 1086
MspI CCGG 1 cut(s) 1002
MspR9I CCNGG 2 cut(s) 293, 401
Mva1269I GAATGC 1 cut(s) 969
MvaI CCWGG 2 cut(s) 293, 401
MwoI GCNNNNNNNGC 1 cut(s) 1235
NcoI CCATGG 1 cut(s) 54
NdeI CATATG 2 cut(s) 142, 664
NdeII GATC 9 cut(s) 199, 287, 686, 690, 745, 782, 1174, 1243, 1247
NheI GCTAGC 2 cut(s) 164, 383
NlaIII CATG 5 cut(s) 58, 350, 716, 1091, 1103
NlaIV GGNNCC 1 cut(s) 639
NmeAIII GCCGAG 1 cut(s) 983
NmuCI GTSAC 3 cut(s) 443, 517, 923
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 714
PctI GAATGC 1 cut(s) 969
PdmI GAANNNNTTC 2 cut(s) 282, 1198
PfeI GAWTC 2 cut(s) 1132, 1194
PkrI GCNGC 3 cut(s) 706, 859, 992
PleI GAGTC 3 cut(s) 17, 312, 1071
PpsI GAGTC 3 cut(s) 17, 312, 1071
PpuMI RGGWCCY 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 648
Psp1406I AACGTT 3 cut(s) 74, 370, 904
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 291, 399
PspEI GGTNACC 2 cut(s) 451, 890
PspGI CCWGG 2 cut(s) 291, 399
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
PsuI RGATCY 2 cut(s) 782, 1174
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 1086
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 3 cut(s) 705, 858, 991
Sau3AI GATC 9 cut(s) 199, 287, 686, 690, 745, 782, 1174, 1243, 1247
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 3 cut(s) 17, 312, 1072
ScrFI CCNGG 2 cut(s) 293, 401
SduI GDGCHC 2 cut(s) 501, 1240
SfaNI GCATC 5 cut(s) 98, 577, 637, 711, 1150
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 2 cut(s) 461, 916
SmoI CTYRAG 2 cut(s) 461, 916
Sse9I AATT 7 cut(s) 204, 239, 261, 326, 413, 557, 1213
SsiI CCGC 3 cut(s) 37, 186, 569
SspI AATATT 1 cut(s) 337
SspMI CTAG 3 cut(s) 165, 173, 384
StyD4I CCNGG 2 cut(s) 291, 399
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 1129
TaiI ACGT 5 cut(s) 77, 272, 373, 450, 907
TaqI TCGA 5 cut(s) 18, 286, 689, 748, 1246
TasI AATT 7 cut(s) 204, 239, 261, 326, 413, 557, 1213
TfiI GAWTC 2 cut(s) 1132, 1194
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 2 cut(s) 580, 1134
TseFI GTSAC 3 cut(s) 443, 517, 923
TseI GCWGC 3 cut(s) 704, 857, 990
Tsp45I GTSAC 3 cut(s) 443, 517, 923
TspDTI ATGAA 5 cut(s) 363, 464, 701, 711, 729
TspGWI ACGGA 2 cut(s) 137, 379
TspRI CASTG 2 cut(s) 580, 1134
VneI GTGCAC 1 cut(s) 1236
VpaK11BI GGWCC 1 cut(s) 224
VspI ATTAAT 1 cut(s) 648
XagI CCTNNNNNAGG 1 cut(s) 461
XapI RAATTY 3 cut(s) 239, 413, 557
XmnI GAANNNNTTC 2 cut(s) 282, 1198
XspI CTAG 3 cut(s) 165, 173, 384
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.