Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008303

Physical Location & Seq

Genomic Coordinates Reverse (-)

39669928 .. 39670284

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0231600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCATGCTGCATCACCAAAGCAGTGTGAGCTGCTTGCTATTTGTGCAGGTGTTGCTTTTCTCTCCTCCCTTCAAATTCAAAATGTGGTTATTGAAAGTGACTGCATGGAGGCCATCAATGAAGCTTGTAGTACAGAATATGCTTTACTCGCAAATGGAGGACTTATAGATGACATTCAATCTACTTTAAGTCGTTTACAGGGAGTGAAAATATGTCACACTCCAAAAGTTTGCAATATGGTAGAACAACGCCTAGCTGCACTGGGTTTTGAAGCAGAAATAGGTACCGTTTGGTTGGACTATGCTCCTACATGTATCCTTGACGTGCTACAACACGATTATACCCAACTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

118

Amino Acids

12.81

Weight (kDa)

4.42

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	3 - 87	1.2e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13300
fragaria_vesca	FvH4_4g22770 FvH4_4g22770
malus_domestica	MD13G1129800.v1.1 MD16G1130100.v1.1
prunus_persica	Prupe.1G216500_v2.0.a1
pyrus_communis	pycom13g11290 pycom16g11080
rosa_chinensis	RchiOBHm_Chr4g0428991
rosa_laevigata	RLG00000007106
rosa_multiflora	Rmu_sc0008629.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370650
rosa_rugosa	Rorug04G0231400 Rorug04G0231500 Rorug04G0231600 Rorug04G0231700 Rorug04G0231800
rosa_samantha	Rh4AG287900 Rh4BG293900 Rh4CG309500 Rh4DG290900
rosa_wichuraiana	Rw0G014080 Rw4G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	38
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	75
AfaI	GTAC	2 cut(s)	133, 286
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	5 cut(s)	74, 80, 95, 179, 272
AjiI	CACGTC	1 cut(s)	325
AluBI	AGCT	3 cut(s)	31, 125, 257
AluI	AGCT	3 cut(s)	31, 125, 257
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	8, 31, 257
ApoI	RAATTY	1 cut(s)	75
Asp718I	GGTACC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	18, 244
BccI	CCATC	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	326
BfaI	CTAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	9, 32, 258
BlsI	GCNGC	3 cut(s)	10, 33, 259
BmgBI	CACGTC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	18, 244
BsgI	GTGCAG	2 cut(s)	66, 243
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	6, 36
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 44, 53, 149
BstNSI	RCATGY	2 cut(s)	8, 315
BstV1I	GCAGC	2 cut(s)	18, 244
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 260
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	6, 36
Csp6I	GTAC	2 cut(s)	132, 285
CviAII	CATG	3 cut(s)	5, 106, 312
CviJI	RGCY	4 cut(s)	31, 113, 125, 257
CviKI_1	RGCY	4 cut(s)	31, 113, 125, 257
CviQI	GTAC	2 cut(s)	132, 285
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 109, 315
FaiI	YATR	9 cut(s)	6, 107, 141, 167, 214, 239, 303, 313, 342
FatI	CATG	3 cut(s)	4, 105, 311
Fnu4HI	GCNGC	3 cut(s)	9, 32, 258
Fsp4HI	GCNGC	3 cut(s)	9, 32, 258
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	3 cut(s)	9, 32, 258
HaeIII	GGCC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	8, 109, 315
HindIII	AAGCTT	1 cut(s)	123
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	6 cut(s)	4, 11, 47, 105, 234, 260
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 44, 53, 149
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	8, 109, 315
KpnI	GGTACC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	33, 185, 248
Lsp1109I	GCAGC	2 cut(s)	18, 244
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	98, 215
MfeI	CAATTG	1 cut(s)	352
MluCI	AATT	2 cut(s)	75, 352
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	76, 103, 152
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	188
MunI	CAATTG	1 cut(s)	352
MwoI	GCNNNNNNNGC	4 cut(s)	28, 44, 53, 149
NlaIII	CATG	3 cut(s)	8, 109, 315
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	98, 215
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 315
PaeI	GCATGC	1 cut(s)	8
PaqCI	CACCTGC	1 cut(s)	38
PciI	ACATGT	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	10, 33, 259
PscI	ACATGT	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	286
RsaI	GTAC	2 cut(s)	133, 286
RsaNI	GTAC	2 cut(s)	132, 285
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	3 cut(s)	9, 32, 258
SetI	ASST	6 cut(s)	33, 52, 127, 259, 286, 327
SfaNI	GCATC	1 cut(s)	20
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	75, 352
SspMI	CTAG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	327
TasI	AATT	2 cut(s)	75, 352
TatI	WGTACW	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	2 cut(s)	29, 267
TseFI	GTSAC	2 cut(s)	98, 215
TseI	GCWGC	3 cut(s)	8, 31, 257
Tsp45I	GTSAC	2 cut(s)	98, 215
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	29, 267
XapI	RAATTY	1 cut(s)	75
XceI	RCATGY	2 cut(s)	8, 315
XspI	CTAG	1 cut(s)	254
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.