Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008303

Physical Location & Seq

Genomic Coordinates Reverse (-)

39670291 .. 39670644

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0231700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGCTTCAAAGAGTGGATGCTTGAAAGAGTACAGCATCTAAAGCCTGAGATGCTTGAAAAGCTATTGATGGTTATCCGGGCCTTATGCAAGAATCGAAATAATGTCTTGTGGTCTGGCAAAGCTCAAATTGACCAAGACTTGATTCTCAGCTGCTTTGCTTGGCTGAATGATTTTCAAAAAGCTCGAAGTGGGACAACTCAATCCAAGAAGATGCAAAACACGAAGTGGAAGCCAGCTGAAACAGGTTTTAAACTAAACGTAGATTATGCATTTATTCCAAACCAAAGCCATGGTGGAATTGGAGGTGTTCTTCAGGACTCAAGTGGCCAATTCAAGGCAGCTTTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

117

Amino Acids

13.38

Weight (kDa)

9.55

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13300
fragaria_vesca	FvH4_4g22770 FvH4_4g22770
malus_domestica	MD13G1129800.v1.1 MD16G1130100.v1.1
prunus_persica	Prupe.1G216500_v2.0.a1
pyrus_communis	pycom13g11290 pycom16g11080
rosa_chinensis	RchiOBHm_Chr4g0428991
rosa_laevigata	RLG00000007106
rosa_multiflora	Rmu_sc0008629.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370650
rosa_rugosa	Rorug04G0231400 Rorug04G0231500 Rorug04G0231600 Rorug04G0231700 Rorug04G0231800
rosa_samantha	Rh4AG287900 Rh4BG293900 Rh4CG309500 Rh4DG290900
rosa_wichuraiana	Rw0G014080 Rw4G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	299
AdeI	CACNNNGTG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	5 cut(s)	10, 26, 59, 179, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	7 cut(s)	6, 64, 125, 153, 185, 239, 344
AluI	AGCT	7 cut(s)	6, 64, 125, 153, 185, 239, 344
AoxI	GGCC	2 cut(s)	81, 328
ApeKI	GCWGC	2 cut(s)	153, 341
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	154, 342
BlsI	GCNGC	2 cut(s)	155, 343
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	4 cut(s)	9, 42, 46, 204
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	24
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	39, 163
BseXI	GCAGC	1 cut(s)	140
BshFI	GGCC	2 cut(s)	83, 330
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	83, 330
Bsp19I	CCATGG	1 cut(s)	292
BspANI	GGCC	2 cut(s)	83, 330
BspCNI	CTCAG	2 cut(s)	40, 162
BssECI	CCNNGG	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	48, 149
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 52, 61
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	83, 330
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	48, 149
DraI	TTTAAA	1 cut(s)	253
DraIII	CACNNNGTG	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	296
FaiI	YATR	3 cut(s)	88, 270, 294
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	154, 342
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	154, 342
GluI	GCNGC	2 cut(s)	154, 342
HaeIII	GGCC	2 cut(s)	83, 330
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	296
HinfI	GANTC	3 cut(s)	94, 145, 320
HpaII	CCGG	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	90, 217, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 52, 61
HpyF3I	CTNAG	2 cut(s)	48, 149
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	60, 92, 102, 231, 249, 302
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	4 cut(s)	9, 42, 46, 204
MaeII	ACGT	1 cut(s)	261
MboII	GAAGA	2 cut(s)	223, 305
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	3 cut(s)	129, 300, 332
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	1 cut(s)	299
Mox20I	TGGCCA	1 cut(s)	330
Mph1103I	ATGCAT	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	330
MspA1I	CMGCKG	2 cut(s)	153, 239
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	43, 52, 61
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	292
NlaIII	CATG	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	94, 145
PkrI	GCNGC	2 cut(s)	155, 343
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	81
PvuII	CAGCTG	2 cut(s)	153, 239
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	154, 342
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	80
SfaNI	GCATC	4 cut(s)	9, 42, 46, 204
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	3 cut(s)	129, 300, 332
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	292
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	97, 187
TasI	AATT	3 cut(s)	129, 300, 332
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	94, 145
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	2 cut(s)	153, 341
XcmI	CCANNNNNNNNNTGG	2 cut(s)	293, 299
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.