Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008303

Physical Location & Seq

Genomic Coordinates Reverse (-)

39661843 .. 39663136

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0231400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTTCCTCATCATTTCTTTGCCTTACTCTCCTTTCCTCACTCGTCTTCTTCATCGCCACTCCATCACTAGCCGAAACATCTTTCCGGCCCAAAGCCCTCGTTCTTCCGGTAGCCAAACACTCTGCCACTCACCAATACCTCACCAGCATCAAGCAAAGAACCCCTCTTGTTCCTGTTAGACTAACCCTAGACCTCGGCGGCTACAACAACAACACATGCAGTGTCCTCCCAGACAACTCCGTGATCCCCACGTCCGGCAACGGCGGGGAGGTAGGTCAAGACGTCGTCTCCCTCCATTCCATAGATGGGTCTAACCCTACCACACTAGTTTCTGTTCCGAACTTCCTCTTCGCTTGTGCTGAAACTTTTCTATTGGACCGCCTTGCAAGTGGTGTCAAAGGTATGGCTGGTCTTGGTAGAGCTAAAATTGGACTTCCTTCTCTATTTGCTTCCGCTTTTAGCTTCAAAAGAAAATTCGCCATTTGCTTGCCCTCCTCAACAAAATCATACGGTGCCGTTTTCTTCGGAGATGGGCCTTACAACCTTCTTCCTGGGATTGACGTCTCTCAATCTCTTATTTACACCCCATTGCTCCTCAACCCTAGTGACACCCGTAGCACCATTCGGAGCTTGCTTCAACTCAACCAACATTGTCAGCACGCGTGTTGGCCTGGCTGTGCCTACCATCGACCTTGTGTTGCAGAGCGAGAGCGTGTACTGGAGAATCTTTGGTGCAAACTCGATGGTGCAGGTGACCAAGGACGTCCTGTGTTTTTAGGGTTTGTGGACAATGGTCAGAGCCCGAGTAATCCTAGAACTAATATTGTGATCGGAGGCCATCAGATTGAGGACAATCTTCTTCAGTTCGATTTAGCTTCTTCTAGGCTTGGCTTCAGCTCCTCTCTTTTGTTCAGACAAACAACTTGCGCCAACTTCAATTTCACATCTGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

319

Amino Acids

34.33

Weight (kDa)

8.53

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	70 - 178	7.2e-24	Xylanase inhibitor N-terminal
TAXi_C	PF14541	260 - 300	4.1e-10	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13300
fragaria_vesca	FvH4_4g22770 FvH4_4g22770
malus_domestica	MD13G1129800.v1.1 MD16G1130100.v1.1
prunus_persica	Prupe.1G216500_v2.0.a1
pyrus_communis	pycom13g11290 pycom16g11080
rosa_chinensis	RchiOBHm_Chr4g0428991
rosa_laevigata	RLG00000007106
rosa_multiflora	Rmu_sc0008629.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370650
rosa_rugosa	Rorug04G0231400 Rorug04G0231500 Rorug04G0231600 Rorug04G0231700 Rorug04G0231800
rosa_samantha	Rh4AG287900 Rh4BG293900 Rh4CG309500 Rh4DG290900
rosa_wichuraiana	Rw0G014080 Rw4G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	743
AatII	GACGTC	3 cut(s)	288, 567, 769
Acc36I	ACCTGC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	515
AccII	CGCG	1 cut(s)	665
AciI	CCGC	4 cut(s)	201, 267, 382, 456
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	2 cut(s)	848, 880
AcyI	GRCGYC	3 cut(s)	285, 564, 766
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	257, 309
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	3 cut(s)	469, 641, 940
AhlI	ACTAGT	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	255
AjnI	CCWGG	2 cut(s)	553, 673
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AluBI	AGCT	5 cut(s)	425, 465, 633, 878, 900
AluI	AGCT	5 cut(s)	425, 465, 633, 878, 900
Alw26I	GTCTC	2 cut(s)	295, 571
AlwI	GGATC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	805
AoxI	GGCC	4 cut(s)	89, 536, 671, 838
ApoI	RAATTY	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	932
AspS9I	GGNCC	3 cut(s)	90, 379, 536
AsuHPI	GGTGA	3 cut(s)	125, 136, 767
AvaI	CYCGRG	1 cut(s)	805
AvaII	GGWCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	40
BccI	CCATC	6 cut(s)	73, 302, 527, 696, 740, 849
BceAI	ACGGC	2 cut(s)	280, 503
BciT130I	CCWGG	2 cut(s)	555, 675
BcoDI	GTCTC	2 cut(s)	295, 571
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	6 cut(s)	71, 191, 329, 606, 816, 885
BfuAI	ACCTGC	1 cut(s)	743
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	555, 675
Bme18I	GGWCC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	805
BmgBI	CACGTC	1 cut(s)	255
BmgT120I	GGNCC	3 cut(s)	90, 379, 536
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	2 cut(s)	555, 675
BmsI	GCATC	1 cut(s)	159
BoxI	GACNNNNGTC	1 cut(s)	795
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	743
BsaHI	GRCGYC	3 cut(s)	285, 564, 766
BsaJI	CCNNGG	3 cut(s)	196, 554, 760
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 309
Bse1I	ACTGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	590
BseBI	CCWGG	2 cut(s)	555, 675
BseDI	CCNNGG	3 cut(s)	196, 554, 760
BseLI	CCNNNNNNNGG	2 cut(s)	257, 309
BseMI	GCAATG	1 cut(s)	590
BseNI	ACTGG	1 cut(s)	726
BseRI	GAGGAG	3 cut(s)	487, 587, 892
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	665
BshFI	GGCC	4 cut(s)	91, 538, 673, 840
BshNI	GGYRCC	1 cut(s)	515
BsiHKCI	CYCGRG	1 cut(s)	805
BsiSI	CCGG	3 cut(s)	88, 110, 258
BslI	CCNNNNNNNGG	2 cut(s)	257, 309
BsmAI	GTCTC	2 cut(s)	295, 571
BsmBI	CGTCTC	2 cut(s)	295, 571
BsnI	GGCC	4 cut(s)	91, 538, 673, 840
BsoBI	CYCGRG	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	806
Bsp143I	GATC	2 cut(s)	246, 831
BspACI	CCGC	4 cut(s)	201, 267, 382, 456
BspANI	GGCC	4 cut(s)	91, 538, 673, 840
BspFNI	CGCG	1 cut(s)	665
BspLI	GGNNCC	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	743
BspPI	GGATC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	726
BssECI	CCNNGG	3 cut(s)	196, 554, 760
BssMI	GATC	2 cut(s)	246, 831
BssNI	GRCGYC	3 cut(s)	285, 564, 766
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	2 cut(s)	555, 675
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	3 cut(s)	285, 564, 766
BstC8I	GCNNGC	3 cut(s)	491, 635, 663
BstEII	GGTNACC	1 cut(s)	755
BstFNI	CGCG	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	932
BstKTI	GATC	2 cut(s)	249, 834
BstMAI	GTCTC	2 cut(s)	295, 571
BstMBI	GATC	2 cut(s)	246, 831
BstNI	CCWGG	2 cut(s)	555, 675
BstNSI	RCATGY	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	795
BstPI	GGTNACC	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	553, 673
BstUI	CGCG	1 cut(s)	665
BstV2I	GAAGAC	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	91, 538, 673, 840
BtgZI	GCGATG	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	743
Cac8I	GCNNGC	3 cut(s)	491, 635, 663
CfoI	GCGC	1 cut(s)	932
Cfr13I	GGNCC	3 cut(s)	90, 379, 536
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	1 cut(s)	219
CviQI	GTAC	1 cut(s)	719
DpnI	GATC	2 cut(s)	248, 833
DpnII	GATC	2 cut(s)	246, 831
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	760
Eco24I	GRGCYC	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	848, 880
Eco88I	CYCGRG	1 cut(s)	805
Eco91I	GGTNACC	1 cut(s)	755
EcoO65I	GGTNACC	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	553, 673
EcoT14I	CCWWGG	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	806
ErhI	CCWWGG	1 cut(s)	760
Esp3I	CGTCTC	2 cut(s)	295, 571
FaeI	CATG	1 cut(s)	222
FaiI	YATR	5 cut(s)	220, 305, 407, 511, 958
FatI	CATG	1 cut(s)	218
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	806
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	6 cut(s)	71, 191, 329, 606, 816, 885
GlaI	GCGC	1 cut(s)	931
GluI	GCNGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	4 cut(s)	91, 538, 673, 840
HapII	CCGG	3 cut(s)	88, 110, 258
HhaI	GCGC	1 cut(s)	932
Hin1I	GRCGYC	3 cut(s)	285, 564, 766
Hin1II	CATG	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	930
HinP1I	GCGC	1 cut(s)	930
HinfI	GANTC	1 cut(s)	727
HpaII	CCGG	3 cut(s)	88, 110, 258
HphI	GGTGA	3 cut(s)	125, 136, 767
Hpy166II	GTNNAC	2 cut(s)	719, 790
Hpy188I	TCNGA	7 cut(s)	342, 530, 630, 801, 836, 846, 917
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	719, 790
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	450, 557
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	4 cut(s)	254, 285, 564, 766
HpyCH4V	TGCA	6 cut(s)	222, 389, 704, 738, 752, 956
HpySE526I	ACGT	4 cut(s)	254, 285, 564, 766
Hsp92I	GRCGYC	3 cut(s)	285, 564, 766
Hsp92II	CATG	1 cut(s)	222
HspAI	GCGC	1 cut(s)	930
Kzo9I	GATC	2 cut(s)	246, 831
LmnI	GCTCC	3 cut(s)	600, 630, 905
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	6 cut(s)	71, 191, 329, 606, 816, 885
MaeII	ACGT	4 cut(s)	254, 285, 564, 766
MaeIII	GTNAC	2 cut(s)	608, 755
MalI	GATC	2 cut(s)	248, 833
MboI	GATC	2 cut(s)	246, 831
MboII	GAAGA	9 cut(s)	40, 43, 98, 343, 517, 542, 851, 854, 873
MhlI	GDGCHC	1 cut(s)	806
MluCI	AATT	3 cut(s)	429, 476, 940
MluI	ACGCGT	1 cut(s)	663
MroXI	GAANNNNTTC	1 cut(s)	369
MspI	CCGG	3 cut(s)	88, 110, 258
MspR9I	CCNGG	2 cut(s)	555, 675
MvaI	CCWGG	2 cut(s)	555, 675
MvnI	CGCG	1 cut(s)	665
NdeII	GATC	2 cut(s)	246, 831
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	1 cut(s)	517
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	608, 755
NspI	RCATGY	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	743
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	727
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	203
PshAI	GACNNNNGTC	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	553, 673
PspEI	GGTNACC	1 cut(s)	755
PspGI	CCWGG	2 cut(s)	553, 673
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	3 cut(s)	90, 379, 536
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	2 cut(s)	246, 831
Sau96I	GGNCC	3 cut(s)	90, 379, 536
ScrFI	CCNGG	2 cut(s)	555, 675
SduI	GDGCHC	1 cut(s)	806
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	379
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	3 cut(s)	429, 476, 940
SsiI	CCGC	4 cut(s)	201, 267, 382, 456
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	6 cut(s)	71, 191, 329, 606, 816, 885
StyD4I	CCNGG	2 cut(s)	553, 673
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	4 cut(s)	257, 288, 567, 769
TaqI	TCGA	3 cut(s)	691, 744, 870
TasI	AATT	3 cut(s)	429, 476, 940
TatI	WGTACW	1 cut(s)	718
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	727
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	608, 755
Tsp45I	GTSAC	2 cut(s)	608, 755
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	229
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	6 cut(s)	71, 191, 329, 606, 816, 885
ZraI	GACGTC	3 cut(s)	286, 565, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.