Rorug04G0231500

BAR domain of APPL family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
39665295 .. 39666638
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0231500.1

Sequence Viewer

Length: 1344 bp
ATGGCTTCCTCATCCTTCCGCCACCTTTTCTTTTGCTCACTAGCTATCATTTTCCACATGATATTCGTCATCATCCCCTCTGAAGCCAAAACTTCATTTAGACCCAAGGCCCTTGTCCTTCCGGTATCCAAACACACTTCCGGCGCAATCCAATACCTCACAAGCATCAAGCAAAGAACTCCTCTAGTCCCTGTGAGACTAACCCTCGATCTCGGCGGTACATTCCTTTGGGTAGATTGCGAGGACCGCTATGTCTCTGCTACCTACAAGCCTACCCGTTGCGGATCAGCGCAATGCTCACTCGCAAGGTCCAAGCGTTGTTTCGAGTGCTTGTCTCCACCTAGACCAGGCTGCTACAACAACACATGTAATCTCATGTCATTAAACTCTGTGCTCGGATCGGGAGGTAACTTCGATCAGGTCGGTCAAGATGTTATCTCACTTCACTCCACAGATGGGTCTAATCCTACCAAGATAGTTTCTATTCCCAACTTACTGTTCGTTTGCAGCCAAACATTTCTCTTGACACAACTTGCACCTGGTGTCAAGGGTATTGCTGGCCTTGGCAGGACTAAAATTGGGCTCCCTTCCCAATTTGCTTCCACTTTTAGCTTCAAAAGAAAATTCGCCGTTTGCTTGCCCTCCTCAAGAAGATCATACGGTGTCGTATTCTTCGGGGACGGTCCTTATAATCTGCTTCCCGGTATTGATGTATCTAAGTCTCTAATCTACACCCCGTTGATCGTCAACCCTGTAACTACTGGGGCTAATTATGAAGAAGGCGAGCCTTCCTCAGAATATTTCATCAACGTAACGTCAATCAAGATCAACGGAAAGGTTGTTTCCGGATTCAACACTTCCTTGCTGACAATCAACAAAGATGGGTATGGAGGCACAAAGATTAGCAGCGTCAATCCTTACACAGTCATGGAGACCTCGATCTACAACGCTTTCGTTGATCTCTTTACTAAAGAACTCTCTGGAGTGCCAAGAGTGACACCCGTAGAACCATTCGGAGTGTGCTTCAACTCAACCAATCTCGGTAGTACTCGGGTTGGCCCGCCGGTGCCTACCATTGATCTGGTGTTGCAGAGCGAGAGCGTGTACTGGAGGATCTTTGGGGCAAACTCGATGGTGCAGGTGAGCCAGGACGTGCTGTGCTTAGGGTTTGTGGATAACGGTCAAAGCCCGAGTAACCCTAGAACTAATATTGTGATTGGTGCGCATCAAATTGAGGATAATCTTCTTCAGTTTGATTTGGCTTCTTCTAGGCTGGGATTCAGCTCCTCTCTCTTGTTCCGACAGACCACTTGCGCTAACTTCAACTTCACTTCTGTTGCTTAG

Protein Analysis

447

Amino Acids

48.5

Weight (kDa)

8.9

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 52 - 227 9.7e-42 Xylanase inhibitor N-terminal
TAXi_C PF14541 266 - 428 6.3e-59 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
AarI CACCTGC 1 cut(s) 1129
AasI GACNNNNNNGTC 1 cut(s) 251
Acc16I TGCGCA 1 cut(s) 1224
Acc36I ACCTGC 1 cut(s) 1129
AccB1I GGYRCC 1 cut(s) 1066
AccIII TCCGGA 1 cut(s) 845
AciI CCGC 5 cut(s) 19, 216, 247, 282, 1061
AclWI GGATC 3 cut(s) 292, 406, 1121
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 2 cut(s) 102, 1232
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 3 cut(s) 220, 1048, 1106
AfiI CCNNNNNNNGG 2 cut(s) 347, 456
AflIII ACRYGT 1 cut(s) 365
AgsI TTSAA 4 cut(s) 616, 853, 1027, 1324
AjiI CACGTC 1 cut(s) 1153
AjnI CCWGG 3 cut(s) 346, 538, 1146
AjuI GAANNNNNNNTTGG 4 cut(s) 305, 337, 482, 514
AluBI AGCT 3 cut(s) 44, 612, 1284
AluI AGCT 3 cut(s) 44, 612, 1284
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 5 cut(s) 190, 259, 339, 726, 926
AlwI GGATC 3 cut(s) 292, 406, 1121
Ama87I CYCGRG 2 cut(s) 1050, 1189
Aor13HI TCCGGA 1 cut(s) 845
AoxI GGCC 3 cut(s) 108, 559, 1057
ApeKI GCWGC 3 cut(s) 351, 507, 906
ApoI RAATTY 1 cut(s) 623
AspLEI GCGC 4 cut(s) 146, 292, 1225, 1316
AspS9I GGNCC 5 cut(s) 109, 244, 309, 683, 1058
AsuC2I CCSGG 1 cut(s) 702
AsuHPI GGTGA 1 cut(s) 1153
AvaI CYCGRG 2 cut(s) 1050, 1189
AvaII GGWCC 3 cut(s) 244, 309, 683
BanI GGYRCC 1 cut(s) 1066
BanII GRGCYC 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 338, 519, 918
BccI CCATC 3 cut(s) 449, 875, 1126
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 3 cut(s) 348, 540, 1148
BciVI GTATCC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 702
BcoDI GTCTC 5 cut(s) 190, 259, 339, 726, 926
BfaI CTAG 5 cut(s) 41, 185, 342, 1200, 1269
BfuAI ACCTGC 1 cut(s) 1129
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 3 cut(s) 352, 508, 907
BlsI GCNGC 3 cut(s) 353, 509, 908
BmcAI AGTACT 1 cut(s) 1048
Bme1390I CCNGG 4 cut(s) 348, 540, 702, 1148
Bme18I GGWCC 3 cut(s) 244, 309, 683
BmeT110I CYCGRG 2 cut(s) 1050, 1189
BmgBI CACGTC 1 cut(s) 1153
BmgT120I GGNCC 5 cut(s) 109, 244, 309, 683, 1058
BmiI GGNNCC 2 cut(s) 584, 1068
BmrFI CCNGG 4 cut(s) 348, 540, 702, 1148
BmrI ACTGGG 1 cut(s) 771
BmsI GCATC 2 cut(s) 174, 1234
BmuI ACTGGG 1 cut(s) 771
BplI GAGNNNNNCTC 2 cut(s) 776, 808
BpmI CTGGAG 2 cut(s) 1002, 1129
Bpu10I CCTNAGC 1 cut(s) 1162
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 926
BsaJI CCNNGG 2 cut(s) 105, 562
BsaWI WCCGGW 2 cut(s) 121, 845
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 456
Bse118I RCCGGY 1 cut(s) 1063
Bse1I ACTGG 2 cut(s) 766, 1112
Bse3DI GCAATG 1 cut(s) 299
BseAI TCCGGA 1 cut(s) 845
BseBI CCWGG 3 cut(s) 348, 540, 1148
BseDI CCNNGG 2 cut(s) 105, 562
BseGI GGATG 2 cut(s) 11, 72
BseLI CCNNNNNNNGG 2 cut(s) 347, 456
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 2 cut(s) 766, 1112
BseRI GAGGAG 3 cut(s) 171, 634, 1276
BseXI GCAGC 3 cut(s) 338, 519, 918
BseYI CCCAGC 1 cut(s) 1273
BsgI GTGCAG 1 cut(s) 1157
BshFI GGCC 3 cut(s) 110, 561, 1059
BshNI GGYRCC 1 cut(s) 1066
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 2 cut(s) 1050, 1189
BsiSI CCGG 5 cut(s) 122, 141, 702, 846, 1064
BslFI GGGAC 2 cut(s) 173, 692
BslI CCNNNNNNNGG 2 cut(s) 347, 456
BsmAI GTCTC 5 cut(s) 190, 259, 339, 726, 926
BsmFI GGGAC 2 cut(s) 173, 692
BsnI GGCC 3 cut(s) 110, 561, 1059
Bso31I GGTCTC 1 cut(s) 926
BsoBI CYCGRG 2 cut(s) 1050, 1189
Bsp1286I GDGCHC 2 cut(s) 396, 585
Bsp13I TCCGGA 1 cut(s) 845
BspACI CCGC 5 cut(s) 19, 216, 247, 282, 1061
BspANI GGCC 3 cut(s) 110, 561, 1059
BspCNI CTCAG 1 cut(s) 806
BspEI TCCGGA 1 cut(s) 845
BspLI GGNNCC 2 cut(s) 584, 1068
BspMI ACCTGC 1 cut(s) 1129
BspPI GGATC 3 cut(s) 292, 406, 1121
BspT107I GGYRCC 1 cut(s) 1066
BspTNI GGTCTC 1 cut(s) 926
BsrDI GCAATG 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 1063
BsrI ACTGG 2 cut(s) 766, 1112
BssAI RCCGGY 1 cut(s) 1063
BssECI CCNNGG 2 cut(s) 105, 562
BssT1I CCWWGG 2 cut(s) 105, 562
Bst2UI CCWGG 3 cut(s) 348, 540, 1148
Bst4CI ACNGT 5 cut(s) 498, 662, 683, 925, 1181
BstC8I GCNNGC 4 cut(s) 559, 638, 785, 1061
BstDEI CTNAG 4 cut(s) 717, 793, 1162, 1341
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 11, 72
BstHHI GCGC 4 cut(s) 146, 292, 1225, 1316
BstMAI GTCTC 5 cut(s) 190, 259, 339, 726, 926
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 3 cut(s) 348, 540, 1148
BstNSI RCATGY 1 cut(s) 369
BstSCI CCNGG 4 cut(s) 346, 538, 700, 1146
BstV1I GCAGC 3 cut(s) 338, 519, 918
BstX2I RGATCY 1 cut(s) 1113
BstXI CCANNNNNNTGG 1 cut(s) 1081
BstYI RGATCY 1 cut(s) 1113
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 3 cut(s) 110, 561, 1059
BtrI CACGTC 1 cut(s) 1153
BtsCI GGATG 2 cut(s) 11, 72
BveI ACCTGC 1 cut(s) 1129
Cac8I GCNNGC 4 cut(s) 559, 638, 785, 1061
CfoI GCGC 4 cut(s) 146, 292, 1225, 1316
Cfr10I RCCGGY 1 cut(s) 1063
Cfr13I GGNCC 5 cut(s) 109, 244, 309, 683, 1058
CseI GACGC 1 cut(s) 898
CsiI ACCWGGT 1 cut(s) 538
Csp6I GTAC 3 cut(s) 219, 1047, 1105
CviAII CATG 4 cut(s) 58, 366, 376, 928
CviQI GTAC 3 cut(s) 219, 1047, 1105
DdeI CTNAG 4 cut(s) 717, 793, 1162, 1341
DraIII CACNNNGTG 1 cut(s) 542
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 8
Eco130I CCWWGG 2 cut(s) 105, 562
Eco24I GRGCYC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 926
Eco47I GGWCC 3 cut(s) 244, 309, 683
Eco57I CTGAAG 2 cut(s) 102, 1232
Eco88I CYCGRG 2 cut(s) 1050, 1189
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 346, 538, 1146
EcoT14I CCWWGG 2 cut(s) 105, 562
EcoT38I GRGCYC 1 cut(s) 585
ErhI CCWWGG 2 cut(s) 105, 562
FaeI CATG 4 cut(s) 61, 369, 379, 931
FaiI YATR 9 cut(s) 59, 252, 367, 377, 658, 690, 774, 888, 929
FaqI GGGAC 2 cut(s) 173, 692
FatI CATG 4 cut(s) 57, 365, 375, 927
FauI CCCGC 1 cut(s) 1068
Fnu4HI GCNGC 3 cut(s) 352, 508, 907
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 3 cut(s) 352, 508, 907
FspAI RTGCGCAY 1 cut(s) 1224
FspBI CTAG 5 cut(s) 41, 185, 342, 1200, 1269
FspI TGCGCA 1 cut(s) 1224
GlaI GCGC 4 cut(s) 145, 291, 1224, 1315
GluI GCNGC 3 cut(s) 352, 508, 907
GsaI CCCAGC 1 cut(s) 1277
GsuI CTGGAG 2 cut(s) 1002, 1129
HaeIII GGCC 3 cut(s) 110, 561, 1059
HapII CCGG 5 cut(s) 122, 141, 702, 846, 1064
HgaI GACGC 1 cut(s) 898
HhaI GCGC 4 cut(s) 146, 292, 1225, 1316
Hin1II CATG 4 cut(s) 61, 369, 379, 931
Hin6I GCGC 4 cut(s) 144, 290, 1223, 1314
HinP1I GCGC 4 cut(s) 144, 290, 1223, 1314
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 2 cut(s) 849, 1278
HpaII CCGG 5 cut(s) 122, 141, 702, 846, 1064
HphI GGTGA 1 cut(s) 1153
Hpy166II GTNNAC 2 cut(s) 748, 1105
Hpy188I TCNGA 5 cut(s) 82, 398, 796, 1016, 1301
Hpy188III TCNNGA 7 cut(s) 402, 428, 523, 648, 823, 846, 981
Hpy8I GTNNAC 2 cut(s) 748, 1105
HpyAV CCTTC 5 cut(s) 25, 128, 597, 773, 798
HpyCH4III ACNGT 5 cut(s) 498, 662, 683, 925, 1181
HpyCH4IV ACGT 3 cut(s) 810, 815, 1152
HpyCH4V TGCA 4 cut(s) 507, 536, 1090, 1138
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 4 cut(s) 717, 793, 1162, 1341
HpySE526I ACGT 3 cut(s) 810, 815, 1152
Hsp92II CATG 4 cut(s) 61, 369, 379, 931
HspAI GCGC 4 cut(s) 144, 290, 1223, 1314
Kpn2I TCCGGA 1 cut(s) 845
LmnI GCTCC 2 cut(s) 588, 1289
Lsp1109I GCAGC 3 cut(s) 338, 519, 918
LweI GCATC 2 cut(s) 174, 1234
MabI ACCWGGT 1 cut(s) 538
MaeI CTAG 5 cut(s) 41, 185, 342, 1200, 1269
MaeII ACGT 3 cut(s) 810, 815, 1152
MaeIII GTNAC 5 cut(s) 407, 754, 811, 994, 1193
MboII GAAGA 6 cut(s) 663, 664, 788, 1235, 1238, 1257
MflI RGATCY 1 cut(s) 1113
MhlI GDGCHC 2 cut(s) 396, 585
MluCI AATT 5 cut(s) 576, 593, 623, 769, 1230
MmeI TCCRAC 1 cut(s) 1324
MroI TCCGGA 1 cut(s) 845
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 926
MspI CCGG 5 cut(s) 122, 141, 702, 846, 1064
MspR9I CCNGG 4 cut(s) 348, 540, 702, 1148
MvaI CCWGG 3 cut(s) 348, 540, 1148
MwoI GCNNNNNNNGC 1 cut(s) 246
NciI CCSGG 1 cut(s) 702
NlaIII CATG 4 cut(s) 61, 369, 379, 931
NlaIV GGNNCC 2 cut(s) 584, 1068
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 994
NsbI TGCGCA 1 cut(s) 1224
NspI RCATGY 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 1129
PciI ACATGT 1 cut(s) 365
PfeI GAWTC 2 cut(s) 849, 1278
PkrI GCNGC 3 cut(s) 353, 509, 908
PscI ACATGT 1 cut(s) 365
PsiI TTATAA 1 cut(s) 690
Psp6I CCWGG 3 cut(s) 346, 538, 1146
PspFI CCCAGC 1 cut(s) 1273
PspGI CCWGG 3 cut(s) 346, 538, 1146
PspN4I GGNNCC 2 cut(s) 584, 1068
PspPI GGNCC 5 cut(s) 109, 244, 309, 683, 1058
PsuI RGATCY 1 cut(s) 1113
RsaI GTAC 3 cut(s) 220, 1048, 1106
RsaNI GTAC 3 cut(s) 219, 1047, 1105
RseI CAYNNNNRTG 1 cut(s) 926
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 3 cut(s) 352, 508, 907
Sau96I GGNCC 5 cut(s) 109, 244, 309, 683, 1058
ScaI AGTACT 1 cut(s) 1048
ScrFI CCNGG 4 cut(s) 348, 540, 702, 1148
SduI GDGCHC 2 cut(s) 396, 585
SexAI ACCWGGT 1 cut(s) 538
SfaNI GCATC 2 cut(s) 174, 1234
SgrAI CRCCGGYG 1 cut(s) 1063
SinI GGWCC 3 cut(s) 244, 309, 683
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 5 cut(s) 576, 593, 623, 769, 1230
SsiI CCGC 5 cut(s) 19, 216, 247, 282, 1061
SspI AATATT 2 cut(s) 800, 1210
SspMI CTAG 5 cut(s) 41, 185, 342, 1200, 1269
StyD4I CCNGG 4 cut(s) 346, 538, 700, 1146
StyI CCWWGG 2 cut(s) 105, 562
TaaI ACNGT 5 cut(s) 498, 662, 683, 925, 1181
TaiI ACGT 3 cut(s) 813, 818, 1155
TaqI TCGA 5 cut(s) 207, 324, 414, 938, 1130
TaqII GACCGA 1 cut(s) 413
TasI AATT 5 cut(s) 576, 593, 623, 769, 1230
TatI WGTACW 2 cut(s) 1046, 1104
TfiI GAWTC 2 cut(s) 849, 1278
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 3 cut(s) 351, 507, 906
Tsp45I GTSAC 1 cut(s) 994
TspDTI ATGAA 3 cut(s) 84, 789, 793
TspGWI ACGGA 1 cut(s) 846
VpaK11BI GGWCC 3 cut(s) 244, 309, 683
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 1 cut(s) 623
XceI RCATGY 1 cut(s) 369
XspI CTAG 5 cut(s) 41, 185, 342, 1200, 1269
ZrmI AGTACT 1 cut(s) 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.