pycom13g13220

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0006406
Physical Location & Seq
Forward (+)
9350098 .. 9350337
240 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGAAATCCGTCTGGAACTTCGCCTCTAGGTTGGGACAAACTGTGAAGGACAGCAAGCTGATTTTAACCGAGCTGGGTTTATGTGATCCTCTTATAAAGCATGTCCCTAAGGATTCCGATATGTCATGTATCGAAGATGTCTGGTACGGCAAGAGTTTGATCAACCACGCTGATGACAAAGATGAACTGCTAGTACAGGGATCACTTGGGAATGTGTTTGTTGATCCTAGAGAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

80

Amino Acids

8.91

Weight (kDa)

4.91

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AclWI GGATC 3 cut(s) 80, 208, 218
AfaI GTAC 2 cut(s) 146, 195
AluBI AGCT 2 cut(s) 58, 73
AluI AGCT 2 cut(s) 58, 73
AlwI GGATC 3 cut(s) 80, 208, 218
AxyI CCTNAGG 1 cut(s) 108
BceAI ACGGC 1 cut(s) 163
BclI TGATCA 1 cut(s) 159
BfaI CTAG 4 cut(s) 27, 191, 228, 238
Bse21I CCTNAGG 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 73
BslFI GGGAC 2 cut(s) 48, 89
BsmFI GGGAC 2 cut(s) 48, 89
Bsp143I GATC 4 cut(s) 85, 159, 200, 223
BspPI GGATC 3 cut(s) 80, 208, 218
BssMI GATC 4 cut(s) 85, 159, 200, 223
Bst4CI ACNGT 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 108
BstKTI GATC 4 cut(s) 88, 162, 203, 226
BstMBI GATC 4 cut(s) 85, 159, 200, 223
BstNSI RCATGY 1 cut(s) 104
Bsu36I CCTNAGG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 145, 194
CviAII CATG 2 cut(s) 101, 126
CviJI RGCY 2 cut(s) 58, 73
CviKI_1 RGCY 2 cut(s) 58, 73
CviQI GTAC 2 cut(s) 145, 194
DdeI CTNAG 1 cut(s) 108
DpnI GATC 4 cut(s) 87, 161, 202, 225
DpnII GATC 4 cut(s) 85, 159, 200, 223
Eco81I CCTNAGG 1 cut(s) 108
FaeI CATG 2 cut(s) 104, 129
FaiI YATR 5 cut(s) 82, 95, 102, 122, 127
FaqI GGGAC 2 cut(s) 48, 89
FatI CATG 2 cut(s) 100, 125
FbaI TGATCA 1 cut(s) 159
FspBI CTAG 4 cut(s) 27, 191, 228, 238
GsaI CCCAGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 104, 129
HinfI GANTC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 2 cut(s) 104, 129
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 4 cut(s) 85, 159, 200, 223
LpnPI CCDG 3 cut(s) 59, 127, 182
MaeI CTAG 4 cut(s) 27, 191, 228, 238
MalI GATC 4 cut(s) 87, 161, 202, 225
MboI GATC 4 cut(s) 85, 159, 200, 223
MboII GAAGA 1 cut(s) 146
MnlI CCTC 2 cut(s) 34, 99
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 171
NdeII GATC 4 cut(s) 85, 159, 200, 223
NlaIII CATG 2 cut(s) 104, 129
NspI RCATGY 1 cut(s) 104
PfeI GAWTC 1 cut(s) 113
PsiI TTATAA 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 73
PsrI GAACNNNNNNTAC 2 cut(s) 177, 209
RsaI GTAC 2 cut(s) 146, 195
RsaNI GTAC 2 cut(s) 145, 194
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 4 cut(s) 85, 159, 200, 223
SetI ASST 3 cut(s) 32, 60, 75
SmiMI CAYNNNNRTG 1 cut(s) 171
SspMI CTAG 4 cut(s) 27, 191, 228, 238
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 132
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 17, 198
XceI RCATGY 1 cut(s) 104
XspI CTAG 4 cut(s) 27, 191, 228, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.