Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Forward (+)

18541244 .. 18541933

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGAAAACAATCTGGGAAAAACCTAGGAGTTGATGATGAAGACCCTGAAATGGCGGGAATTGAGGAGCATAGTGAAGATTCTGAAAATGAGGATGACCAGGAGCCCTCTGACTCGGATGACCGAGGGACTCATGATTCGGATGCAGAACAGGACCTGGGAACTGGTTCTCAATCTGCTGTTGAACCATCAATGTGCATGAGGTGCATTTACATGAAATATCTTGTTCATTTGGCTTTTGCATTTTTATTATACATTAACATTATTTCTGTATGCTGTGTTAAGCTCGATGTTAATCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

4.19

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	99, 156
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
Asp700I	GAANNNNTTC	1 cut(s)	166
AspA2I	CCTAGG	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	154
AvrII	CCTAGG	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	101, 158
BfaI	CTAG	2 cut(s)	26, 304
BlnI	CCTAGG	1 cut(s)	25
Bme1390I	CCNGG	2 cut(s)	101, 158
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	101, 158
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	25, 124, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	101, 158
BseDI	CCNNGG	3 cut(s)	25, 124, 157
BseGI	GGATG	3 cut(s)	100, 124, 148
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	25, 124, 157
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	101, 158
BstAPI	GCANNNNNTGC	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	100, 124, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	2 cut(s)	101, 158
BstSCI	CCNGG	2 cut(s)	99, 156
BstV2I	GAAGAC	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	100, 124, 148
CaiI	CAGNNNCTG	1 cut(s)	157
CciI	TCATGA	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	3 cut(s)	134, 199, 214
CviJI	RGCY	3 cut(s)	106, 236, 286
CviKI_1	RGCY	3 cut(s)	106, 236, 286
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	99, 156
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	3 cut(s)	137, 202, 217
FaiI	YATR	6 cut(s)	72, 135, 200, 215, 253, 274
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	133, 198, 213
FauI	CCCGC	1 cut(s)	49
FokI	GGATG	3 cut(s)	107, 131, 155
FriOI	GRGCYC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	26, 304
Hin1II	CATG	3 cut(s)	137, 202, 217
HinfI	GANTC	4 cut(s)	80, 113, 130, 137
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	4 cut(s)	85, 112, 118, 142
Hpy188III	TCNNGA	1 cut(s)	134
HpyCH4V	TGCA	4 cut(s)	146, 198, 207, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	137, 202, 217
LmnI	GCTCC	2 cut(s)	67, 103
LpnPI	CCDG	7 cut(s)	60, 86, 113, 137, 143, 150, 170
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	26, 304
MboII	GAAGA	2 cut(s)	53, 89
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	2 cut(s)	107, 124
MnlI	CCTC	5 cut(s)	58, 85, 118, 119, 195
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	3 cut(s)	258, 282, 294
MslI	CAYNNNNRTG	2 cut(s)	193, 212
MspR9I	CCNGG	2 cut(s)	101, 158
MvaI	CCWGG	2 cut(s)	101, 158
MwoI	GCNNNNNNNGC	1 cut(s)	204
NlaIII	CATG	3 cut(s)	137, 202, 217
NlaIV	GGNNCC	1 cut(s)	105
PagI	TCATGA	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	80, 137
PleI	GAGTC	2 cut(s)	107, 124
PpsI	GAGTC	2 cut(s)	107, 124
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	99, 156
PspGI	CCWGG	2 cut(s)	99, 156
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	157
RseI	CAYNNNNRTG	2 cut(s)	193, 212
SaqAI	TTAA	3 cut(s)	258, 282, 294
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	107, 124
ScrFI	CCNGG	2 cut(s)	101, 158
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	4 cut(s)	27, 159, 206, 288
SfaNI	GCATC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	193, 212
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	26, 304
StyD4I	CCNGG	2 cut(s)	99, 156
StyI	CCWWGG	1 cut(s)	25
TaqI	TCGA	1 cut(s)	288
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 137
Tru1I	TTAA	3 cut(s)	258, 282, 294
Tru9I	TTAA	3 cut(s)	258, 282, 294
TspDTI	ATGAA	3 cut(s)	54, 218, 230
VpaK11BI	GGWCC	1 cut(s)	154
XmaJI	CCTAGG	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	2 cut(s)	26, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.