Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Reverse (-)

20298923 .. 20307063

Gene Structure 8141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGATCGATTTTCAAGAGAGTTTGGAACTGATGACAACGAGGACGAAAAAGAGATAACACCAGCTGGCCAGGACCTGGAAATTGTACGACCTCGTAAGTTGTCAAAGCCTAGTGATTTTCAAGTACTTTTTGGAGGAAATAGCAAGGATGACTTCATGGTTGGCATCAAGTTCACTAAGAGGAGCATAAAGTTGTACAGTGATTTCTATACCTCAGATATGATAGTTGCTTCTTCAATAGGTTTGTTGAAAAAAATTGATGAGGCTAAATTAAACAAAGAAAAGGATGTTGACCATCTTTCTTCCATAGAGGTTCTAGTTATTGATCATGCAGATGTTGTAACGATGCAGAACTGGGACTTTTTGAATTCTGCTGTTGAACAGTTGAACCGCATACCATCTAAACAGCATGGGACTGATGTCATGCGGATAAGACCATGGTACCTGGATGGATATGCACATTTCTATAGGCAAACAATACTCTTGAGTTATTATTCAAATCCGGATATTAACAATTTGTTCAGCAAGCAGTGTAATAATTACCATGGGAAGGTGAAGCTGGTACATGAACATAAAGGAATTCTTCCTAAAGTGATACTTCAAGTCCGCCAGATTTATCAGCGGTTTGATGCAGATTCGATACAACATATTGATGATGCTCGTTTTGAATATTTTACTATGAAGGTCTTCCCAAAGATAAAAGATTCTGTTGAGGGTGGGATTATGATATTTATCAGTTCTTACTTTGAATATGTTCGAGTTCGGAACTTTTTGAAGTCACAGAGTGCGTCCTTCTGTTTACTTCATGAATATGCAGAGCAAAGTGATATTTCTCGTGCACGGGTTTGGTTCTTTGAAGGAAAGCGGAAGATAATGCTTTACACTGAGAGATCACATTTTTACCACAGATATAAGATTCGTGGCATTCAGAATTTAATCCTATATTCTCTGCCCGAGAGAAAGGAATTTTACCCTGAGGTTGTTAATATGCTTGATGGGTCCAATGACATGGCATGCACGGTGCTCTTTTCTCAATTTGACCTCCTTCGGCTCGAGAGAATAGTAGGATTGGCTTCAGCGAAGAGAATGTTGACATCGAAAATGAAAATGTTTTCTTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

375

Amino Acids

43.93

Weight (kDa)

8.67

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UTP25_NTPase-like	PF22916	2 - 185	1.2e-68	UTP25, NTP hydrolase-like domain
Utp25_C	PF06862	196 - 373	6.2e-64	Utp25, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	441
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	5 cut(s)	391, 427, 607, 622, 865
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	4 cut(s)	367, 579, 931, 965
AcuI	CTGAAG	1 cut(s)	1059
AdeI	CACNNNGTG	1 cut(s)	785
AfaI	GTAC	5 cut(s)	87, 126, 197, 443, 564
AfiI	CCNNNNNNNGG	2 cut(s)	76, 550
AjnI	CCWGG	3 cut(s)	69, 75, 444
AluBI	AGCT	2 cut(s)	65, 559
AluI	AGCT	2 cut(s)	65, 559
Alw21I	GWGCWC	2 cut(s)	841, 1026
Alw44I	GTGCAC	1 cut(s)	837
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	2 cut(s)	953, 1052
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	1 cut(s)	67
ApaLI	GTGCAC	1 cut(s)	837
ApoI	RAATTY	4 cut(s)	367, 579, 931, 965
Asp700I	GAANNNNTTC	2 cut(s)	686, 753
Asp718I	GGTACC	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	73, 999
AsuHPI	GGTGA	1 cut(s)	565
AvaI	CYCGRG	2 cut(s)	953, 1052
AvaII	GGWCC	2 cut(s)	73, 999
AxyI	CCTNAGG	1 cut(s)	975
BaeGI	GKGCMC	1 cut(s)	841
BaeI	ACNNNNGTAYC	2 cut(s)	425, 458
BalI	TGGCCA	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	441
BauI	CACGAG	1 cut(s)	834
BbsI	GAAGAC	1 cut(s)	679
Bbv12I	GWGCWC	2 cut(s)	841, 1026
BccI	CCATC	4 cut(s)	303, 406, 443, 989
BciT130I	CCWGG	3 cut(s)	71, 77, 446
BclI	TGATCA	1 cut(s)	325
BfaI	CTAG	2 cut(s)	111, 317
BfmI	CTRYAG	1 cut(s)	466
BmcAI	AGTACT	1 cut(s)	126
Bme1390I	CCNGG	3 cut(s)	71, 77, 446
Bme18I	GGWCC	2 cut(s)	73, 999
BmeT110I	CYCGRG	2 cut(s)	953, 1052
BmgT120I	GGNCC	2 cut(s)	73, 999
BmiI	GGNNCC	2 cut(s)	443, 1000
BmrFI	CCNGG	3 cut(s)	71, 77, 446
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	4 cut(s)	174, 336, 619, 646
BmuI	ACTGGG	1 cut(s)	364
BoxI	GACNNNNGTC	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	679
BpuEI	CTTGAG	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	731
BsaJI	CCNNGG	2 cut(s)	437, 544
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 550
Bse1I	ACTGG	1 cut(s)	359
Bse21I	CCTNAGG	1 cut(s)	975
Bse8I	GATNNNNATC	1 cut(s)	731
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	3 cut(s)	71, 77, 446
BseCI	ATCGAT	1 cut(s)	7
BseDI	CCNNGG	2 cut(s)	437, 544
BseGI	GGATG	3 cut(s)	154, 292, 454
BseJI	GATNNNNATC	1 cut(s)	731
BseLI	CCNNNNNNNGG	2 cut(s)	76, 550
BseMII	CTCAG	3 cut(s)	228, 876, 966
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	841
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	441
BshVI	ATCGAT	1 cut(s)	7
BsiHKAI	GWGCWC	2 cut(s)	841, 1026
BsiHKCI	CYCGRG	2 cut(s)	953, 1052
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	2 cut(s)	371, 427
BslI	CCNNNNNNNGG	2 cut(s)	76, 550
BsmFI	GGGAC	2 cut(s)	371, 427
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	2 cut(s)	953, 1052
Bsp1286I	GDGCHC	2 cut(s)	841, 1026
Bsp13I	TCCGGA	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	4, 325, 890
Bsp19I	CCATGG	2 cut(s)	437, 544
BspACI	CCGC	5 cut(s)	391, 427, 607, 622, 865
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	3 cut(s)	227, 877, 967
BspDI	ATCGAT	1 cut(s)	7
BspEI	TCCGGA	1 cut(s)	502
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	443, 1000
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	441
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	437, 544
BssMI	GATC	3 cut(s)	4, 325, 890
BssSI	CACGAG	1 cut(s)	834
BssT1I	CCWWGG	2 cut(s)	437, 544
Bst2BI	CACGAG	1 cut(s)	834
Bst2UI	CCWGG	3 cut(s)	71, 77, 446
Bst4CI	ACNGT	3 cut(s)	200, 384, 1021
Bst6I	CTCTTC	1 cut(s)	1076
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	67, 527, 1015
BstDEI	CTNAG	4 cut(s)	177, 214, 885, 975
BstDSI	CCRYGG	2 cut(s)	437, 544
BstF5I	GGATG	3 cut(s)	154, 292, 454
BstKTI	GATC	3 cut(s)	7, 328, 893
BstMBI	GATC	3 cut(s)	4, 325, 890
BstNI	CCWGG	3 cut(s)	71, 77, 446
BstNSI	RCATGY	1 cut(s)	1017
BstPAI	GACNNNNGTC	1 cut(s)	419
BstSCI	CCNGG	3 cut(s)	69, 75, 444
BstSFI	CTRYAG	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	841
BstV2I	GAAGAC	1 cut(s)	679
BstXI	CCANNNNNNTGG	1 cut(s)	1009
Bsu15I	ATCGAT	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	975
BsuRI	GGCC	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	7
BtgI	CCRYGG	2 cut(s)	437, 544
BtsCI	GGATG	3 cut(s)	154, 292, 454
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	3 cut(s)	205, 536, 882
Cac8I	GCNNGC	3 cut(s)	67, 527, 1015
CaiI	CAGNNNCTG	1 cut(s)	76
CciI	TCATGA	1 cut(s)	805
Cfr13I	GGNCC	2 cut(s)	73, 999
ClaI	ATCGAT	1 cut(s)	7
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	5 cut(s)	86, 125, 196, 442, 563
CviJI	RGCY	7 cut(s)	65, 69, 109, 266, 559, 1051, 1073
CviKI_1	RGCY	7 cut(s)	65, 69, 109, 266, 559, 1051, 1073
CviQI	GTAC	5 cut(s)	86, 125, 196, 442, 563
DdeI	CTNAG	4 cut(s)	177, 214, 885, 975
DpnI	GATC	3 cut(s)	6, 327, 892
DpnII	GATC	3 cut(s)	4, 325, 890
DraIII	CACNNNGTG	1 cut(s)	785
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	1076
EarI	CTCTTC	1 cut(s)	1076
EciI	GGCGGA	1 cut(s)	596
Eco130I	CCWWGG	2 cut(s)	437, 544
Eco47I	GGWCC	2 cut(s)	73, 999
Eco57I	CTGAAG	1 cut(s)	1059
Eco81I	CCTNAGG	1 cut(s)	975
Eco88I	CYCGRG	2 cut(s)	953, 1052
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRI	GAATTC	2 cut(s)	367, 579
EcoRII	CCWGG	3 cut(s)	69, 75, 444
EcoT14I	CCWWGG	2 cut(s)	437, 544
ErhI	CCWWGG	2 cut(s)	437, 544
FalI	AAGNNNNNCTT	6 cut(s)	137, 169, 567, 599, 582, 614
FaqI	GGGAC	2 cut(s)	371, 427
FbaI	TGATCA	1 cut(s)	325
FokI	GGATG	3 cut(s)	161, 299, 461
FspBI	CTAG	2 cut(s)	111, 317
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	777
HincII	GTYRAC	2 cut(s)	292, 1092
HindII	GTYRAC	2 cut(s)	292, 1092
HinfI	GANTC	3 cut(s)	635, 704, 916
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	5 cut(s)	174, 292, 800, 839, 1092
Hpy188I	TCNGA	3 cut(s)	217, 765, 930
Hpy188III	TCNNGA	6 cut(s)	15, 484, 503, 806, 1054, 1122
Hpy8I	GTNNAC	5 cut(s)	174, 292, 800, 839, 1092
HpyAV	CCTTC	5 cut(s)	544, 676, 802, 851, 1055
HpyCH4III	ACNGT	3 cut(s)	200, 384, 1021
HpyCH4V	TGCA	7 cut(s)	332, 349, 458, 632, 815, 839, 1017
HpyF3I	CTNAG	4 cut(s)	177, 214, 885, 975
Kpn2I	TCCGGA	1 cut(s)	502
KpnI	GGTACC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	4, 325, 890
LmnI	GCTCC	1 cut(s)	183
LweI	GCATC	4 cut(s)	174, 336, 619, 646
MaeI	CTAG	2 cut(s)	111, 317
MaeIII	GTNAC	2 cut(s)	340, 777
MalI	GATC	3 cut(s)	6, 327, 892
MboI	GATC	3 cut(s)	4, 325, 890
MboII	GAAGA	6 cut(s)	225, 294, 575, 679, 880, 1093
MhlI	GDGCHC	2 cut(s)	841, 1026
MlsI	TGGCCA	1 cut(s)	69
MluNI	TGGCCA	1 cut(s)	69
Mox20I	TGGCCA	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	502
MroXI	GAANNNNTTC	2 cut(s)	686, 753
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	4 cut(s)	272, 510, 935, 984
MslI	CAYNNNNRTG	3 cut(s)	333, 651, 810
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	65, 622
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	3 cut(s)	71, 77, 446
Mva1269I	GAATGC	1 cut(s)	924
MvaI	CCWGG	3 cut(s)	71, 77, 446
NcoI	CCATGG	2 cut(s)	437, 544
NdeII	GATC	3 cut(s)	4, 325, 890
NlaIV	GGNNCC	2 cut(s)	443, 1000
NmuCI	GTSAC	1 cut(s)	777
NspI	RCATGY	1 cut(s)	1017
PaeI	GCATGC	1 cut(s)	1017
PaeR7I	CTCGAG	1 cut(s)	1052
PagI	TCATGA	1 cut(s)	805
PctI	GAATGC	1 cut(s)	924
PdmI	GAANNNNTTC	2 cut(s)	686, 753
PfeI	GAWTC	3 cut(s)	635, 704, 916
PflMI	CCANNNNNTGG	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	73
PshAI	GACNNNNGTC	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	69, 75, 444
PspGI	CCWGG	3 cut(s)	69, 75, 444
PspN4I	GGNNCC	2 cut(s)	443, 1000
PspPI	GGNCC	2 cut(s)	73, 999
PspPPI	RGGWCCY	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	5 cut(s)	87, 126, 197, 443, 564
RsaNI	GTAC	5 cut(s)	86, 125, 196, 442, 563
RseI	CAYNNNNRTG	3 cut(s)	333, 651, 810
SaqAI	TTAA	4 cut(s)	272, 510, 935, 984
Sau3AI	GATC	3 cut(s)	4, 325, 890
Sau96I	GGNCC	2 cut(s)	73, 999
ScaI	AGTACT	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	71, 77, 446
SduI	GDGCHC	2 cut(s)	841, 1026
SfaNI	GCATC	4 cut(s)	174, 336, 619, 646
SfcI	CTRYAG	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	1052
SinI	GGWCC	2 cut(s)	73, 999
SlaI	CTCGAG	1 cut(s)	1052
SmiMI	CAYNNNNRTG	3 cut(s)	333, 651, 810
SmlI	CTYRAG	2 cut(s)	484, 1052
SmoI	CTYRAG	2 cut(s)	484, 1052
SphI	GCATGC	1 cut(s)	1017
SsiI	CCGC	5 cut(s)	391, 427, 607, 622, 865
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	2 cut(s)	111, 317
StyD4I	CCNGG	3 cut(s)	69, 75, 444
StyI	CCWWGG	2 cut(s)	437, 544
TaaI	ACNGT	3 cut(s)	200, 384, 1021
TaqI	TCGA	5 cut(s)	7, 638, 757, 1053, 1097
TatI	WGTACW	2 cut(s)	124, 195
TfiI	GAWTC	3 cut(s)	635, 704, 916
Tru1I	TTAA	4 cut(s)	272, 510, 935, 984
Tru9I	TTAA	4 cut(s)	272, 510, 935, 984
TscAI	CASTG	3 cut(s)	205, 536, 889
TseFI	GTSAC	1 cut(s)	777
Tsp45I	GTSAC	1 cut(s)	777
TspDTI	ATGAA	6 cut(s)	145, 582, 695, 794, 822, 1118
TspRI	CASTG	3 cut(s)	205, 536, 889
Van91I	CCANNNNNTGG	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	837
VpaK11BI	GGWCC	2 cut(s)	73, 999
XapI	RAATTY	4 cut(s)	367, 579, 931, 965
XceI	RCATGY	1 cut(s)	1017
XhoI	CTCGAG	1 cut(s)	1052
XmnI	GAANNNNTTC	2 cut(s)	686, 753
XspI	CTAG	2 cut(s)	111, 317
ZrmI	AGTACT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.