Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

16797002 .. 16798745

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTATGGCTTCTTCTGCAACTTCCAATCTATTCAAGACCTTATCGATGGCGGATTCATGCCTAGTCTCCCTCCCTTACCTTTCCGCCGCCAAAACCTCCAACCCATTTCTCTCAGTTCCCTCCAAACCCATCAAGCTCCGCCTCACCTGCACCCCTTCCTCGCGCTTCTCGCTGCCGCTGCCCCTCGGGAGAAAAACCCACTTCTCCTCCGTCGCCGCCTTTGTGGCCCAGACCTCGGACTGGGGTCAGGAAGACAGCACGCTCACCATTGACGGCGCGGAGGGAAGTGAGGAAGAAGGGGTCTTTGAGGAGAGAGAGGAGGTGTCGAATGTCGATCCTCCGGAGGAGGCCAAGGTGTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTCAGAAATTGGCTGAGCTCTTTGAAAGGGCTGGAATTGTCGAGGTTGCTGAGGTTATTTACAACAGGGACACTGATCAGAGTCGTGGGTTTGGATTTGTGACCATGAGCACTGTTGAGGAAGCTGATAAGGCTGTGGAACTGTTCAGTCGTTATGATTTAAATGGAAGGCTCTTGACTGTCAACAGGGCTGCTCCAAGAGGAACACGCCAAGAACGCCCACCCCGTTCATTTGAATCTGCTTTTAGAATCTATGTCGGTAACCTGCCATGGACTGTGGATACTCCTCAACTGGAGCAGATTTTCAGTGAACATGGTAGCGTTGTGGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

242

Amino Acids

26.51

Weight (kDa)

4.73

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	120 - 189	1.4e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	2 cut(s)	158, 663
AccII	CGCG	2 cut(s)	166, 281
AccIII	TCCGGA	1 cut(s)	343
AciI	CCGC	7 cut(s)	53, 87, 90, 142, 179, 219, 281
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	370
AfiI	CCNNNNNNNGG	2 cut(s)	238, 243
AgsI	TTSAA	3 cut(s)	37, 416, 626
AluBI	AGCT	3 cut(s)	139, 409, 515
AluI	AGCT	3 cut(s)	139, 409, 515
Alw21I	GWGCWC	2 cut(s)	411, 503
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	2 cut(s)	228, 351
ApeKI	GCWGC	3 cut(s)	175, 181, 581
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	168, 281
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	139, 259
AvaI	CYCGRG	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	2 cut(s)	411, 503
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	162, 168, 568
BccI	CCATC	2 cut(s)	43, 140
BceAI	ACGGC	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	664
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	2 cut(s)	158, 663
BfuI	GTATCC	1 cut(s)	664
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	6 cut(s)	90, 176, 179, 182, 219, 582
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	6 cut(s)	91, 177, 180, 183, 220, 583
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BoxI	GACNNNNGTC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	187, 237, 354, 659
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 243
Bse1I	ACTGG	2 cut(s)	248, 687
BseAI	TCCGGA	1 cut(s)	343
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	4 cut(s)	187, 237, 354, 659
BseLI	CCNNNNNNNGG	2 cut(s)	238, 243
BseMII	CTCAG	3 cut(s)	129, 396, 432
BseNI	ACTGG	2 cut(s)	248, 687
BseRI	GAGGAG	5 cut(s)	199, 326, 335, 362, 666
BseXI	GCAGC	3 cut(s)	162, 168, 568
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	166, 281
BshFI	GGCC	2 cut(s)	230, 353
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	411, 503
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	238, 243
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	230, 353
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	411, 503
Bsp13I	TCCGGA	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	337, 466
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	7 cut(s)	53, 87, 90, 142, 179, 219, 281
BspANI	GGCC	2 cut(s)	230, 353
BspCNI	CTCAG	3 cut(s)	128, 397, 433
BspDI	ATCGAT	1 cut(s)	47
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	2 cut(s)	166, 281
BspMI	ACCTGC	2 cut(s)	158, 663
BspPI	GGATC	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	248, 687
BssECI	CCNNGG	4 cut(s)	187, 237, 354, 659
BssMI	GATC	2 cut(s)	337, 466
BssT1I	CCWWGG	2 cut(s)	354, 659
Bst4CI	ACNGT	4 cut(s)	505, 534, 571, 667
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	115, 405, 441
BstDSI	CCRYGG	1 cut(s)	659
BstEII	GGTNACC	1 cut(s)	650
BstFNI	CGCG	2 cut(s)	166, 281
BstHHI	GCGC	2 cut(s)	168, 281
BstKTI	GATC	2 cut(s)	340, 469
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	337, 466
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 150, 172, 181, 227, 521, 606
BstPAI	GACNNNNGTC	1 cut(s)	246
BstPI	GGTNACC	1 cut(s)	650
BstUI	CGCG	2 cut(s)	166, 281
BstV1I	GCAGC	3 cut(s)	162, 168, 568
BstV2I	GAAGAC	1 cut(s)	261
Bsu15I	ATCGAT	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	2 cut(s)	230, 353
BsuTUI	ATCGAT	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	659
BtsIMutI	CAGTG	3 cut(s)	462, 501, 703
BveI	ACCTGC	2 cut(s)	158, 663
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	2 cut(s)	168, 281
Cfr13I	GGNCC	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	47
CviAII	CATG	4 cut(s)	60, 496, 660, 704
DdeI	CTNAG	3 cut(s)	115, 405, 441
DpnI	GATC	2 cut(s)	339, 468
DpnII	GATC	2 cut(s)	337, 466
DraI	TTTAAA	1 cut(s)	552
EciI	GGCGGA	3 cut(s)	68, 76, 131
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	354, 659
Eco24I	GRGCYC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	409
EcoO65I	GGTNACC	1 cut(s)	650
EcoT14I	CCWWGG	2 cut(s)	354, 659
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	2 cut(s)	354, 659
FaeI	CATG	4 cut(s)	63, 499, 663, 707
FaiI	YATR	7 cut(s)	8, 61, 497, 546, 645, 661, 705
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	4 cut(s)	59, 495, 659, 703
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	6 cut(s)	90, 176, 179, 182, 219, 582
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	6 cut(s)	90, 176, 179, 182, 219, 582
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	2 cut(s)	167, 280
GluI	GCNGC	6 cut(s)	90, 176, 179, 182, 219, 582
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	2 cut(s)	230, 353
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	2 cut(s)	168, 281
Hin1II	CATG	4 cut(s)	63, 499, 663, 707
Hin6I	GCGC	2 cut(s)	166, 279
HinP1I	GCGC	2 cut(s)	166, 279
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	4 cut(s)	56, 472, 626, 639
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	139, 259
Hpy166II	GTNNAC	2 cut(s)	574, 701
Hpy188I	TCNGA	3 cut(s)	241, 396, 471
Hpy188III	TCNNGA	5 cut(s)	37, 190, 251, 344, 565
Hpy8I	GTNNAC	2 cut(s)	574, 701
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	168, 293, 552
HpyCH4III	ACNGT	4 cut(s)	505, 534, 571, 667
HpyCH4V	TGCA	2 cut(s)	20, 153
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 150, 172, 181, 227, 521, 606
HpyF3I	CTNAG	3 cut(s)	115, 405, 441
Hsp92II	CATG	4 cut(s)	63, 499, 663, 707
HspAI	GCGC	2 cut(s)	166, 279
Kpn2I	TCCGGA	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	337, 466
LmnI	GCTCC	3 cut(s)	144, 589, 685
Lsp1109I	GCAGC	3 cut(s)	162, 168, 568
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	490, 650
MalI	GATC	2 cut(s)	339, 468
MboI	GATC	2 cut(s)	337, 466
MboII	GAAGA	3 cut(s)	6, 266, 308
MhlI	GDGCHC	2 cut(s)	411, 503
MluCI	AATT	3 cut(s)	370, 398, 426
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	126
MroI	TCCGGA	1 cut(s)	343
MseI	TTAA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	1 cut(s)	344
MvnI	CGCG	2 cut(s)	166, 281
MwoI	GCNNNNNNNGC	7 cut(s)	17, 150, 172, 181, 227, 521, 606
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	2 cut(s)	337, 466
NlaIII	CATG	4 cut(s)	63, 499, 663, 707
NmuCI	GTSAC	1 cut(s)	490
PaqCI	CACCTGC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PfeI	GAWTC	3 cut(s)	56, 626, 639
PkrI	GCNGC	6 cut(s)	91, 177, 180, 183, 220, 583
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
PshAI	GACNNNNGTC	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	411
PspEI	GGTNACC	1 cut(s)	650
PspPI	GGNCC	1 cut(s)	229
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	6 cut(s)	90, 176, 179, 182, 219, 582
Sau3AI	GATC	2 cut(s)	337, 466
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	481
SduI	GDGCHC	2 cut(s)	411, 503
SmiI	ATTTAAAT	1 cut(s)	552
Sse9I	AATT	3 cut(s)	370, 398, 426
SsiI	CCGC	7 cut(s)	53, 87, 90, 142, 179, 219, 281
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	411
StyI	CCWWGG	2 cut(s)	354, 659
SwaI	ATTTAAAT	1 cut(s)	552
TaaI	ACNGT	4 cut(s)	505, 534, 571, 667
TaqI	TCGA	4 cut(s)	47, 329, 336, 432
TasI	AATT	3 cut(s)	370, 398, 426
TauI	GCSGC	3 cut(s)	92, 181, 221
TfiI	GAWTC	3 cut(s)	56, 626, 639
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	3 cut(s)	469, 508, 703
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	3 cut(s)	175, 181, 581
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	48, 609
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	3 cut(s)	469, 508, 703
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.