Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005635

Physical Location & Seq

Genomic Coordinates Reverse (-)

20547983 .. 20548419

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGATTGGTGGTATGGTTGAGACTAGACTGGCCATGGGTTTTGCTGGCCATCTTGCTGCTGGCATGGGGTGCTTTAATGTTTGTATTCTGTACAGGTTTGTTGACCTAGACACGCCCTTGCTGCTATCAGAAGATCCGGTTCTGGAGGGTTACGAAGTTTCGGGTGCGGTTTATAAGTTCAGAAATGCTAGAGGCCATGGTGGATTTCTGCACTGGGATAATATTGCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016854 GO:0016855 GO:0034641 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0046872 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MR_MLE_C MR_MLE_N

Protein Analysis

78

Amino Acids

8.48

Weight (kDa)

5.37

Isoelectric Point (pI)

17.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18270
fragaria_vesca	FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670
malus_domestica	MD06G1220000.v1.1 MD14G1229600.v1.1
prunus_persica	Prupe.5G224400_v2.0.a1 Prupe.5G224400_v2.0.a1
pyrus_communis	pycom14g19100 pycom14g19110
rosa_chinensis	RchiOBHm_Chr7g0179451
rosa_laevigata	RLG00000005355
rosa_multiflora	Rmu_co8470985.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274010
rosa_rugosa	Rorug06G0424300 Rorug06G0424400 Rorug06G0424500 Rorug06G0424600
rosa_samantha	Rh2AG318700 Rh6AG144500 Rh7BG023500
rosa_wichuraiana	Rw4G009460 Rw4G033460 Rw5G048300 Rw7G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	2 cut(s)	30, 46
AfaI	GTAC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	3 cut(s)	30, 46, 193
ApeKI	GCWGC	2 cut(s)	56, 121
BalI	TGGCCA	2 cut(s)	32, 48
BbvI	GCAGC	2 cut(s)	43, 108
BccI	CCATC	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	3 cut(s)	24, 107, 189
BisI	GCNGC	2 cut(s)	57, 122
BlsI	GCNGC	2 cut(s)	58, 123
BmrI	ACTGGG	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	33, 196
BsaWI	WCCGGW	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	33, 218
BseDI	CCNNGG	2 cut(s)	33, 196
BseNI	ACTGG	2 cut(s)	33, 218
BseXI	GCAGC	2 cut(s)	43, 108
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	3 cut(s)	32, 48, 195
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	3 cut(s)	32, 48, 195
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	133
Bsp19I	CCATGG	2 cut(s)	33, 196
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	3 cut(s)	32, 48, 195
BspPI	GGATC	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	33, 218
BssECI	CCNNGG	2 cut(s)	33, 196
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	2 cut(s)	33, 196
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	46, 61
BstDSI	CCRYGG	2 cut(s)	33, 196
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 121
BstV1I	GCAGC	2 cut(s)	43, 108
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	32, 48, 195
BtgI	CCRYGG	2 cut(s)	33, 196
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	46, 61
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	34, 64, 197
CviJI	RGCY	3 cut(s)	32, 48, 195
CviKI_1	RGCY	3 cut(s)	32, 48, 195
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EaeI	YGGCCR	2 cut(s)	30, 46
Eco130I	CCWWGG	2 cut(s)	33, 196
EcoT14I	CCWWGG	2 cut(s)	33, 196
ErhI	CCWWGG	2 cut(s)	33, 196
FaeI	CATG	3 cut(s)	37, 67, 200
FaiI	YATR	5 cut(s)	14, 35, 65, 174, 198
FatI	CATG	3 cut(s)	33, 63, 196
Fnu4HI	GCNGC	2 cut(s)	57, 122
Fsp4HI	GCNGC	2 cut(s)	57, 122
FspBI	CTAG	3 cut(s)	24, 107, 189
GluI	GCNGC	2 cut(s)	57, 122
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	32, 48, 195
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	3 cut(s)	37, 67, 200
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	130, 182
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 121
Hsp92II	CATG	3 cut(s)	37, 67, 200
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	14, 30, 45, 79, 128, 150, 199
Lsp1109I	GCAGC	2 cut(s)	43, 108
MaeI	CTAG	3 cut(s)	24, 107, 189
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	133
MlsI	TGGCCA	2 cut(s)	32, 48
MluNI	TGGCCA	2 cut(s)	32, 48
MnlI	CCTC	2 cut(s)	139, 185
Mox20I	TGGCCA	2 cut(s)	32, 48
MscI	TGGCCA	2 cut(s)	32, 48
MseI	TTAA	1 cut(s)	75
Msp20I	TGGCCA	2 cut(s)	32, 48
MspI	CCGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	69, 121
NcoI	CCATGG	2 cut(s)	33, 196
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	37, 67, 200
PkrI	GCNGC	2 cut(s)	58, 123
PsiI	TTATAA	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	57, 122
Sau3AI	GATC	1 cut(s)	133
SetI	ASST	2 cut(s)	98, 108
SsiI	CCGC	1 cut(s)	167
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	3 cut(s)	24, 107, 189
StyI	CCWWGG	2 cut(s)	33, 196
TatI	WGTACW	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	2 cut(s)	56, 121
TspRI	CASTG	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XspI	CTAG	3 cut(s)	24, 107, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.