Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006886

Physical Location & Seq

Genomic Coordinates Forward (+)

21013642 .. 21016364

Gene Structure 2723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTCAGCTGCTTCAAAACTCATGCGTTTTGGGACCTCACTCCTCCACGCTCCCACAAGGACTCTCTCTCCTACCCCTTCACTTCTCTCTCTAAAACCCTTCGCCGCTCCCAAGTCTCTGCGCTTCCCCCGGTACGCCTCCTCTTCGGCTGCGATTGAAAGTATTGACACCGTCCCCGCCACCAGCACAGAATCTTCGCCGCCGCACCACCCCTGGCCGGAGTGGGTGGCCTTCGTCGACCGCTTGAAGACCAAGGGGTACTTCACCGGAACGCCGCCGAAGGAGAGTGATGTTTACACGGATATAAATGAAGTTAAGGAGGCATCTCTCAGCTTTGCTCGTGACCGCTATGATGTTTTCAAATCATTGTCTATGGAAGATATTCAAGCAGTTGTGGAGGGTGGATGTCCCAATCTTTTCCGGAAGGCTGTGAATTCAGCAAAAAGATTGAGATTCCATTTGAGACTAGATGAAGGGGATGTTTGTGGTGGTTGTAATCTCCGAGGTTCCTGCGATAGAGCTTATGTGGTTCTTAAGGAATCTGAAGCAGCAGCACGTACAGTGGATATAGTGCGAATACTATTGTTTTATGCTTTGGATCCCGTTGTTTTTTCTGAGGGAGAGAAACCGCCTGGTAGAGAGCTTCTAGAAACATCTGCAAGGAAGCTGCTCTCTGAGTTGCTTCAACTCAGCGAAACAGCTGTTGACCCATCACTTCCAAAGCCTGCTACCAAAACTATTGAGAAGAAGAAATTTTATCCAAGTTTCATTGGCGATGAACTATCTCAAGATGTTGAAATGAAGAGAGGAGATTGGATGTGTCCCAAGTGCAATTTTATGAACTTTGCTAAAAATTTAAGATGCCTACAATGTAAAGAAGATGGCCCAAGAAAAGCTGATGCGGGTGATCTCGAAATCGAAATGAAAAAGGGAGACTGGATCTGCACTGAATGCAGTTTCATGAACTTCTCTAGAAATATACGCTGCCTAAAGTGCAAAGCTGAAGGGCCAAAGAGAGTCGGTCCAGATGTTGAAATGAAGAAAGGAGACTGGACTTGCCCAAAGTGTGCATTCATGAATTTCGCAAGCAATAGGAAGTGTTTGCGTTGTCAAGACCCACGGCCCAAGAAAAATCCTGCAGACTGGGACTGTCCCTCATGCGATTTCTTGAATTATGGCAGAAACGCGGTTTGCCTGAAGTGCAACTGTAAACGCCCTAAAGAAGAAACTACTGAGTACGAGGAGCAGATGTGGAGGCGTCCGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

423

Amino Acids

47.7

Weight (kDa)

8.75

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	269 - 292	5.5e-08	Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP	PF00641	309 - 337	1.8e-08	Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP	PF00641	347 - 375	8.2e-10	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48570
fragaria_vesca	FvH4_5g17400 FvH4_5g17400 FvH4_5g17400 FvH4_5g17400
malus_domestica	MD06G1227200.v1.1 MD14G1236700.v1.1
prunus_persica	Prupe.5G233800_v2.0.a1 Prupe.5G233800_v2.0.a1
pyrus_communis	pycom06g20370 pycom14g19770
rosa_chinensis	RchiOBHm_Chr7g0178341
rosa_laevigata	RLG00000005454
rosa_multiflora	Rmu_co8220688.1_g000001 Rmu_sc0014842.1_g000010 Rmu_sc0028437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229690 Rroxscaffold_3G00275000
rosa_rugosa	Rorug06G0416100
rosa_samantha	Rh7AG014900 Rh7BG014400 Rh7CG014400 Rh7CG435500 Rh7DG014700
rosa_wichuraiana	Rw0G010220 Rw7G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	1187, 1264
AccIII	TCCGGA	1 cut(s)	420
AclWI	GGATC	3 cut(s)	593, 606, 947
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	4 cut(s)	433, 752, 853, 1078
AcuI	CTGAAG	3 cut(s)	564, 1023, 1217
AcyI	GRCGYC	1 cut(s)	1258
AfaI	GTAC	4 cut(s)	134, 260, 559, 1238
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	9 cut(s)	15, 158, 247, 361, 386, 686, 797, 1034, 1171
AjnI	CCWGG	2 cut(s)	212, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	8 cut(s)	8, 333, 521, 643, 667, 701, 896, 1001
AluI	AGCT	8 cut(s)	8, 333, 521, 643, 667, 701, 896, 1001
Alw26I	GTCTC	4 cut(s)	120, 457, 927, 1041
AlwI	GGATC	3 cut(s)	593, 606, 947
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	5 cut(s)	215, 228, 883, 1007, 1121
ApeKI	GCWGC	6 cut(s)	8, 149, 548, 551, 667, 984
ApoI	RAATTY	4 cut(s)	433, 752, 853, 1078
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	123, 1266
AspS9I	GGNCC	5 cut(s)	33, 884, 1007, 1022, 1122
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	256, 917
AvaII	GGWCC	2 cut(s)	33, 1022
BamHI	GGATCC	1 cut(s)	598
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	5 cut(s)	136, 560, 563, 654, 971
BccI	CCATC	2 cut(s)	718, 875
BceAI	ACGGC	1 cut(s)	1136
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	2 cut(s)	214, 633
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	4 cut(s)	120, 457, 927, 1041
BfaI	CTAG	4 cut(s)	467, 647, 972, 1267
BfmI	CTRYAG	1 cut(s)	1137
BfrI	CTTAAG	1 cut(s)	533
Bme1390I	CCNGG	3 cut(s)	130, 214, 633
Bme18I	GGWCC	2 cut(s)	33, 1022
BmgT120I	GGNCC	5 cut(s)	33, 884, 1007, 1022, 1122
BmiI	GGNNCC	3 cut(s)	34, 508, 600
BmrFI	CCNGG	3 cut(s)	130, 214, 633
BmrI	ACTGGG	1 cut(s)	1153
BmsI	GCATC	3 cut(s)	332, 851, 889
BmuI	ACTGGG	1 cut(s)	1153
BpiI	GAAGAC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	771
BpuMI	CCSGG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	1258
BsaJI	CCNNGG	5 cut(s)	128, 212, 252, 502, 1118
BsaWI	WCCGGW	2 cut(s)	266, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 1235, 1265
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	3 cut(s)	941, 1055, 1148
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	214, 633
BseDI	CCNNGG	5 cut(s)	128, 212, 252, 502, 1118
BseGI	GGATG	3 cut(s)	410, 484, 822
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	5 cut(s)	343, 606, 666, 703, 1224
BseNI	ACTGG	3 cut(s)	941, 1055, 1148
BseRI	GAGGAG	4 cut(s)	32, 130, 822, 1256
BseXI	GCAGC	5 cut(s)	136, 560, 563, 654, 971
BsgI	GTGCAG	1 cut(s)	928
Bsh1236I	CGCG	2 cut(s)	1187, 1264
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	5 cut(s)	217, 230, 885, 1009, 1123
BsiEI	CGRYCG	1 cut(s)	241
BsiSI	CCGG	4 cut(s)	130, 218, 267, 421
BslFI	GGGAC	6 cut(s)	46, 158, 393, 807, 1137, 1160
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	4 cut(s)	120, 457, 927, 1041
BsmFI	GGGAC	6 cut(s)	46, 158, 393, 807, 1137, 1160
BsmI	GAATGC	2 cut(s)	956, 1070
BsnI	GGCC	5 cut(s)	217, 230, 885, 1009, 1123
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	598, 907, 939
BspANI	GGCC	5 cut(s)	217, 230, 885, 1009, 1123
BspCNI	CTCAG	5 cut(s)	342, 607, 667, 702, 1225
BspEI	TCCGGA	1 cut(s)	420
BspFNI	CGCG	2 cut(s)	1187, 1264
BspHI	TCATGA	2 cut(s)	960, 1074
BspLI	GGNNCC	3 cut(s)	34, 508, 600
BspMAI	CTGCAG	1 cut(s)	1141
BspPI	GGATC	3 cut(s)	593, 606, 947
BspTI	CTTAAG	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	107
BsrI	ACTGG	3 cut(s)	941, 1055, 1148
BssECI	CCNNGG	5 cut(s)	128, 212, 252, 502, 1118
BssMI	GATC	3 cut(s)	598, 907, 939
BssNI	GRCGYC	1 cut(s)	1258
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	214, 633
Bst4CI	ACNGT	4 cut(s)	172, 562, 1151, 1208
Bst6I	CTCTTC	2 cut(s)	148, 797
BstACI	GRCGYC	1 cut(s)	1258
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	951
BstBAI	YACGTR	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	726, 1087
BstDEI	CTNAG	5 cut(s)	329, 615, 675, 689, 1233
BstDSI	CCRYGG	1 cut(s)	1118
BstF5I	GGATG	3 cut(s)	410, 484, 822
BstFNI	CGCG	2 cut(s)	1187, 1264
BstHHI	GCGC	2 cut(s)	123, 1266
BstKTI	GATC	3 cut(s)	601, 910, 942
BstMAI	GTCTC	4 cut(s)	120, 457, 927, 1041
BstMBI	GATC	3 cut(s)	598, 907, 939
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	951, 993, 1200
BstNI	CCWGG	2 cut(s)	214, 633
BstSCI	CCNGG	3 cut(s)	128, 212, 631
BstSFI	CTRYAG	1 cut(s)	1137
BstUI	CGCG	2 cut(s)	1187, 1264
BstV1I	GCAGC	5 cut(s)	136, 560, 563, 654, 971
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	598, 939
BstYI	RGATCY	2 cut(s)	598, 939
BsuRI	GGCC	5 cut(s)	217, 230, 885, 1009, 1123
BtgI	CCRYGG	1 cut(s)	1118
BtgZI	GCGATG	1 cut(s)	789
BtsCI	GGATG	3 cut(s)	410, 484, 822
BtsIMutI	CAGTG	2 cut(s)	567, 945
Cac8I	GCNNGC	2 cut(s)	726, 1087
CciI	TCATGA	2 cut(s)	960, 1074
CfoI	GCGC	2 cut(s)	123, 1266
Cfr13I	GGNCC	5 cut(s)	33, 884, 1007, 1022, 1122
CseI	GACGC	1 cut(s)	1247
Csp6I	GTAC	4 cut(s)	133, 259, 558, 1237
CviAII	CATG	4 cut(s)	22, 961, 1075, 1158
CviQI	GTAC	4 cut(s)	133, 259, 558, 1237
DdeI	CTNAG	5 cut(s)	329, 615, 675, 689, 1233
DpnI	GATC	3 cut(s)	600, 909, 941
DpnII	GATC	3 cut(s)	598, 907, 939
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	148, 797
EarI	CTCTTC	2 cut(s)	148, 797
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	33, 1022
Eco57I	CTGAAG	3 cut(s)	564, 1023, 1217
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	212, 631
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	4 cut(s)	25, 964, 1078, 1161
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	6 cut(s)	46, 158, 393, 807, 1137, 1160
FatI	CATG	4 cut(s)	21, 960, 1074, 1157
FauI	CCCGC	2 cut(s)	184, 895
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	3 cut(s)	417, 491, 829
FspBI	CTAG	4 cut(s)	467, 647, 972, 1267
GlaI	GCGC	2 cut(s)	122, 1265
HaeIII	GGCC	5 cut(s)	217, 230, 885, 1009, 1123
HapII	CCGG	4 cut(s)	130, 218, 267, 421
HgaI	GACGC	1 cut(s)	1247
HhaI	GCGC	2 cut(s)	123, 1266
Hin1I	GRCGYC	1 cut(s)	1258
Hin1II	CATG	4 cut(s)	25, 964, 1078, 1161
Hin6I	GCGC	2 cut(s)	121, 1264
HinP1I	GCGC	2 cut(s)	121, 1264
HincII	GTYRAC	2 cut(s)	238, 706
HindII	GTYRAC	2 cut(s)	238, 706
HinfI	GANTC	5 cut(s)	61, 191, 453, 539, 1017
HpaII	CCGG	4 cut(s)	130, 218, 267, 421
HphI	GGTGA	2 cut(s)	256, 917
Hpy166II	GTNNAC	4 cut(s)	238, 295, 706, 1211
Hpy188I	TCNGA	4 cut(s)	503, 544, 616, 676
Hpy8I	GTNNAC	4 cut(s)	238, 295, 706, 1211
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	7 cut(s)	87, 109, 241, 274, 418, 467, 998
HpyCH4III	ACNGT	4 cut(s)	172, 562, 1151, 1208
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	8 cut(s)	659, 831, 945, 954, 996, 1070, 1139, 1203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	951, 993, 1200
HpyF3I	CTNAG	5 cut(s)	329, 615, 675, 689, 1233
HpySE526I	ACGT	1 cut(s)	556
Hsp92I	GRCGYC	1 cut(s)	1258
Hsp92II	CATG	4 cut(s)	25, 964, 1078, 1161
HspAI	GCGC	2 cut(s)	121, 1264
Kpn2I	TCCGGA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	598, 907, 939
LmnI	GCTCC	3 cut(s)	55, 112, 1243
Lsp1109I	GCAGC	5 cut(s)	136, 560, 563, 654, 971
LweI	GCATC	3 cut(s)	332, 851, 889
MaeI	CTAG	4 cut(s)	467, 647, 972, 1267
MaeII	ACGT	1 cut(s)	556
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	3 cut(s)	600, 909, 941
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	3 cut(s)	598, 907, 939
MflI	RGATCY	2 cut(s)	598, 939
MluCI	AATT	6 cut(s)	433, 752, 832, 853, 1078, 1171
MlyI	GAGTC	2 cut(s)	55, 1026
MroI	TCCGGA	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	3 cut(s)	315, 534, 857
MspA1I	CMGCKG	2 cut(s)	8, 701
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	4 cut(s)	130, 218, 267, 421
MspR9I	CCNGG	3 cut(s)	130, 214, 633
Mva1269I	GAATGC	2 cut(s)	956, 1070
MvaI	CCWGG	2 cut(s)	214, 633
MvnI	CGCG	2 cut(s)	1187, 1264
MwoI	GCNNNNNNNGC	3 cut(s)	951, 993, 1200
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	3 cut(s)	598, 907, 939
NlaIII	CATG	4 cut(s)	25, 964, 1078, 1161
NlaIV	GGNNCC	3 cut(s)	34, 508, 600
NmuCI	GTSAC	1 cut(s)	341
PagI	TCATGA	2 cut(s)	960, 1074
PctI	GAATGC	2 cut(s)	956, 1070
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	191, 453, 539
PflFI	GACNNNGTC	1 cut(s)	170
PleI	GAGTC	2 cut(s)	55, 1025
PpsI	GAGTC	2 cut(s)	55, 1025
Ppu21I	YACGTR	1 cut(s)	557
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	212, 631
PspGI	CCWGG	2 cut(s)	212, 631
PspN4I	GGNNCC	3 cut(s)	34, 508, 600
PspPI	GGNCC	5 cut(s)	33, 884, 1007, 1022, 1122
PspPPI	RGGWCCY	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	1141
PsuI	RGATCY	2 cut(s)	598, 939
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	2 cut(s)	8, 701
RsaI	GTAC	4 cut(s)	134, 260, 559, 1238
RsaNI	GTAC	4 cut(s)	133, 259, 558, 1237
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	315, 534, 857
Sau3AI	GATC	3 cut(s)	598, 907, 939
Sau96I	GGNCC	5 cut(s)	33, 884, 1007, 1022, 1122
SchI	GAGTC	2 cut(s)	55, 1026
ScrFI	CCNGG	3 cut(s)	130, 214, 633
SfaNI	GCATC	3 cut(s)	332, 851, 889
SfcI	CTRYAG	1 cut(s)	1137
SinI	GGWCC	2 cut(s)	33, 1022
SmlI	CTYRAG	2 cut(s)	533, 786
SmoI	CTYRAG	2 cut(s)	533, 786
Sse9I	AATT	6 cut(s)	433, 752, 832, 853, 1078, 1171
SspMI	CTAG	4 cut(s)	467, 647, 972, 1267
StyD4I	CCNGG	3 cut(s)	128, 212, 631
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	4 cut(s)	172, 562, 1151, 1208
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	3 cut(s)	237, 912, 918
TaqII	GACCGA	1 cut(s)	1010
TasI	AATT	6 cut(s)	433, 752, 832, 853, 1078, 1171
TauI	GCSGC	4 cut(s)	107, 202, 205, 277
TfiI	GAWTC	3 cut(s)	191, 453, 539
Tru1I	TTAA	3 cut(s)	315, 534, 857
Tru9I	TTAA	3 cut(s)	315, 534, 857
TscAI	CASTG	2 cut(s)	567, 952
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	6 cut(s)	8, 149, 548, 551, 667, 984
Tsp45I	GTSAC	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	567, 952
Tth111I	GACNNNGTC	1 cut(s)	170
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	33, 1022
XapI	RAATTY	4 cut(s)	433, 752, 853, 1078
XbaI	TCTAGA	2 cut(s)	646, 971
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	4 cut(s)	467, 647, 972, 1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.