Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Reverse (-)

572431 .. 573952

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGCACCAAAGAACGCCCGGACTCCGCCTCTCAGCGCCAGAATTGGCAGAACATATTCAACGCTGTGGTGCAGTTGCTGCGGTCCCAGCAATCGAAGCTCGAGACAATGACCGCCGACAGAAAAGTCTTCGAAGATCGCGTCAGAGTGCAAGAAGAGAAGTGGGTCTCCGCATTTCATCTCTTGGGAGATCAAATCCGCCAGATGAAGGTGGATTTGGAATTGAAAGAGATGGAAGGCTCCGTTGAGGCGGCCAAGTTAGGGTGGGCGCTTAGTATGAAGCAACAAGAGGCTTACACCACCAAACTCAAGTTAGAATACTCGGACAGTGAGTTAGAAGGTTTCAAAGCATGGTTTGACCTGCACTCCAACAATTACACCACCTTAAAGCAGCAATGTGATAAGCTTGGTTCCGAAAAGAGCTTCGCGTGGCATCAGTACGGCCTTATGGAAAACGATTTCAAAATTAAACTGAAGAGCAAGAATTCTGAACTCGAGCAGGCGAATGCAAAAATACAAACTCTTCTTGCTAGTATGGAGCAGTTACAGTCCTCAAATAATGAAAAGGATGACAAGATTGGAATATTAATAAGTAAAGTTGCTAAGATGGAGACTGATTCAAACAAGTTGAAGGAAGAAATTTCGAAACTTTCAAAGGATTTGGATTTGTTAAGAAATGCAGCAAGTACTTCGTCTACTCCTGTTTTGAACCGTTGCACAACAAGAGCTAGAGGCAAGAGTAGTGCTAAGGATAAAATTAATGTAACTGTGAAGAAAGATTTTTCGGCTGCTCAACTTACTCAATCTACAAAGGAGACCAAAAAGGGGAACGGCAGTTCGAAGAGAAAAGCAGATGATGGTGTAACCATTTCTGAGACTCCGAAGTTGTTCTCATCTAGATTTAAAGTACCCAAACTGAAGAACGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

35.12

Weight (kDa)

9.43

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	695
AccII	CGCG	2 cut(s)	141, 428
AciI	CCGC	6 cut(s)	27, 82, 114, 171, 199, 251
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	484, 639
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	440, 688, 909
AfiI	CCNNNNNNNGG	3 cut(s)	208, 261, 825
AgsI	TTSAA	8 cut(s)	61, 226, 346, 463, 621, 631, 654, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AloI	GAACNNNNNNTCC	2 cut(s)	820, 852
AluBI	AGCT	4 cut(s)	100, 406, 423, 728
AluI	AGCT	4 cut(s)	100, 406, 423, 728
Alw26I	GTCTC	5 cut(s)	98, 172, 605, 809, 869
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	2 cut(s)	101, 494
AoxI	GGCC	2 cut(s)	252, 442
ApeKI	GCWGC	4 cut(s)	79, 391, 680, 788
ApoI	RAATTY	2 cut(s)	484, 639
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AseI	ATTAAT	2 cut(s)	587, 759
Asp700I	GAANNNNTTC	2 cut(s)	56, 887
AspLEI	GCGC	2 cut(s)	39, 271
AspS9I	GGNCC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	20
AsuII	TTCGAA	3 cut(s)	132, 644, 839
AvaI	CYCGRG	2 cut(s)	101, 494
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	4 cut(s)	66, 403, 692, 775
BccI	CCATC	3 cut(s)	226, 601, 851
BceAI	ACGGC	2 cut(s)	457, 847
BcgI	CGANNNNNNTGC	2 cut(s)	672, 706
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	5 cut(s)	98, 172, 605, 809, 869
BfaI	CTAG	3 cut(s)	531, 729, 897
BfoI	RGCGCY	2 cut(s)	40, 272
BfuAI	ACCTGC	1 cut(s)	369
BisI	GCNGC	5 cut(s)	80, 252, 392, 681, 789
BlsI	GCNGC	5 cut(s)	81, 253, 393, 682, 790
BmcAI	AGTACT	1 cut(s)	688
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	2 cut(s)	101, 494
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	4 cut(s)	7, 86, 241, 412
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu14I	TTCGAA	3 cut(s)	132, 644, 839
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	20
BsaI	GGTCTC	2 cut(s)	172, 809
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 261, 825
Bse3DI	GCAATG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	3 cut(s)	208, 261, 825
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	2 cut(s)	47, 864
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	66, 403, 692, 775
BseYI	CCCAGC	1 cut(s)	87
BsgI	GTGCAG	2 cut(s)	92, 347
Bsh1236I	CGCG	2 cut(s)	141, 428
BshFI	GGCC	2 cut(s)	254, 444
BshNI	GGYRCC	1 cut(s)	5
BsiHKCI	CYCGRG	2 cut(s)	101, 494
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	3 cut(s)	208, 261, 825
BsmAI	GTCTC	5 cut(s)	98, 172, 605, 809, 869
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	254, 444
Bso31I	GGTCTC	2 cut(s)	172, 809
BsoBI	CYCGRG	2 cut(s)	101, 494
Bsp119I	TTCGAA	3 cut(s)	132, 644, 839
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	136, 190, 926
BspACI	CCGC	6 cut(s)	27, 82, 114, 171, 199, 251
BspANI	GGCC	2 cut(s)	254, 444
BspCNI	CTCAG	2 cut(s)	46, 865
BspFNI	CGCG	2 cut(s)	141, 428
BspHI	TCATGA	1 cut(s)	929
BspLI	GGNNCC	4 cut(s)	7, 86, 241, 412
BspMI	ACCTGC	1 cut(s)	369
BspQI	GCTCTTC	1 cut(s)	470
BspT104I	TTCGAA	3 cut(s)	132, 644, 839
BspT107I	GGYRCC	1 cut(s)	5
BspTNI	GGTCTC	2 cut(s)	172, 809
BsrDI	GCAATG	1 cut(s)	401
BssMI	GATC	3 cut(s)	136, 190, 926
Bst4CI	ACNGT	4 cut(s)	329, 549, 713, 769
Bst6I	CTCTTC	4 cut(s)	150, 470, 528, 836
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstBI	TTCGAA	3 cut(s)	132, 644, 839
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	5 cut(s)	33, 272, 603, 747, 873
BstF5I	GGATG	1 cut(s)	574
BstFNI	CGCG	2 cut(s)	141, 428
BstH2I	RGCGCY	2 cut(s)	40, 272
BstHHI	GCGC	2 cut(s)	39, 271
BstKTI	GATC	3 cut(s)	139, 193, 929
BstMAI	GTCTC	5 cut(s)	98, 172, 605, 809, 869
BstMBI	GATC	3 cut(s)	136, 190, 926
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 88, 97
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	2 cut(s)	141, 428
BstV1I	GCAGC	4 cut(s)	66, 403, 692, 775
BstV2I	GAAGAC	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	254, 444
BtsCI	GGATG	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	501
CaiI	CAGNNNCTG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	929
CfoI	GCGC	2 cut(s)	39, 271
Cfr13I	GGNCC	1 cut(s)	84
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	439, 687, 908
CviAII	CATG	2 cut(s)	351, 930
CviJI	RGCY	9 cut(s)	100, 240, 254, 293, 406, 423, 444, 728, 788
CviKI_1	RGCY	9 cut(s)	100, 240, 254, 293, 406, 423, 444, 728, 788
CviQI	GTAC	3 cut(s)	439, 687, 908
DdeI	CTNAG	5 cut(s)	33, 272, 603, 747, 873
DpnI	GATC	3 cut(s)	138, 192, 928
DpnII	GATC	3 cut(s)	136, 190, 926
DraI	TTTAAA	1 cut(s)	904
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	4 cut(s)	150, 470, 528, 836
EarI	CTCTTC	4 cut(s)	150, 470, 528, 836
EciI	GGCGGA	2 cut(s)	16, 188
Eco31I	GGTCTC	2 cut(s)	172, 809
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	2 cut(s)	101, 494
EcoRI	GAATTC	1 cut(s)	484
FaeI	CATG	2 cut(s)	354, 933
FaiI	YATR	6 cut(s)	56, 278, 352, 449, 536, 931
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	2 cut(s)	350, 929
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	5 cut(s)	80, 252, 392, 681, 789
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	5 cut(s)	80, 252, 392, 681, 789
FspBI	CTAG	3 cut(s)	531, 729, 897
GlaI	GCGC	2 cut(s)	38, 270
GluI	GCNGC	5 cut(s)	80, 252, 392, 681, 789
GsaI	CCCAGC	1 cut(s)	91
HaeII	RGCGCY	2 cut(s)	40, 272
HaeIII	GGCC	2 cut(s)	254, 444
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	2 cut(s)	39, 271
Hin1II	CATG	2 cut(s)	354, 933
Hin6I	GCGC	2 cut(s)	37, 269
HinP1I	GCGC	2 cut(s)	37, 269
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	3 cut(s)	23, 617, 877
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	6 cut(s)	146, 325, 415, 490, 874, 882
Hpy188III	TCNNGA	3 cut(s)	103, 897, 930
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	4 cut(s)	202, 230, 332, 625
HpyCH4III	ACNGT	4 cut(s)	329, 549, 713, 769
HpyCH4V	TGCA	6 cut(s)	73, 151, 364, 509, 680, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 88, 97
HpyF3I	CTNAG	5 cut(s)	33, 272, 603, 747, 873
Hsp92II	CATG	2 cut(s)	354, 933
HspAI	GCGC	2 cut(s)	37, 269
Kzo9I	GATC	3 cut(s)	136, 190, 926
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	2 cut(s)	245, 538
LpnPI	CCDG	7 cut(s)	33, 53, 101, 215, 374, 485, 714
Lsp1109I	GCAGC	4 cut(s)	66, 403, 692, 775
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	531, 729, 897
MaeIII	GTNAC	3 cut(s)	543, 763, 862
MalI	GATC	3 cut(s)	138, 192, 928
MboI	GATC	3 cut(s)	136, 190, 926
MboII	GAAGA	9 cut(s)	121, 146, 167, 487, 515, 647, 784, 853, 931
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	7 cut(s)	43, 221, 373, 465, 484, 639, 756
MlyI	GAGTC	2 cut(s)	17, 871
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	5 cut(s)	40, 241, 283, 562, 725
MroXI	GAANNNNTTC	2 cut(s)	56, 887
MseI	TTAA	6 cut(s)	386, 468, 587, 671, 759, 903
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	511
MvnI	CGCG	2 cut(s)	141, 428
MwoI	GCNNNNNNNGC	3 cut(s)	79, 88, 97
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	3 cut(s)	136, 190, 926
NlaIII	CATG	2 cut(s)	354, 933
NlaIV	GGNNCC	4 cut(s)	7, 86, 241, 412
NspV	TTCGAA	3 cut(s)	132, 644, 839
PaeR7I	CTCGAG	2 cut(s)	101, 494
PagI	TCATGA	1 cut(s)	929
PciSI	GCTCTTC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	2 cut(s)	56, 887
PfeI	GAWTC	1 cut(s)	617
PkrI	GCNGC	5 cut(s)	81, 253, 393, 682, 790
PleI	GAGTC	2 cut(s)	17, 871
PpsI	GAGTC	2 cut(s)	17, 871
PshBI	ATTAAT	2 cut(s)	587, 759
PspFI	CCCAGC	1 cut(s)	87
PspN4I	GGNNCC	4 cut(s)	7, 86, 241, 412
PspPI	GGNCC	1 cut(s)	84
PspXI	VCTCGAGB	1 cut(s)	494
PstNI	CAGNNNCTG	1 cut(s)	79
RsaI	GTAC	3 cut(s)	440, 688, 909
RsaNI	GTAC	3 cut(s)	439, 687, 908
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	6 cut(s)	386, 468, 587, 671, 759, 903
SatI	GCNGC	5 cut(s)	80, 252, 392, 681, 789
Sau3AI	GATC	3 cut(s)	136, 190, 926
Sau96I	GGNCC	1 cut(s)	84
ScaI	AGTACT	1 cut(s)	688
SchI	GAGTC	2 cut(s)	17, 871
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	102, 213, 343, 363, 386, 408, 425, 730
SfaNI	GCATC	1 cut(s)	442
Sfr274I	CTCGAG	2 cut(s)	101, 494
SfuI	TTCGAA	3 cut(s)	132, 644, 839
SinI	GGWCC	1 cut(s)	84
SlaI	CTCGAG	2 cut(s)	101, 494
SmlI	CTYRAG	3 cut(s)	101, 308, 494
SmoI	CTYRAG	3 cut(s)	101, 308, 494
Sse9I	AATT	7 cut(s)	43, 221, 373, 465, 484, 639, 756
SsiI	CCGC	6 cut(s)	27, 82, 114, 171, 199, 251
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	3 cut(s)	531, 729, 897
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	4 cut(s)	329, 549, 713, 769
TaqI	TCGA	6 cut(s)	95, 102, 132, 495, 644, 839
TasI	AATT	7 cut(s)	43, 221, 373, 465, 484, 639, 756
TatI	WGTACW	1 cut(s)	686
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	6 cut(s)	386, 468, 587, 671, 759, 903
Tru9I	TTAA	6 cut(s)	386, 468, 587, 671, 759, 903
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	4 cut(s)	79, 391, 680, 788
TspDTI	ATGAA	4 cut(s)	167, 221, 293, 576
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	84
VspI	ATTAAT	2 cut(s)	587, 759
XapI	RAATTY	2 cut(s)	484, 639
XbaI	TCTAGA	1 cut(s)	896
XhoI	CTCGAG	2 cut(s)	101, 494
XmiI	GTMKAC	1 cut(s)	695
XmnI	GAANNNNTTC	2 cut(s)	56, 887
XspI	CTAG	3 cut(s)	531, 729, 897
ZrmI	AGTACT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.