Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008298

Physical Location & Seq

Genomic Coordinates Forward (+)

1296969 .. 1298551

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCAATTCGGAAACGTGTTTCACGAGCTATTCGAGATGAGAGGTGACAAGGGGAAGAAATCAAGAAGAGGAGGGGAAGAGAGGAAGCACACGCGCCGCCGTGCGAAATCTCACATTGCCCCGGAACATACATTGTCATCACCCGCATCAGTTGAGCAAACCAAGTGGGCAAACTTGCCCCCGGAGTTGCTTCTCGACATAATCCAACGCGTTGAAGCGAGTGAGACTTCCTGGCCTGCTCGGAGGGATGTGATTGCTTGCGCTTCGGTTTGCAAGTCGTGGAGGGAGATTACGAAAGGGATAGTCAAGACTCCAGAGCAATGTGGCTGGCTTACCTTCCCTGTCTCACTCAAGCAGCCGGGACCAAGAGATGATCCGATCCAGTGCTTTATTAAGAGGGAAAGAGAAACTTCAACATACCTACTGTATCTTGGTCTTAGCCCTGCTCTGTGTGGGGACGTGAGTAAGTTATTGCTGGCAGCAAGGAAGGTCAGACGGGCAACAAGTACACATTTTGTTGTGTCCTTGGTTGCAGATGAATTCTCTCGAGCAAGCATTACTTATGTTGGAAAATTGAGGTCTAATTTTCTGGGATCCAAGTTTACCGTTTATGACAGTCAGCCTCCACAAGACTCAGCAATCCAAACAAATTATCAGTCGCATCGAAAAATCAATCCAAAGAAGGTATCTCCAAGGATGACTGCTGGTAGCTATAGTGTTGCTACTGTATCGTACGAGCTCAATATCCTCCGAACAAGGGGACCAAGGAGAATGCAATGCATCATGCAATCAATACCCATGTCAGCAGTTCAGGAAGGGGGCGTTGCTCCTACTCCAACAGAGTTAGCGACCTGCCTTCCTCCAAATTGCTGTGCATTGCAAGTTTCAAAGGGATCGAAGCAGCTTGCCAACTTTTGCTCTAGTGACCCCACAACGGATTTGGAACAAGGCACAAAAGATCCGGTCATTTTGAAAAACAAAGCTCCTAGATGGCACGAGCAGCTGCAGTGTTGGTGTCTGAATTTTAAGGGACGCGTTACAGTGGCTTCTGTGAAGAATTTCCAGCTGGTGGCCGCTGCAGAGCCTTGCCATAATGTTCCATTGGCTGAAGAAGAGAAAGTAATACTGCAATTCGGGAAGATTGGTAAAGACATTTTCACAATGGACTATCGCTACCCTCTCTCTGCTTTCCAAGCCTTCGCAATTTGCTTGAGCAGCTTTGACACGAAACCAGTCTGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Tub

Protein Analysis

415

Amino Acids

46.3

Weight (kDa)

9.33

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	56 - 98	3.8e-07	F-box-like
Tub	PF01167	117 - 409	2.2e-100	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47270 AT1G47270 AT1G47270
fragaria_vesca	FvH4_2g39640 FvH4_2g39640
malus_domestica	MD08G1029900.v1.1 MD08G1030000.v1.1 MD15G1025400.v1.1
prunus_persica	Prupe.1G377700_v2.0.a1 Prupe.1G377700_v2.0.a1
pyrus_communis	pycom08g02380 pycom15g02180
rosa_chinensis	RchiOBHm_Chr6g0301261
rosa_laevigata	RLG00000011266
rosa_multiflora	Rmu_sc0013354.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441300 Rroxscaffold_7G00167020
rosa_rugosa	Rorug06G0302800
rosa_samantha	Rh6AG416300 Rh6BG423000 Rh6CG430600 Rh6DG416000
rosa_wichuraiana	Rw6G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	860
AccB7I	CCANNNNNTGG	1 cut(s)	1069
AccII	CGCG	3 cut(s)	94, 210, 1035
AciI	CCGC	3 cut(s)	97, 144, 1074
AclWI	GGATC	6 cut(s)	368, 373, 588, 601, 901, 953
AcoI	YGGCCR	1 cut(s)	1071
AcsI	RAATTY	3 cut(s)	539, 1021, 1057
AcuI	CTGAAG	1 cut(s)	1128
AfaI	GTAC	2 cut(s)	508, 734
AfiI	CCNNNNNNNGG	3 cut(s)	757, 934, 1069
AflIII	ACRYGT	3 cut(s)	15, 208, 1033
AgsI	TTSAA	4 cut(s)	215, 414, 888, 973
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	8 cut(s)	28, 711, 739, 904, 983, 1003, 1066, 1218
AluI	AGCT	8 cut(s)	28, 711, 739, 904, 983, 1003, 1066, 1218
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	2 cut(s)	218, 349
AlwI	GGATC	6 cut(s)	368, 373, 588, 601, 901, 953
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	2 cut(s)	233, 1071
ApeKI	GCWGC	7 cut(s)	355, 479, 901, 1000, 1003, 1076, 1215
ApoI	RAATTY	3 cut(s)	539, 1021, 1057
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
Asp700I	GAANNNNTTC	1 cut(s)	1058
AspLEI	GCGC	2 cut(s)	96, 263
AspS9I	GGNCC	2 cut(s)	362, 761
AsuC2I	CCSGG	3 cut(s)	122, 182, 360
AsuHPI	GGTGA	2 cut(s)	56, 132
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	2 cut(s)	362, 761
BamHI	GGATCC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	741
BauI	CACGAG	2 cut(s)	23, 995
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	7 cut(s)	367, 491, 913, 990, 1012, 1063, 1227
BccI	CCATC	1 cut(s)	984
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	3 cut(s)	122, 182, 360
BcoDI	GTCTC	2 cut(s)	218, 349
BfaI	CTAG	2 cut(s)	921, 987
BfmI	CTRYAG	3 cut(s)	712, 1004, 1077
BfuAI	ACCTGC	1 cut(s)	860
BisI	GCNGC	9 cut(s)	97, 356, 480, 902, 1001, 1004, 1074, 1077, 1216
BlsI	GCNGC	9 cut(s)	98, 357, 481, 903, 1002, 1005, 1075, 1078, 1217
Bme1390I	CCNGG	4 cut(s)	122, 182, 232, 360
Bme18I	GGWCC	2 cut(s)	362, 761
BmeT110I	CYCGRG	1 cut(s)	546
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	362, 761
BmiI	GGNNCC	3 cut(s)	363, 595, 762
BmrFI	CCNGG	4 cut(s)	122, 182, 232, 360
BmsI	GCATC	3 cut(s)	155, 670, 789
BpmI	CTGGAG	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	335, 1231
BpuMI	CCSGG	3 cut(s)	122, 182, 360
BsaJI	CCNNGG	5 cut(s)	120, 180, 525, 692, 764
BsaWI	WCCGGW	1 cut(s)	961
Bsc4I	CCNNNNNNNGG	3 cut(s)	757, 934, 1069
Bse1I	ACTGG	2 cut(s)	382, 1232
Bse3DI	GCAATG	4 cut(s)	114, 326, 782, 875
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	5 cut(s)	120, 180, 525, 692, 764
BseGI	GGATG	2 cut(s)	253, 702
BseLI	CCNNNNNNNGG	3 cut(s)	757, 934, 1069
BseMI	GCAATG	4 cut(s)	114, 326, 782, 875
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	2 cut(s)	382, 1232
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	7 cut(s)	367, 491, 913, 990, 1012, 1063, 1227
Bsh1236I	CGCG	3 cut(s)	94, 210, 1035
BshFI	GGCC	2 cut(s)	235, 1073
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	4 cut(s)	122, 182, 359, 962
BsiWI	CGTACG	1 cut(s)	732
BslFI	GGGAC	4 cut(s)	375, 470, 774, 1044
BslI	CCNNNNNNNGG	3 cut(s)	757, 934, 1069
BsmAI	GTCTC	2 cut(s)	218, 349
BsmFI	GGGAC	4 cut(s)	375, 470, 774, 1044
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	235, 1073
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	5 cut(s)	373, 378, 593, 893, 958
BspACI	CCGC	3 cut(s)	97, 144, 1074
BspANI	GGCC	2 cut(s)	235, 1073
BspCNI	CTCAG	1 cut(s)	647
BspFNI	CGCG	3 cut(s)	94, 210, 1035
BspLI	GGNNCC	3 cut(s)	363, 595, 762
BspMAI	CTGCAG	2 cut(s)	1008, 1081
BspMI	ACCTGC	1 cut(s)	860
BspPI	GGATC	6 cut(s)	368, 373, 588, 601, 901, 953
BsrDI	GCAATG	4 cut(s)	114, 326, 782, 875
BsrI	ACTGG	2 cut(s)	382, 1232
BssECI	CCNNGG	5 cut(s)	120, 180, 525, 692, 764
BssMI	GATC	5 cut(s)	373, 378, 593, 893, 958
BssSI	CACGAG	2 cut(s)	23, 995
BssT1I	CCWWGG	3 cut(s)	525, 692, 764
Bst2BI	CACGAG	2 cut(s)	23, 995
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	5 cut(s)	426, 607, 617, 727, 1042
Bst6I	CTCTTC	3 cut(s)	61, 72, 1107
BstC8I	GCNNGC	6 cut(s)	237, 259, 329, 477, 553, 906
BstDEI	CTNAG	2 cut(s)	437, 634
BstF5I	GGATG	2 cut(s)	253, 702
BstFNI	CGCG	3 cut(s)	94, 210, 1035
BstHHI	GCGC	2 cut(s)	96, 263
BstKTI	GATC	5 cut(s)	376, 381, 596, 896, 961
BstMAI	GTCTC	2 cut(s)	218, 349
BstMBI	GATC	5 cut(s)	373, 378, 593, 893, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	1000, 1193, 1215
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	4 cut(s)	120, 180, 230, 358
BstSFI	CTRYAG	3 cut(s)	712, 1004, 1077
BstUI	CGCG	3 cut(s)	94, 210, 1035
BstV1I	GCAGC	7 cut(s)	367, 491, 913, 990, 1012, 1063, 1227
BstX2I	RGATCY	2 cut(s)	593, 958
BstYI	RGATCY	2 cut(s)	593, 958
BsuRI	GGCC	2 cut(s)	235, 1073
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	253, 702
BtsI	GCAGTG	1 cut(s)	1013
BtsIMutI	CAGTG	3 cut(s)	389, 1013, 1047
BveI	ACCTGC	1 cut(s)	860
Cac8I	GCNNGC	6 cut(s)	237, 259, 329, 477, 553, 906
CfoI	GCGC	2 cut(s)	96, 263
Cfr13I	GGNCC	2 cut(s)	362, 761
CseI	GACGC	1 cut(s)	1041
Csp6I	GTAC	2 cut(s)	507, 733
CspCI	CAANNNNNGTGG	2 cut(s)	146, 181
CviAII	CATG	2 cut(s)	784, 799
CviQI	GTAC	2 cut(s)	507, 733
DdeI	CTNAG	2 cut(s)	437, 634
DpnI	GATC	5 cut(s)	375, 380, 595, 895, 960
DpnII	GATC	5 cut(s)	373, 378, 593, 893, 958
EaeI	YGGCCR	1 cut(s)	1071
Eam1104I	CTCTTC	3 cut(s)	61, 72, 1107
EarI	CTCTTC	3 cut(s)	61, 72, 1107
Ecl136II	GAGCTC	1 cut(s)	739
Eco130I	CCWWGG	3 cut(s)	525, 692, 764
Eco24I	GRGCYC	1 cut(s)	741
Eco47I	GGWCC	2 cut(s)	362, 761
Eco53kI	GAGCTC	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	1128
Eco88I	CYCGRG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	739
EcoRI	GAATTC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	3 cut(s)	525, 692, 764
EcoT22I	ATGCAT	1 cut(s)	782
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	3 cut(s)	525, 692, 764
FaeI	CATG	2 cut(s)	787, 802
FaiI	YATR	9 cut(s)	129, 200, 418, 564, 612, 714, 785, 800, 1092
FalI	AAGNNNNNCTT	4 cut(s)	394, 426, 544, 576
FaqI	GGGAC	4 cut(s)	375, 470, 774, 1044
FatI	CATG	2 cut(s)	783, 798
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	9 cut(s)	97, 356, 480, 902, 1001, 1004, 1074, 1077, 1216
FokI	GGATG	2 cut(s)	260, 709
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	9 cut(s)	97, 356, 480, 902, 1001, 1004, 1074, 1077, 1216
FspBI	CTAG	2 cut(s)	921, 987
GlaI	GCGC	2 cut(s)	95, 262
GluI	GCNGC	9 cut(s)	97, 356, 480, 902, 1001, 1004, 1074, 1077, 1216
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	235, 1073
HapII	CCGG	4 cut(s)	122, 182, 359, 962
HgaI	GACGC	1 cut(s)	1041
HhaI	GCGC	2 cut(s)	96, 263
Hin1II	CATG	2 cut(s)	787, 802
Hin6I	GCGC	2 cut(s)	94, 261
HinP1I	GCGC	2 cut(s)	94, 261
HinfI	GANTC	2 cut(s)	310, 632
HpaII	CCGG	4 cut(s)	122, 182, 359, 962
HphI	GGTGA	2 cut(s)	56, 132
Hpy166II	GTNNAC	2 cut(s)	509, 603
Hpy188I	TCNGA	6 cut(s)	11, 243, 378, 494, 752, 1020
Hpy188III	TCNNGA	9 cut(s)	23, 34, 63, 194, 307, 314, 546, 812, 1135
Hpy8I	GTNNAC	2 cut(s)	509, 603
HpyAV	CCTTC	6 cut(s)	346, 481, 676, 809, 866, 1207
HpyCH4III	ACNGT	5 cut(s)	426, 607, 617, 727, 1042
HpyCH4IV	ACGT	2 cut(s)	15, 459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1000, 1193, 1215
HpyF3I	CTNAG	2 cut(s)	437, 634
HpySE526I	ACGT	2 cut(s)	15, 459
Hsp92II	CATG	2 cut(s)	787, 802
HspAI	GCGC	2 cut(s)	94, 261
Kzo9I	GATC	5 cut(s)	373, 378, 593, 893, 958
LmnI	GCTCC	2 cut(s)	832, 988
Lsp1109I	GCAGC	7 cut(s)	367, 491, 913, 990, 1012, 1063, 1227
LweI	GCATC	3 cut(s)	155, 670, 789
MaeI	CTAG	2 cut(s)	921, 987
MaeII	ACGT	2 cut(s)	15, 459
MaeIII	GTNAC	3 cut(s)	44, 923, 1036
MalI	GATC	5 cut(s)	375, 380, 595, 895, 960
MboI	GATC	5 cut(s)	373, 378, 593, 893, 958
MboII	GAAGA	7 cut(s)	67, 78, 89, 1066, 1121, 1124, 1150
MflI	RGATCY	2 cut(s)	593, 958
MhlI	GDGCHC	1 cut(s)	741
MluI	ACGCGT	2 cut(s)	208, 1033
MlyI	GAGTC	2 cut(s)	304, 626
MmeI	TCCRAC	3 cut(s)	229, 547, 860
Mph1103I	ATGCAT	1 cut(s)	782
MroXI	GAANNNNTTC	1 cut(s)	1058
MseI	TTAA	2 cut(s)	393, 1026
MspA1I	CMGCKG	3 cut(s)	1003, 1066, 1076
MspI	CCGG	4 cut(s)	122, 182, 359, 962
MspR9I	CCNGG	4 cut(s)	122, 182, 232, 360
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	3 cut(s)	94, 210, 1035
MwoI	GCNNNNNNNGC	3 cut(s)	1000, 1193, 1215
NciI	CCSGG	3 cut(s)	122, 182, 360
NdeII	GATC	5 cut(s)	373, 378, 593, 893, 958
NlaIII	CATG	2 cut(s)	787, 802
NlaIV	GGNNCC	3 cut(s)	363, 595, 762
NmuCI	GTSAC	2 cut(s)	44, 923
NsiI	ATGCAT	1 cut(s)	782
PaeR7I	CTCGAG	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 30
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	1058
Pfl23II	CGTACG	1 cut(s)	732
PflMI	CCANNNNNTGG	1 cut(s)	1069
PkrI	GCNGC	9 cut(s)	98, 357, 481, 903, 1002, 1005, 1075, 1078, 1217
PleI	GAGTC	2 cut(s)	304, 626
PpsI	GAGTC	2 cut(s)	304, 626
Psp124BI	GAGCTC	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspLI	CGTACG	1 cut(s)	732
PspN4I	GGNNCC	3 cut(s)	363, 595, 762
PspPI	GGNCC	2 cut(s)	362, 761
PstI	CTGCAG	2 cut(s)	1008, 1081
PsuI	RGATCY	2 cut(s)	593, 958
PvuII	CAGCTG	2 cut(s)	1003, 1066
RsaI	GTAC	2 cut(s)	508, 734
RsaNI	GTAC	2 cut(s)	507, 733
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	2 cut(s)	393, 1026
SatI	GCNGC	9 cut(s)	97, 356, 480, 902, 1001, 1004, 1074, 1077, 1216
Sau3AI	GATC	5 cut(s)	373, 378, 593, 893, 958
Sau96I	GGNCC	2 cut(s)	362, 761
SchI	GAGTC	2 cut(s)	304, 626
ScrFI	CCNGG	4 cut(s)	122, 182, 232, 360
SduI	GDGCHC	1 cut(s)	741
SfaNI	GCATC	3 cut(s)	155, 670, 789
SfcI	CTRYAG	3 cut(s)	712, 1004, 1077
Sfr274I	CTCGAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	362, 761
SlaI	CTCGAG	1 cut(s)	546
SmlI	CTYRAG	3 cut(s)	350, 546, 1210
SmoI	CTYRAG	3 cut(s)	350, 546, 1210
SsiI	CCGC	3 cut(s)	97, 144, 1074
SspMI	CTAG	2 cut(s)	921, 987
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	4 cut(s)	120, 180, 230, 358
StyI	CCWWGG	3 cut(s)	525, 692, 764
TaaI	ACNGT	5 cut(s)	426, 607, 617, 727, 1042
TaiI	ACGT	2 cut(s)	18, 462
TaqI	TCGA	5 cut(s)	33, 195, 547, 664, 896
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	2 cut(s)	99, 1076
Tru1I	TTAA	2 cut(s)	393, 1026
Tru9I	TTAA	2 cut(s)	393, 1026
TscAI	CASTG	3 cut(s)	389, 1013, 1047
TseFI	GTSAC	2 cut(s)	44, 923
TseI	GCWGC	7 cut(s)	355, 479, 901, 1000, 1003, 1076, 1215
Tsp45I	GTSAC	2 cut(s)	44, 923
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	3 cut(s)	389, 1013, 1047
Van91I	CCANNNNNTGG	1 cut(s)	1069
VpaK11BI	GGWCC	2 cut(s)	362, 761
XapI	RAATTY	3 cut(s)	539, 1021, 1057
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	1058
XspI	CTAG	2 cut(s)	921, 987
Zsp2I	ATGCAT	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.