Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005533

Physical Location & Seq

Genomic Coordinates Forward (+)

4271549 .. 4274894

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGGAAATGAACATTAAGTACTCAACCACCACCAATGGGAACTTATCTCAAAACGCGCAAGAAATTAAGACAGCACACGCACTTGACTTTCAGAAGGAAACCCCCCAAAACGCCATGAATTCTCACATTGCCGTAACATTATTATCTGTTCTTGCATGCATTTTCCTGAGTGTAGATTCAGCATTTACTCCAAGCAATATCACAGACAAGGAGGCCTTGATATCATTCCAATCAACGGCCAATCTCCCTCCATTTTTCTGGAACCAAAGCTCATCCCCCTGCACCAACTGGACCGGAGTTGCTTGCAACAGAATCGGTGGGACTCAAAGGGTTGTTTCTCTCGATCTTTCCGGCTTCGGACTCACTGGCTCCATAAGCCACCATGTTGGGAGCTTGACAGAGCTTCAAGTCTTGAACTTGGCGCGCAACAATCTCAGCGGTCCAATCCCGCCATCCATAAGCAACCTGTCTTCCACCCTCACAAGTTTGAATCTTGGCACGAACAGCCTCACCGGTATAATCCCAATGGAATTAGGTTTTCTTCGTAAGCTCAAAGAACTTGATCTTGCCGGCAACCAACTCACCGGCACTGTTGCCTTGTCCATATACAACATCTCTTCGCTAGTTCGCTTCACCGTTGCTTCAAACCAACTCTGGGGTGAAATTCCAAGCAACATTGGCGTCACGCTGCCAAACCTTCTCTACTTCAGAAATTGTTTCAATCTGTTTACAGGGAAAATTCCAGCGTCCTTGCACAACATTACAAGTATTCGAGAGCTCCGACTGTCCAACAATTTCCATGACGGTTCGGTTCCACCAGGCCTCGGAAATCTTCCCTTCCTTGAAATGTACAACATTGGTTTCAATCGGATCGTTAGCTATGGTGACAATGGTCTTAATTTGATTACTTCTTTGACAAACAGCAGTCGCTTAAGTTGGCTTGCAATTGACGAAAATCAGTTGGAAGGCCTAATTCCAGAGTCCATTGGCAACCTCTCCAAGGTTCTTTCGAAATTGTACATGGGAGGGAATCGAATTTATGGTAACATACCTGCCTCAATTAGTCAACTCAGTAGCTTAACTTTGCTAAATGTGACCTACAATTCAATTTCTGGTGAAATCCCATCAGAAATTGGGCAGCTGAAAGAGTTGCAAGTGCTTGGGTTAGCAAGAAACAAATTATCTGGCACAATTCCTAACTCCTTAGGTAATATCATGAAATTGAATCACGTTAATTTATCTGGAAATTACTTTGTTGGCAATATACCCCTTGCATTTTCAAACTTTCAGAAATTGCTTTCCATGGACTTATCCGACAATTCGCTCAACGGAAGCATTTCCGGAGAAATATTTCTAAACCTTCCTAGTTTGAGCACAATTTTGAATTTGTCTAACAACCTTCTAAGTGGACCTTTGCCTGAAGAAATTGGAGTACTAGCAAGTGTTGTCACTATAGACCTCTCCAACAACGGCTTATCGGGATCAATTCCCAGCTCAGTCGGAAAATGTACAAGCTTGGAGAGATTGTTCATTGCAAGAAACAACCTCTCCGGTCCTCTTCCAAATTCTCTAGCTGAAATCAGAGGTCTTGAGATTCTAGACCTCTCCTCGAACAAGCTTTCTGGTTTTATTCCTGATAAACTTCAAGAACTACAGGTCCTTAGCTTCTTGAACCTCTCATTTAACAGCTTAGAGGGAGTAATTCCTAATGGTGGAGTGTTTGTTAGAAATATCTCAAGTGTATATCTAGAAGGAAACTGGAAACTTTGCCGAGATAGGCCATGTGTGAAGAGTGGTGGTCAGAGGAGAAAAGTACTGGTTTTAGTTCTTATCATAACATCTGTTCTGGCAGCATTGGTAGGCATTGTGGTAATTGCCTGGTTGCTTTATGTTAGGAAAAGAAAAGGCTTAGGCTGCAAAACAACAATTAGAGAAACTTCTCCTGATTTATTAATAAAAGGGCAACATCAATTGGTCACATACGAAGAGCTCCGCAGCGCAACTGGGAATTTCAACCCGGAAAATTTGGTTGGAAGTGGGAGCTTTGGGACTGTATACAGAGGGTTTTTAAGACAAGGGACTGAAGTTGCAGTGAAGGTGCTTGATATAAAAATGACAGGATCTCGGAAGAGTTTTTTGGCAGAATGTGAGGCGTTGAGGAACGTGAGGCACCGCAATCTTGTTAAGTTGATCACTTCGTGCTCGAGGGTGGATTTTAAAAACATGGAGTTTCTGGCCTTGGTTTATGAGTATTTGAGTAATGGGAGCTTGGAAGATTGGATTAAGGGCAAGAAAAAGAATGCAGATGGAGATGGATTGAACATTTTGGAGAGACTCAACGTGGCCATTGATGTGGCGTGTGGATTAGATTATCTGCACCACGATTGCGAAGTTCCAGTTGTACATTGTGATTTAAAGCCGAGCAACATTCTTTTGGATGGAGACATGACTGCAAAGATTGGAGATTTCGGGCTGGCGAAGCTGCTCATGGAGAGAACAGAGATTACTCAACATTCTCTTAGCTCCACAAATGTTCTGAAGGGTTCTATAGGATACATACCACCAGAGTATGGTTTTGGACAGAAACCATCGACAGCGGGAGATGCATACAGTTTCGGAGTGATGTTGCTGGAGATCTTCACCGGAAAAAGTCCAACCGACGAAAGTTTCACAGGAGACGAAAACCTCATCAGATGGGTGCAATCAGCCATCCCTCACAACATGATCAAAGTGCTAGACCCTGAGCTGCTAGACCTCATGCACTGCCTGCCTAATGAAGGGCCGTGTCTCATCCCAGCAGAAGAACATAATTGCCTGGTCTTAATTTTCGAAGTTGGACTCTCTTGCACTTGCGTTTCGCCTGACGGACGCAGTAGCTTGAGGGAGGCACTTTACAAACTAGAAACTGCAAGGCAAACCCTGTTCAATGTTGAGAGTGTCAACAGTCAAGCATTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

987

Amino Acids

107.17

Weight (kDa)

6.2

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	134 - 194	6.5e-07	Leucine rich repeat
LRR_14	PF23598	303 - 413	5.7e-08	Leucine-rich repeat region
LRR_14	PF23598	425 - 563	1.6e-09	Leucine-rich repeat region
LRR_8	PF13855	482 - 540	2.3e-06	Leucine rich repeat
LRR_8	PF13855	505 - 564	3.3e-06	Leucine rich repeat
Pkinase	PF00069	673 - 921	1.9e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	675 - 921	3.8e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36850 FvH4_3g36850 FvH4_3g36850
malus_domestica	MD08G1090900.v1.1 MD15G1074900.v1.1 MD15G1075000.v1.1
prunus_persica	Prupe.1G427400_v2.0.a1 Prupe.1G427700_v2.0.a1 Prupe.1G427800_v2.0.a1 Prupe.1G427800_v2.0.a1 Prupe.1G427800_v2.0.a1
pyrus_communis	pycom15g06980 pycom15g06990
rosa_chinensis	RchiOBHm_Chr5g0066001 RchiOBHm_Chr5g0066021
rosa_laevigata	RLG00000035833 RLG00000035834
rosa_multiflora	Rmu_sc0001473.1_g000006 Rmu_sc0011576.1_g000012 Rmu_sc0011576.1_g000015
rosa_roxburghii	Rroxscaffold_1G00014980 Rroxscaffold_1G00015120
rosa_rugosa	Rorug05G0375800 Rorug05G0375900 Rorug05G0376000
rosa_samantha	Rh5AG434300 Rh5AG434500 Rh5CG472900
rosa_wichuraiana	Rw5G040690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1060
AccB1I	GGYRCC	1 cut(s)	2169
AccB7I	CCANNNNNTGG	1 cut(s)	2570
AccI	GTMKAC	1 cut(s)	2055
AccII	CGCG	2 cut(s)	56, 424
AccIII	TCCGGA	1 cut(s)	1340
AciI	CCGC	5 cut(s)	438, 449, 1993, 2173, 2597
AclWI	GGATC	3 cut(s)	878, 1489, 2128
AcoI	YGGCCR	2 cut(s)	237, 2343
AcsI	RAATTY	8 cut(s)	118, 663, 738, 1035, 1384, 1564, 2008, 2023
AcuI	CTGAAG	4 cut(s)	691, 1440, 2103, 2558
AcyI	GRCGYC	1 cut(s)	681
AdeI	CACNNNGTG	1 cut(s)	2199
AfaI	GTAC	7 cut(s)	20, 851, 1019, 1434, 1510, 1815, 2403
AfiI	CCNNNNNNNGG	8 cut(s)	36, 235, 655, 824, 1000, 1712, 2570, 2777
AflII	CTTAAG	1 cut(s)	931
AgeI	ACCGGT	1 cut(s)	512
AjnI	CCWGG	3 cut(s)	817, 1877, 2814
AjuI	GAANNNNNNNTTGG	4 cut(s)	2013, 2045, 2120, 2152
AloI	GAACNNNNNNTCC	4 cut(s)	1511, 1543, 1641, 1673
Alw21I	GWGCWC	4 cut(s)	780, 1376, 1992, 2204
Alw26I	GTCTC	4 cut(s)	2326, 2436, 2670, 2792
AlwI	GGATC	3 cut(s)	878, 1489, 2128
Ama87I	CYCGRG	1 cut(s)	2203
Aor13HI	TCCGGA	1 cut(s)	1340
AoxI	GGCC	8 cut(s)	213, 237, 820, 967, 1778, 2235, 2343, 2780
ApeKI	GCWGC	7 cut(s)	688, 1138, 1850, 1914, 1995, 2482, 2746
ApoI	RAATTY	8 cut(s)	118, 663, 738, 1035, 1384, 1564, 2008, 2023
AseI	ATTAAT	1 cut(s)	1952
AsiGI	ACCGGT	1 cut(s)	512
Asp700I	GAANNNNTTC	2 cut(s)	1336, 1350
AspLEI	GCGC	4 cut(s)	58, 424, 426, 2000
AspS9I	GGNCC	6 cut(s)	291, 440, 1409, 1553, 1657, 2780
AsuC2I	CCSGG	1 cut(s)	2018
AsuHPI	GGTGA	7 cut(s)	502, 574, 625, 671, 896, 1127, 2632
AsuII	TTCGAA	2 cut(s)	1010, 2829
AvaI	CYCGRG	1 cut(s)	2203
AvaII	GGWCC	5 cut(s)	291, 440, 1409, 1553, 1657
AxyI	CCTNAGG	1 cut(s)	1204
BalI	TGGCCA	1 cut(s)	2345
BanI	GGYRCC	1 cut(s)	2169
BanII	GRGCYC	2 cut(s)	780, 1992
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	4 cut(s)	780, 1376, 1992, 2204
BbvI	GCAGC	7 cut(s)	675, 1150, 1862, 1901, 2007, 2469, 2733
BccI	CCATC	8 cut(s)	460, 1132, 2300, 2306, 2432, 2596, 2688, 2717
BceAI	ACGGC	4 cut(s)	116, 252, 1486, 2767
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	3 cut(s)	819, 1879, 2816
BciVI	GTATCC	1 cut(s)	2546
BclI	TGATCA	2 cut(s)	2190, 2724
BcnI	CCSGG	1 cut(s)	2018
BcoDI	GTCTC	4 cut(s)	2326, 2436, 2670, 2792
BfaI	CTAG	9 cut(s)	623, 1365, 1436, 1571, 1598, 1748, 2735, 2750, 2900
BfmI	CTRYAG	3 cut(s)	1452, 1652, 2547
BfrI	CTTAAG	1 cut(s)	931
BfuAI	ACCTGC	1 cut(s)	1060
BfuI	GTATCC	1 cut(s)	2546
BglII	AGATCT	1 cut(s)	2634
BisI	GCNGC	7 cut(s)	689, 1139, 1851, 1915, 1996, 2483, 2747
BlsI	GCNGC	7 cut(s)	690, 1140, 1852, 1916, 1997, 2484, 2748
BmcAI	AGTACT	3 cut(s)	20, 1434, 1815
Bme1390I	CCNGG	4 cut(s)	819, 1879, 2018, 2816
Bme18I	GGWCC	5 cut(s)	291, 440, 1409, 1553, 1657
BmeT110I	CYCGRG	1 cut(s)	2203
BmgT120I	GGNCC	6 cut(s)	291, 440, 1409, 1553, 1657, 2780
BmiI	GGNNCC	4 cut(s)	263, 370, 813, 2171
BmrFI	CCNGG	4 cut(s)	819, 1879, 2018, 2816
BmrI	ACTGGG	1 cut(s)	2013
BmsI	GCATC	1 cut(s)	2593
BmuI	ACTGGG	1 cut(s)	2013
BoxI	GACNNNNGTC	1 cut(s)	891
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	2651
Bpu10I	CCTNAGC	3 cut(s)	1661, 1909, 2742
Bpu14I	TTCGAA	2 cut(s)	1010, 2829
BpuEI	CTTGAG	3 cut(s)	1610, 1720, 2899
BpuMI	CCSGG	1 cut(s)	2018
BsaHI	GRCGYC	1 cut(s)	681
BsaJI	CCNNGG	4 cut(s)	823, 999, 1302, 2238
BsaWI	WCCGGW	5 cut(s)	293, 512, 1340, 1550, 2642
BsaXI	ACNNNNNCTCC	6 cut(s)	1511, 1532, 1541, 1562, 1707, 1737
Bsc4I	CCNNNNNNNGG	8 cut(s)	36, 235, 655, 824, 1000, 1712, 2570, 2777
Bse118I	RCCGGY	3 cut(s)	512, 569, 584
Bse1I	ACTGG	6 cut(s)	293, 370, 1763, 1821, 2008, 2396
Bse21I	CCTNAGG	1 cut(s)	1204
Bse3DI	GCAATG	2 cut(s)	126, 1530
BseAI	TCCGGA	1 cut(s)	1340
BseBI	CCWGG	3 cut(s)	819, 1879, 2816
BseDI	CCNNGG	4 cut(s)	823, 999, 1302, 2238
BseGI	GGATG	5 cut(s)	272, 452, 2443, 2709, 2790
BseLI	CCNNNNNNNGG	8 cut(s)	36, 235, 655, 824, 1000, 1712, 2570, 2777
BseMI	GCAATG	2 cut(s)	126, 1530
BseMII	CTCAG	5 cut(s)	158, 448, 1084, 1509, 2733
BseNI	ACTGG	6 cut(s)	293, 370, 1763, 1821, 2008, 2396
BsePI	GCGCGC	1 cut(s)	422
BseRI	GAGGAG	2 cut(s)	1597, 1819
BseXI	GCAGC	7 cut(s)	675, 1150, 1862, 1901, 2007, 2469, 2733
BseYI	CCCAGC	2 cut(s)	1490, 2794
BsgI	GTGCAG	2 cut(s)	265, 2360
Bsh1236I	CGCG	2 cut(s)	56, 424
BshFI	GGCC	8 cut(s)	215, 239, 822, 969, 1780, 2237, 2345, 2782
BshNI	GGYRCC	1 cut(s)	2169
BshTI	ACCGGT	1 cut(s)	512
BsiHKAI	GWGCWC	4 cut(s)	780, 1376, 1992, 2204
BsiHKCI	CYCGRG	1 cut(s)	2203
BsiSI	CCGG	9 cut(s)	294, 351, 513, 570, 585, 1341, 1551, 2018, 2643
BslFI	GGGAC	3 cut(s)	334, 2062, 2092
BslI	CCNNNNNNNGG	8 cut(s)	36, 235, 655, 824, 1000, 1712, 2570, 2777
BsmAI	GTCTC	4 cut(s)	2326, 2436, 2670, 2792
BsmBI	CGTCTC	1 cut(s)	2670
BsmFI	GGGAC	3 cut(s)	334, 2062, 2092
BsmI	GAATGC	1 cut(s)	2305
BsnI	GGCC	8 cut(s)	215, 239, 822, 969, 1780, 2237, 2345, 2782
BsoBI	CYCGRG	1 cut(s)	2203
Bsp119I	TTCGAA	2 cut(s)	1010, 2829
Bsp1286I	GDGCHC	4 cut(s)	780, 1376, 1992, 2204
Bsp13I	TCCGGA	1 cut(s)	1340
Bsp1407I	TGTACA	4 cut(s)	849, 1017, 1508, 2401
Bsp143I	GATC	8 cut(s)	343, 562, 870, 1481, 2120, 2190, 2634, 2724
Bsp19I	CCATGG	1 cut(s)	1302
BspACI	CCGC	5 cut(s)	438, 449, 1993, 2173, 2597
BspANI	GGCC	8 cut(s)	215, 239, 822, 969, 1780, 2237, 2345, 2782
BspCNI	CTCAG	5 cut(s)	159, 447, 1083, 1508, 2734
BspEI	TCCGGA	1 cut(s)	1340
BspFNI	CGCG	2 cut(s)	56, 424
BspHI	TCATGA	1 cut(s)	1215
BspLI	GGNNCC	4 cut(s)	263, 370, 813, 2171
BspMI	ACCTGC	1 cut(s)	1060
BspPI	GGATC	3 cut(s)	878, 1489, 2128
BspQI	GCTCTTC	1 cut(s)	1980
BspT104I	TTCGAA	2 cut(s)	1010, 2829
BspT107I	GGYRCC	1 cut(s)	2169
BspTI	CTTAAG	1 cut(s)	931
BsrDI	GCAATG	2 cut(s)	126, 1530
BsrFI	RCCGGY	3 cut(s)	512, 569, 584
BsrGI	TGTACA	4 cut(s)	849, 1017, 1508, 2401
BsrI	ACTGG	6 cut(s)	293, 370, 1763, 1821, 2008, 2396
BssAI	RCCGGY	3 cut(s)	512, 569, 584
BssECI	CCNNGG	4 cut(s)	823, 999, 1302, 2238
BssHII	GCGCGC	1 cut(s)	422
BssMI	GATC	8 cut(s)	343, 562, 870, 1481, 2120, 2190, 2634, 2724
BssNAI	GTATAC	1 cut(s)	2056
BssNI	GRCGYC	1 cut(s)	681
BssT1I	CCWWGG	3 cut(s)	999, 1302, 2238
Bst1107I	GTATAC	1 cut(s)	2056
Bst2UI	CCWGG	3 cut(s)	819, 1879, 2816
Bst4CI	ACNGT	7 cut(s)	592, 637, 786, 806, 2053, 2612, 2945
Bst6I	CTCTTC	5 cut(s)	622, 1563, 1784, 1980, 2123
BstACI	GRCGYC	1 cut(s)	681
BstAFI	CTTAAG	1 cut(s)	931
BstAPI	GCANNNNNTGC	1 cut(s)	2767
BstAUI	TGTACA	4 cut(s)	849, 1017, 1508, 2401
BstBI	TTCGAA	2 cut(s)	1010, 2829
BstC8I	GCNNGC	7 cut(s)	157, 304, 424, 571, 942, 2475, 2768
BstDSI	CCRYGG	1 cut(s)	1302
BstENI	CCTNNNNNAGG	2 cut(s)	998, 2775
BstF5I	GGATG	5 cut(s)	272, 452, 2443, 2709, 2790
BstFNI	CGCG	2 cut(s)	56, 424
BstHHI	GCGC	4 cut(s)	58, 424, 426, 2000
BstKTI	GATC	8 cut(s)	346, 565, 873, 1484, 2123, 2193, 2637, 2727
BstMAI	GTCTC	4 cut(s)	2326, 2436, 2670, 2792
BstMBI	GATC	8 cut(s)	343, 562, 870, 1481, 2120, 2190, 2634, 2724
BstMWI	GCNNNNNNNGC	7 cut(s)	375, 504, 678, 1914, 2479, 2603, 2767
BstNI	CCWGG	3 cut(s)	819, 1879, 2816
BstNSI	RCATGY	1 cut(s)	159
BstPAI	GACNNNNGTC	1 cut(s)	891
BstSCI	CCNGG	4 cut(s)	817, 1877, 2016, 2814
BstSFI	CTRYAG	3 cut(s)	1452, 1652, 2547
BstUI	CGCG	2 cut(s)	56, 424
BstV1I	GCAGC	7 cut(s)	675, 1150, 1862, 1901, 2007, 2469, 2733
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	2120, 2634
BstXI	CCANNNNNNTGG	3 cut(s)	258, 386, 2353
BstYI	RGATCY	2 cut(s)	2120, 2634
BstZ17I	GTATAC	1 cut(s)	2056
Bsu36I	CCTNAGG	1 cut(s)	1204
BsuI	GTATCC	1 cut(s)	2546
BsuRI	GGCC	8 cut(s)	215, 239, 822, 969, 1780, 2237, 2345, 2782
BtgI	CCRYGG	1 cut(s)	1302
BtsCI	GGATG	5 cut(s)	272, 452, 2443, 2709, 2790
BtsI	GCAGTG	2 cut(s)	2097, 2761
BtsIMutI	CAGTG	4 cut(s)	363, 588, 2097, 2761
BveI	ACCTGC	1 cut(s)	1060
Cac8I	GCNNGC	7 cut(s)	157, 304, 424, 571, 942, 2475, 2768
CciI	TCATGA	1 cut(s)	1215
CfoI	GCGC	4 cut(s)	58, 424, 426, 2000
Cfr10I	RCCGGY	3 cut(s)	512, 569, 584
Cfr13I	GGNCC	6 cut(s)	291, 440, 1409, 1553, 1657, 2780
CseI	GACGC	3 cut(s)	670, 735, 2877
Csp6I	GTAC	7 cut(s)	19, 850, 1018, 1433, 1509, 1814, 2402
CspAI	ACCGGT	1 cut(s)	512
CviQI	GTAC	7 cut(s)	19, 850, 1018, 1433, 1509, 1814, 2402
DpnI	GATC	8 cut(s)	345, 564, 872, 1483, 2122, 2192, 2636, 2726
DpnII	GATC	8 cut(s)	343, 562, 870, 1481, 2120, 2190, 2634, 2724
DraI	TTTAAA	2 cut(s)	2218, 2415
DraIII	CACNNNGTG	1 cut(s)	2199
EaeI	YGGCCR	2 cut(s)	237, 2343
Eam1104I	CTCTTC	5 cut(s)	622, 1563, 1784, 1980, 2123
EarI	CTCTTC	5 cut(s)	622, 1563, 1784, 1980, 2123
Ecl136II	GAGCTC	2 cut(s)	778, 1990
Eco130I	CCWWGG	3 cut(s)	999, 1302, 2238
Eco147I	AGGCCT	3 cut(s)	215, 822, 969
Eco24I	GRGCYC	2 cut(s)	780, 1992
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	5 cut(s)	291, 440, 1409, 1553, 1657
Eco53kI	GAGCTC	2 cut(s)	778, 1990
Eco57I	CTGAAG	4 cut(s)	691, 1440, 2103, 2558
Eco81I	CCTNAGG	1 cut(s)	1204
Eco88I	CYCGRG	1 cut(s)	2203
EcoICRI	GAGCTC	2 cut(s)	778, 1990
EcoNI	CCTNNNNNAGG	2 cut(s)	998, 2775
EcoO109I	RGGNCCY	1 cut(s)	1657
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	3 cut(s)	817, 1877, 2814
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	3 cut(s)	999, 1302, 2238
EcoT22I	ATGCAT	2 cut(s)	161, 2608
EcoT38I	GRGCYC	2 cut(s)	780, 1992
ErhI	CCWWGG	3 cut(s)	999, 1302, 2238
Esp3I	CGTCTC	1 cut(s)	2670
FalI	AAGNNNNNCTT	4 cut(s)	200, 232, 1396, 1428
FaqI	GGGAC	3 cut(s)	334, 2062, 2092
FauI	CCCGC	2 cut(s)	456, 2590
FbaI	TGATCA	2 cut(s)	2190, 2724
FblI	GTMKAC	1 cut(s)	2055
Fnu4HI	GCNGC	7 cut(s)	689, 1139, 1851, 1915, 1996, 2483, 2747
FokI	GGATG	5 cut(s)	259, 439, 2450, 2696, 2777
FriOI	GRGCYC	2 cut(s)	780, 1992
Fsp4HI	GCNGC	7 cut(s)	689, 1139, 1851, 1915, 1996, 2483, 2747
FspBI	CTAG	9 cut(s)	623, 1365, 1436, 1571, 1598, 1748, 2735, 2750, 2900
GlaI	GCGC	4 cut(s)	57, 423, 425, 1999
GluI	GCNGC	7 cut(s)	689, 1139, 1851, 1915, 1996, 2483, 2747
GsaI	CCCAGC	2 cut(s)	1494, 2798
GsuI	CTGGAG	1 cut(s)	2651
HaeIII	GGCC	8 cut(s)	215, 239, 822, 969, 1780, 2237, 2345, 2782
HapII	CCGG	9 cut(s)	294, 351, 513, 570, 585, 1341, 1551, 2018, 2643
HgaI	GACGC	3 cut(s)	670, 735, 2877
HhaI	GCGC	4 cut(s)	58, 424, 426, 2000
Hin1I	GRCGYC	1 cut(s)	681
Hin6I	GCGC	4 cut(s)	56, 422, 424, 1998
HinP1I	GCGC	4 cut(s)	56, 422, 424, 1998
HincII	GTYRAC	2 cut(s)	1067, 2941
HindII	GTYRAC	2 cut(s)	1067, 2941
HindIII	AAGCTT	2 cut(s)	1513, 1616
HpaII	CCGG	9 cut(s)	294, 351, 513, 570, 585, 1341, 1551, 2018, 2643
HphI	GGTGA	7 cut(s)	502, 574, 625, 671, 896, 1127, 2632
Hpy166II	GTNNAC	5 cut(s)	729, 1067, 1409, 2056, 2941
Hpy8I	GTNNAC	5 cut(s)	729, 1067, 1409, 2056, 2941
Hpy99I	CGWCG	1 cut(s)	2663
HpyCH4III	ACNGT	7 cut(s)	592, 637, 786, 806, 2053, 2612, 2945
HpyCH4IV	ACGT	3 cut(s)	1230, 2163, 2340
HpyF10VI	GCNNNNNNNGC	7 cut(s)	375, 504, 678, 1914, 2479, 2603, 2767
HpySE526I	ACGT	3 cut(s)	1230, 2163, 2340
Hsp92I	GRCGYC	1 cut(s)	681
HspAI	GCGC	4 cut(s)	56, 422, 424, 1998
Kpn2I	TCCGGA	1 cut(s)	1340
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
Ksp22I	TGATCA	2 cut(s)	2190, 2724
Kzo9I	GATC	8 cut(s)	343, 562, 870, 1481, 2120, 2190, 2634, 2724
LguI	GCTCTTC	1 cut(s)	1980
LmnI	GCTCC	7 cut(s)	374, 390, 783, 1995, 2040, 2265, 2528
Lsp1109I	GCAGC	7 cut(s)	675, 1150, 1862, 1901, 2007, 2469, 2733
LweI	GCATC	1 cut(s)	2593
MaeI	CTAG	9 cut(s)	623, 1365, 1436, 1571, 1598, 1748, 2735, 2750, 2900
MaeII	ACGT	3 cut(s)	1230, 2163, 2340
MaeIII	GTNAC	7 cut(s)	133, 682, 884, 1043, 1093, 1447, 1975
MalI	GATC	8 cut(s)	345, 564, 872, 1483, 2122, 2192, 2636, 2726
MboI	GATC	8 cut(s)	343, 562, 870, 1481, 2120, 2190, 2634, 2724
MfeI	CAATTG	2 cut(s)	945, 1970
MflI	RGATCY	2 cut(s)	2120, 2634
MhlI	GDGCHC	4 cut(s)	780, 1376, 1992, 2204
MlsI	TGGCCA	1 cut(s)	2345
MluNI	TGGCCA	1 cut(s)	2345
MlyI	GAGTC	5 cut(s)	316, 354, 989, 2328, 2832
MmeI	TCCRAC	9 cut(s)	805, 813, 942, 1338, 1480, 1488, 2011, 2678, 2815
Mox20I	TGGCCA	1 cut(s)	2345
Mph1103I	ATGCAT	2 cut(s)	161, 2608
MroI	TCCGGA	1 cut(s)	1340
MroNI	GCCGGC	1 cut(s)	569
MroXI	GAANNNNTTC	2 cut(s)	1336, 1350
MscI	TGGCCA	1 cut(s)	2345
MslI	CAYNNNNRTG	1 cut(s)	2351
Msp20I	TGGCCA	1 cut(s)	2345
MspA1I	CMGCKG	3 cut(s)	438, 1141, 2597
MspCI	CTTAAG	1 cut(s)	931
MspI	CCGG	9 cut(s)	294, 351, 513, 570, 585, 1341, 1551, 2018, 2643
MspR9I	CCNGG	4 cut(s)	819, 1879, 2018, 2816
MunI	CAATTG	2 cut(s)	945, 1970
Mva1269I	GAATGC	1 cut(s)	2305
MvaI	CCWGG	3 cut(s)	819, 1879, 2816
MvnI	CGCG	2 cut(s)	56, 424
MwoI	GCNNNNNNNGC	7 cut(s)	375, 504, 678, 1914, 2479, 2603, 2767
NaeI	GCCGGC	1 cut(s)	571
NciI	CCSGG	1 cut(s)	2018
NcoI	CCATGG	1 cut(s)	1302
NdeII	GATC	8 cut(s)	343, 562, 870, 1481, 2120, 2190, 2634, 2724
NgoMIV	GCCGGC	1 cut(s)	569
NlaIV	GGNNCC	4 cut(s)	263, 370, 813, 2171
NmeAIII	GCCGAG	2 cut(s)	1796, 2445
NmuCI	GTSAC	5 cut(s)	682, 884, 1093, 1447, 1975
NsiI	ATGCAT	2 cut(s)	161, 2608
NspI	RCATGY	1 cut(s)	159
NspV	TTCGAA	2 cut(s)	1010, 2829
PaeI	GCATGC	1 cut(s)	159
PaeR7I	CTCGAG	1 cut(s)	2203
PagI	TCATGA	1 cut(s)	1215
PauI	GCGCGC	1 cut(s)	422
PceI	AGGCCT	3 cut(s)	215, 822, 969
PciSI	GCTCTTC	1 cut(s)	1980
PcsI	WCGNNNNNNNCGW	1 cut(s)	778
PctI	GAATGC	1 cut(s)	2305
PdiI	GCCGGC	1 cut(s)	571
PdmI	GAANNNNTTC	2 cut(s)	1336, 1350
PfeI	GAWTC	6 cut(s)	176, 312, 490, 1030, 1225, 1594
PflMI	CCANNNNNTGG	1 cut(s)	2570
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	7 cut(s)	690, 1140, 1852, 1916, 1997, 2484, 2748
PleI	GAGTC	5 cut(s)	316, 354, 988, 2328, 2832
PpsI	GAGTC	5 cut(s)	316, 354, 988, 2328, 2832
PpuMI	RGGWCCY	1 cut(s)	1657
PshAI	GACNNNNGTC	1 cut(s)	891
PshBI	ATTAAT	1 cut(s)	1952
Psp124BI	GAGCTC	2 cut(s)	780, 1992
Psp5II	RGGWCCY	1 cut(s)	1657
Psp6I	CCWGG	3 cut(s)	817, 1877, 2814
PspFI	CCCAGC	2 cut(s)	1490, 2794
PspGI	CCWGG	3 cut(s)	817, 1877, 2814
PspN4I	GGNNCC	4 cut(s)	263, 370, 813, 2171
PspPI	GGNCC	6 cut(s)	291, 440, 1409, 1553, 1657, 2780
PspPPI	RGGWCCY	1 cut(s)	1657
PspXI	VCTCGAGB	1 cut(s)	2203
PsrI	GAACNNNNNNTAC	3 cut(s)	34, 2488, 2520
PsuI	RGATCY	2 cut(s)	2120, 2634
PteI	GCGCGC	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	1141
RsaI	GTAC	7 cut(s)	20, 851, 1019, 1434, 1510, 1815, 2403
RsaNI	GTAC	7 cut(s)	19, 850, 1018, 1433, 1509, 1814, 2402
RseI	CAYNNNNRTG	1 cut(s)	2351
SacI	GAGCTC	2 cut(s)	780, 1992
SapI	GCTCTTC	1 cut(s)	1980
SatI	GCNGC	7 cut(s)	689, 1139, 1851, 1915, 1996, 2483, 2747
Sau3AI	GATC	8 cut(s)	343, 562, 870, 1481, 2120, 2190, 2634, 2724
Sau96I	GGNCC	6 cut(s)	291, 440, 1409, 1553, 1657, 2780
ScaI	AGTACT	3 cut(s)	20, 1434, 1815
SchI	GAGTC	5 cut(s)	316, 354, 989, 2328, 2832
ScrFI	CCNGG	4 cut(s)	819, 1879, 2018, 2816
SduI	GDGCHC	4 cut(s)	780, 1376, 1992, 2204
SfaNI	GCATC	1 cut(s)	2593
SfcI	CTRYAG	3 cut(s)	1452, 1652, 2547
Sfr274I	CTCGAG	1 cut(s)	2203
SfuI	TTCGAA	2 cut(s)	1010, 2829
SinI	GGWCC	5 cut(s)	291, 440, 1409, 1553, 1657
SlaI	CTCGAG	1 cut(s)	2203
SmiMI	CAYNNNNRTG	1 cut(s)	2351
SmlI	CTYRAG	5 cut(s)	931, 1589, 1735, 2203, 2878
SmoI	CTYRAG	5 cut(s)	931, 1589, 1735, 2203, 2878
SphI	GCATGC	1 cut(s)	159
SseBI	AGGCCT	3 cut(s)	215, 822, 969
SsiI	CCGC	5 cut(s)	438, 449, 1993, 2173, 2597
SspI	AATATT	1 cut(s)	1350
SspMI	CTAG	9 cut(s)	623, 1365, 1436, 1571, 1598, 1748, 2735, 2750, 2900
SstI	GAGCTC	2 cut(s)	780, 1992
StuI	AGGCCT	3 cut(s)	215, 822, 969
StyD4I	CCNGG	4 cut(s)	817, 1877, 2016, 2814
StyI	CCWWGG	3 cut(s)	999, 1302, 2238
TaaI	ACNGT	7 cut(s)	592, 637, 786, 806, 2053, 2612, 2945
TaiI	ACGT	3 cut(s)	1233, 2166, 2343
TaqI	TCGA	8 cut(s)	342, 772, 1010, 1033, 1610, 2204, 2591, 2829
TatI	WGTACW	7 cut(s)	18, 849, 1017, 1432, 1508, 1813, 2401
TfiI	GAWTC	6 cut(s)	176, 312, 490, 1030, 1225, 1594
TscAI	CASTG	4 cut(s)	370, 595, 2097, 2768
TseFI	GTSAC	5 cut(s)	682, 884, 1093, 1447, 1975
TseI	GCWGC	7 cut(s)	688, 1138, 1850, 1914, 1995, 2482, 2746
Tsp45I	GTSAC	5 cut(s)	682, 884, 1093, 1447, 1975
TspDTI	ATGAA	5 cut(s)	23, 131, 1232, 1519, 2790
TspGWI	ACGGA	2 cut(s)	1344, 2880
TspRI	CASTG	4 cut(s)	370, 595, 2097, 2768
Van91I	CCANNNNNTGG	1 cut(s)	2570
Vha464I	CTTAAG	1 cut(s)	931
VpaK11BI	GGWCC	5 cut(s)	291, 440, 1409, 1553, 1657
VspI	ATTAAT	1 cut(s)	1952
XagI	CCTNNNNNAGG	2 cut(s)	998, 2775
XapI	RAATTY	8 cut(s)	118, 663, 738, 1035, 1384, 1564, 2008, 2023
XbaI	TCTAGA	2 cut(s)	1597, 1747
XceI	RCATGY	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	2203
XmiI	GTMKAC	1 cut(s)	2055
XmnI	GAANNNNTTC	2 cut(s)	1336, 1350
XspI	CTAG	9 cut(s)	623, 1365, 1436, 1571, 1598, 1748, 2735, 2750, 2900
ZrmI	AGTACT	3 cut(s)	20, 1434, 1815
Zsp2I	ATGCAT	2 cut(s)	161, 2608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.