Rorug05G0375800
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
50730570 .. 50730959
390 bp
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UTR
Exon/CDS
Intron
Rorug05G0375800.1

Sequence Viewer

Length: 288 bp
ATGAGTAGTGTGCTTCCCAGTTTTGCCTCTCTTCTGTTTTGGGTTTGTTCCACCGTTTCATCTGAGCGGAGAGCCAAGGGAACAGAGGAACAAGGGGGAGAAAAAGAAAAGGTGGAAGGGAAGCTCTCTGGCAAAACCATCAGTCCGGCGGTTTGTTGCCGCCGTGTCCCACCGTGTCAGGCTTTTTGTTCTTGGACTGCCTGTCTTCAACACAGGGAAAGAAGAAGGAGAGGGATCTGGGTCTTCATTCAGGTTTTGATTTGGAAGTTTAAAGAAGAGGACCTTTGA

Protein Analysis

95

Amino Acids

10.88

Weight (kDa)

9.27

Isoelectric Point (pI)

74.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AciI CCGC 3 cut(s) 67, 149, 160
AclWI GGATC 1 cut(s) 242
AgsI TTSAA 1 cut(s) 209
AhdI GACNNNNNGTC 1 cut(s) 201
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwI GGATC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 280
AvaII GGWCC 1 cut(s) 280
BbsI GAAGAC 2 cut(s) 197, 235
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 147
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 280
BmeRI GACNNNNNGTC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 280
BmrI ACTGGG 1 cut(s) 12
BmuI ACTGGG 1 cut(s) 12
BpiI GAAGAC 2 cut(s) 197, 235
BsaJI CCNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 3 cut(s) 67, 149, 160
BspCNI CTCAG 1 cut(s) 55
BspPI GGATC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 55, 174
Bst6I CTCTTC 2 cut(s) 36, 270
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstV2I GAAGAC 2 cut(s) 197, 235
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 280
CviJI RGCY 3 cut(s) 74, 124, 182
CviKI_1 RGCY 3 cut(s) 74, 124, 182
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraI TTTAAA 1 cut(s) 271
DriI GACNNNNNGTC 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 36, 270
Eam1105I GACNNNNNGTC 1 cut(s) 201
EarI CTCTTC 2 cut(s) 36, 270
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FalI AAGNNNNNCTT 1 cut(s) 267
FaqI GGGAC 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 160
HapII CCGG 1 cut(s) 146
HpaII CCGG 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 110, 219
HpyCH4III ACNGT 2 cut(s) 55, 174
HpyF3I CTNAG 1 cut(s) 63
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 8 cut(s) 31, 114, 159, 164, 199, 214, 223, 236
MalI GATC 1 cut(s) 236
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 234
MboII GAAGA 5 cut(s) 23, 197, 234, 235, 287
MflI RGATCY 1 cut(s) 234
MnlI CCTC 4 cut(s) 37, 79, 224, 271
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 146
NdeII GATC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 1 cut(s) 234
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 280
SetI ASST 4 cut(s) 114, 126, 255, 285
SinI GGWCC 1 cut(s) 280
SsiI CCGC 3 cut(s) 67, 149, 160
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 55, 174
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 48, 235
VpaK11BI GGWCC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.