Rroxscaffold_1G00014980
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
18583440 .. 18590197
6758 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00014980.1

Sequence Viewer

Length: 747 bp
ATGGAGTTTCTGGCTTTGGTTTATGAGTATCTGAGTAACGGGAGCTTGGAAGATTGGATTAGGGGCAAGAGAACAAATTCAGATGGAGACGGTTTGAGCATTGTGGAGAGATTGAATGCGGCAATTGATGTTGCTTGTGGATTGGATTACCTGCATAATGATTGTGAAGTTCCAGTGGCTCACTGTGATTTGAAGCCAAGCAACATTCTTTTGGACAAAGACATGACTGCAAAGGTTGGAGATTTTGGGCTGGCAAAGTTACTGATACAGGAAACACCCACTCAACATTCTATTGGCTCCACCAATGTCCTCAAGGGTTCCATAGGATATATACCGCCAGAATATGGTTTTGGACAAAAACCCTCCACAGCTGGAGATGCATACAGTTTTGGAGTAATGTTGTTGGAGCTGTTTACTGGAAAAAGTCCAACCGATGAAAGCTTCACAGGAGAAGTTAACCTCGTTCAATGGGTGCAGTCATCTTTTCCCCACAACATAGCACAAGTACTAGACTCTCAGTTGTCACACTATGAGCACGACGAAGGCTCAAATCCCATCTCATCAGAAGAACTGAATTGTCTGATCTCAGTTATTGAGGTTGGGCTCTCTTGCACCTTCGCCTCTCCTGATGGACGGATTAGCTTGAGGGATGCCCTTCACAAACTTCAAACTGCTAGAGAGACGCTTTTGAAGCTTGCTCACTTTGACAGTGCAGCGTGTAAATTTCAACAACAATTGGAGTTTTGA

Protein Analysis

248

Amino Acids

27.17

Weight (kDa)

4.69

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 156 1.5e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 147 8.4e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 344
AciI CCGC 2 cut(s) 119, 335
AcsI RAATTY 2 cut(s) 76, 722
AfaI GTAC 1 cut(s) 507
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 6 cut(s) 115, 193, 467, 668, 691, 728
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 6 cut(s) 45, 371, 409, 441, 642, 694
AluI AGCT 6 cut(s) 45, 371, 409, 441, 642, 694
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 2 cut(s) 81, 674
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 2 cut(s) 76, 722
Asp700I GAANNNNTTC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 725
BccI CCATC 3 cut(s) 77, 563, 623
BcoDI GTCTC 2 cut(s) 81, 674
BfaI CTAG 2 cut(s) 509, 675
BfuAI ACCTGC 1 cut(s) 159
BisI GCNGC 2 cut(s) 120, 714
BlsI GCNGC 2 cut(s) 121, 715
BmcAI AGTACT 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 298, 319
BmsI GCATC 2 cut(s) 367, 640
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 296, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 173, 421
BseGI GGATG 1 cut(s) 655
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 3 cut(s) 23, 530, 600
BseNI ACTGG 2 cut(s) 173, 421
BseXI GCAGC 1 cut(s) 725
BsgI GTGCAG 2 cut(s) 494, 732
BsiHKAI GWGCWC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 81, 674
BsmBI CGTCTC 2 cut(s) 81, 674
BsmI GAATGC 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 537, 606
Bsp143I GATC 1 cut(s) 582
BspACI CCGC 2 cut(s) 119, 335
BspCNI CTCAG 3 cut(s) 24, 529, 599
BspLI GGNNCC 2 cut(s) 298, 319
BspMI ACCTGC 1 cut(s) 159
BsrI ACTGG 2 cut(s) 173, 421
BssMI GATC 1 cut(s) 582
Bst4CI ACNGT 4 cut(s) 92, 185, 386, 710
BstC8I GCNNGC 2 cut(s) 252, 696
BstDEI CTNAG 3 cut(s) 32, 516, 586
BstF5I GGATG 1 cut(s) 655
BstKTI GATC 1 cut(s) 585
BstMAI GTCTC 2 cut(s) 81, 674
BstMBI GATC 1 cut(s) 582
BstMWI GCNNNNNNNGC 2 cut(s) 377, 691
BstV1I GCAGC 1 cut(s) 725
BtsCI GGATG 1 cut(s) 655
BtsIMutI CAGTG 3 cut(s) 180, 181, 715
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 252, 696
CseI GACGC 1 cut(s) 691
Csp6I GTAC 1 cut(s) 506
CviAII CATG 1 cut(s) 223
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 3 cut(s) 32, 516, 586
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 606
Esp3I CGTCTC 2 cut(s) 81, 674
FaeI CATG 1 cut(s) 226
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 120, 714
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 2 cut(s) 120, 714
FspBI CTAG 2 cut(s) 509, 675
GluI GCNGC 2 cut(s) 120, 714
GsuI CTGGAG 1 cut(s) 393
HgaI GACGC 1 cut(s) 691
Hin1II CATG 1 cut(s) 226
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 2 cut(s) 439, 692
HinfI GANTC 1 cut(s) 512
HpaI GTTAAC 1 cut(s) 457
Hpy166II GTNNAC 2 cut(s) 414, 457
Hpy188I TCNGA 4 cut(s) 33, 82, 565, 582
Hpy188III TCNNGA 1 cut(s) 626
Hpy8I GTNNAC 2 cut(s) 414, 457
Hpy99I CGWCG 1 cut(s) 542
HpyAV CCTTC 3 cut(s) 536, 625, 665
HpyCH4III ACNGT 4 cut(s) 92, 185, 386, 710
HpyCH4V TGCA 6 cut(s) 154, 230, 380, 475, 612, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 691
HpyF3I CTNAG 3 cut(s) 32, 516, 586
Hsp92II CATG 1 cut(s) 226
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 1 cut(s) 582
LmnI GCTCC 3 cut(s) 42, 302, 406
LpnPI CCDG 9 cut(s) 164, 186, 236, 254, 351, 357, 402, 432, 639
Lsp1109I GCAGC 1 cut(s) 725
LweI GCATC 2 cut(s) 367, 640
MaeI CTAG 2 cut(s) 509, 675
MaeIII GTNAC 3 cut(s) 35, 258, 522
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MboII GAAGA 2 cut(s) 62, 578
MfeI CAATTG 2 cut(s) 123, 734
MhlI GDGCHC 2 cut(s) 537, 606
MluCI AATT 5 cut(s) 76, 123, 574, 722, 734
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 3 cut(s) 217, 384, 452
MnlI CCTC 6 cut(s) 320, 373, 470, 589, 631, 639
Mph1103I ATGCAT 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 371
MunI CAATTG 2 cut(s) 123, 734
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 377, 691
NdeII GATC 1 cut(s) 582
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 298, 319
NmuCI GTSAC 1 cut(s) 522
NsiI ATGCAT 1 cut(s) 382
PctI GAATGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 344
PkrI GCNGC 2 cut(s) 121, 715
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PspN4I GGNNCC 2 cut(s) 298, 319
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 120, 714
Sau3AI GATC 1 cut(s) 582
ScaI AGTACT 1 cut(s) 507
SchI GAGTC 1 cut(s) 506
SduI GDGCHC 2 cut(s) 537, 606
SfaNI GCATC 2 cut(s) 367, 640
SmlI CTYRAG 2 cut(s) 311, 643
SmoI CTYRAG 2 cut(s) 311, 643
Sse9I AATT 5 cut(s) 76, 123, 574, 722, 734
SsiI CCGC 2 cut(s) 119, 335
SspMI CTAG 2 cut(s) 509, 675
TaaI ACNGT 4 cut(s) 92, 185, 386, 710
TasI AATT 5 cut(s) 76, 123, 574, 722, 734
TatI WGTACW 1 cut(s) 505
TauI GCSGC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 3 cut(s) 180, 188, 715
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 649
TspRI CASTG 3 cut(s) 180, 188, 715
Van91I CCANNNNNTGG 1 cut(s) 344
XapI RAATTY 2 cut(s) 76, 722
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 2 cut(s) 509, 675
ZrmI AGTACT 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.