Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005533

Physical Location & Seq

Genomic Coordinates Forward (+)

72446648 .. 72457306

Gene Structure 10659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGGATTCCCACTTCCATACTCTACTGCCTCCTCAGTTTTCCATGTTAGCTCTTCTTCTATGCATATCATTTCTGAGCGCAGAGTCTGCTATAATTCCAAGCATTACCACCGACAAGGAGGCCTTGATCTCATTCAAGGAGGCCTTGCTCGATGTCCCTCCATCCTTAACCTGGGACCAGAATTCATCCCCTTGCAGCAATTGGACCGGAGTTGTTTGCAGAAAACATGGTCAGAGTCAGAGAGTTGTTGTTCTTGATCTTTCAGGCTTGGGACTTACAGGGTCCATCAGCCCTCACATTGGTAACTTATCCTTCCTCCAATCTCTTCAACTTCAAAACAACAAGTTAACAGGAGCAATTCCTACTCAAGTTGTTAACCTTTTCCGCATGAGATCTCTGAACCTGAGCTCCAACACTATACAGGGTCCACTACCTTCAAACATGAGCCACTTGACTGAAATAGAAATGCTCGACTTGGCGGGGAATAACATAACAGGGAGGCTACCTGAAGAGATATCTAACCAAAGAAAACTTCGAGTCTTGAATCTGGGACGAAACAATTTCTTTGGTTCAATTCCTTCATCCATAAGCAACCTCTCATCCACGCTCACATATTTGAATTTGGGTACAAATAGCCTCAGTGGGATCATACCTAGTGAGTTGGGTTTACTTATCAATCTCAAGGAACTCGATCTTTCTGGTAACAAGTTCACTGGAACTGTTGCTCCCTCCATATACAACATTACTTCATTGGTTCTGTTCACTGTTGCTTCAAATCAACTTTGGGGGGAGATACCCAAAAATATTGATGAAACACTTCCAAATCTTTTATACTACCGGAACTGCTTTAATCTTATGACAGGGAAAATTCCAGCGTCTTTGCACAATATCACTAAGATTCGATCAATTCGAATGTCAAACAATTTTCTGGAAGGAACAGTTCCACCAGGGCTGGGAAACATGCCATTCCTTGAAATGTACAACATTGGCTTCAATCGGATCGTCAGTAAAGGCAGTGATGGTCTCAGTTTTATCACTTCCTTGACGAACAGCACCAACCTGCAATTTCTTGCTATCGACGACAATCAGTTAGAGGGAGTCATTCCAGAATCACTTGGCAATCTCTCAAAGGTTCTCTTAAAATTGTATATGGGAGGGAATCGGATTTATGGTAACATTCCTGCCTCAGTTGGTCATCTTAGTGGTTTAACTTTGTTAAATGTGAGCTACAATTCAATATCTGGTGAAATTCCCACTGAAATAGGCCAATTGGGAAACCTACAAATGCTTGGTTTAGCAGGAAATGAAATGTCTGGTCATATTCCAAACTCTTTAGGAAATCTCAAAAAGTTGAACGGTATTGATTTATCTGGGAATCACTTTGTCGGCCAAATACCCTCTTCTTTTTCAAACTTCCAGAGTTTGCTTTCCATGGACTTGTCAAACAATCAGCTCAACGGAACCATTTCCGGTGAAACTCTCAACCTTCCTAGTTTGAGCACCATTCTCAATCTGTCCAAAAACTTTCTAAGTGGACCTTTGCCTTCAGAAATTGGATCCCTTGAAAGTGTTGTCACTATAGACCTCTCTGACAATGCATTATCTGGAGATATCCCTGGATCAATAGGAAAGTGTAAAAGCTTGGAGAAATTGTTGATGTCAAGAAATAGAATTTCAGGTCCTATTCCCACTGGTCTAGGAGAATTGAGAGGCCTTGAGTTTCTAGACCTCTCCTCAAACCAGCTGTCCAGCTCCATTCCAGAGAATTTTCGAGACCTACATGCCCTTCGATACTTGAACCTATCATTTAATAACTTAGAAGGAGTGATTCCTAATGGTGGAGTATTTGTTACAAATTTCACTAATGTTCATCTTGAAGGCAACCCAAAAATTTGCCTCAAATTTCCATGTGAGAAGAATACTGATGGTCATCGAAGAAGAAAAATACTAGTCCTAGTTATGGTCATTACAACAGTCTTAGCAACCATATGTGTTATAGTGGGCTCTTTGGTCTATGCTAAGACAAGAAAAGGCTGCAAAGCAAAAATTACAGGAACTTGTGATAACGTAGTAGTAAAAGGGCAGCATCAGATGGTATCGTATGAAGAACTCCGTCGCTCAACAGGGAATTTGAACCCGGATAATTTGGTTGGAAGGGGGAGCTTTGGTTCTGTTTATAAAGGGTTTCTGAGAGACCAAGGAATTGAAGTTGCAGTCAAGGTGCTCGATATAAGAACAACAGGGTCTTGGAAGAGTTTCTTGGCAGAGTGTAATGCATTAAGGAGTGTGAGGCACCGAAATCTTGTCAAACTAATCACCTCCTGCTCAAGCTTAGACTGTAAGAACATGGAGTTTCTGGCCTTGGTTTATGAGTATCTGAGTAATGGGAGCTTGGAAGATTGGATTAAGGGCAAGAGAACAAATTCAGATGGAGACGGTTTGAACATTGTGGAGAGATTGAATGTGGCAATTGATGTTGCTTGTGGATTGGATTACCTCCATAATGATTGTGAAGTTCCAGTGGCTCACTGTGATTTGAAGCCAAGCAACATTCTTTTGGACAAAGACATGACTGCAAAGGTTGGAGATTTTGGGCTGGCAAGGTTACTGATACAAGAAACATCCACTCAACATTCTATTGGCTCCACCAATGTCCTCAAGGGTTCCATAGGATATATACCCCCAGAATATGGTTTTGGACAAAAACCCTCCACAGCTGGAGATGCATACAGTTTTGGAGTAATGTTGTTGGAGCTGTTTACTGGAAAAAGTCCAACCGATGAAAGCTTCACAGGAGAAGTTAACCTCGTTCAATGGGTGCAGTCATCTTTTCCCCACAACATTGCACAAGCACTAGACTCTGAGTTGTTACATTATGAGCACGACAAAGGCTCAAATCCCATCTCAGAAGAAGAACTGAATTGTTTGATCTCAGTTATCGAGGTTGGGCTCTCTTGCACCTTCACCTCTTCTGATGGACGGATTAGCATGAGGGATGCCCTTCACAAACTTGAAACTGCTAGAAAGACCCTTTTGAAGCTTGCTCAGTTTGACAGTGCAGACTGCAGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1025

Amino Acids

111.29

Weight (kDa)

6.19

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	37 - 73	5.5e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	95 - 183	4.9e-09	Leucine-rich repeat region
LRR_8	PF13855	106 - 164	9.3e-08	Leucine rich repeat
LRR_8	PF13855	176 - 237	1.8e-06	Leucine rich repeat
LRR_14	PF23598	391 - 454	5.7e-06	Leucine-rich repeat region
LRR_14	PF23598	467 - 606	4.8e-11	Leucine-rich repeat region
LRR_8	PF13855	569 - 606	9.8e-08	Leucine rich repeat
Pkinase	PF00069	715 - 930	1.6e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	715 - 929	6.3e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36850 FvH4_3g36850 FvH4_3g36850
malus_domestica	MD08G1090900.v1.1 MD15G1074900.v1.1 MD15G1075000.v1.1
prunus_persica	Prupe.1G427400_v2.0.a1 Prupe.1G427700_v2.0.a1 Prupe.1G427800_v2.0.a1 Prupe.1G427800_v2.0.a1 Prupe.1G427800_v2.0.a1
pyrus_communis	pycom15g06980 pycom15g06990
rosa_chinensis	RchiOBHm_Chr5g0066001 RchiOBHm_Chr5g0066021
rosa_laevigata	RLG00000035833 RLG00000035834
rosa_multiflora	Rmu_sc0001473.1_g000006 Rmu_sc0011576.1_g000012 Rmu_sc0011576.1_g000015
rosa_roxburghii	Rroxscaffold_1G00014980 Rroxscaffold_1G00015120
rosa_rugosa	Rorug05G0375800 Rorug05G0375900 Rorug05G0376000
rosa_samantha	Rh5AG434300 Rh5AG434500 Rh5CG472900
rosa_wichuraiana	Rw5G040690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2178
Acc36I	ACCTGC	1 cut(s)	1068
AccB1I	GGYRCC	1 cut(s)	2292
AccB7I	CCANNNNNTGG	1 cut(s)	2690
AciI	CCGC	2 cut(s)	385, 479
AclWI	GGATC	5 cut(s)	653, 1007, 1551, 1564, 1627
AcoI	YGGCCR	1 cut(s)	1387
AcuI	CTGAAG	2 cut(s)	528, 1530
AfaI	GTAC	2 cut(s)	628, 980
AfiI	CCNNNNNNNGG	6 cut(s)	171, 299, 953, 1838, 1960, 2690
AhlI	ACTAGT	1 cut(s)	1948
AjnI	CCWGG	3 cut(s)	170, 946, 1615
AjuI	GAANNNNNNNTTGG	6 cut(s)	516, 548, 2243, 2275, 2679, 2711
AloI	GAACNNNNNNTCC	6 cut(s)	392, 424, 709, 741, 2152, 2184
Alw21I	GWGCWC	4 cut(s)	410, 1502, 2226, 2883
Alw26I	GTCTC	4 cut(s)	1028, 1767, 2187, 2427
AlwI	GGATC	5 cut(s)	653, 1007, 1551, 1564, 1627
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	6 cut(s)	120, 141, 1264, 1387, 1711, 2358
ApeKI	GCWGC	3 cut(s)	195, 2034, 2083
ArsI	GACNNNNNNTTYG	2 cut(s)	1730, 1762
Asp700I	GAANNNNTTC	4 cut(s)	816, 1465, 2255, 2422
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
AsuC2I	CCSGG	1 cut(s)	2138
AsuHPI	GGTGA	4 cut(s)	1256, 1484, 2308, 2956
AsuII	TTCGAA	1 cut(s)	910
AvaII	GGWCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
BamHI	GGATCC	1 cut(s)	1556
BanI	GGYRCC	1 cut(s)	2292
BanII	GRGCYC	3 cut(s)	410, 2006, 2952
Bbv12I	GWGCWC	4 cut(s)	410, 1502, 2226, 2883
BbvI	GCAGC	3 cut(s)	207, 2021, 2095
BccI	CCATC	8 cut(s)	169, 293, 1013, 1919, 2086, 2423, 2909, 2969
BciT130I	CCWGG	3 cut(s)	172, 948, 1617
BcnI	CCSGG	1 cut(s)	2138
BcoDI	GTCTC	4 cut(s)	1028, 1767, 2187, 2427
BcuI	ACTAGT	1 cut(s)	1948
BfaI	CTAG	8 cut(s)	654, 1491, 1697, 1724, 1949, 1955, 2855, 3021
BfmI	CTRYAG	2 cut(s)	1578, 3064
BfuAI	ACCTGC	1 cut(s)	1068
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	3 cut(s)	196, 2035, 2084
BlsI	GCNGC	3 cut(s)	197, 2036, 2085
Bme1390I	CCNGG	4 cut(s)	172, 948, 1617, 2138
Bme18I	GGWCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
BmgT120I	GGNCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
BmiI	GGNNCC	8 cut(s)	176, 283, 426, 1462, 1558, 2294, 2644, 2665
BmrFI	CCNGG	4 cut(s)	172, 948, 1617, 2138
BmsI	GCATC	3 cut(s)	2095, 2713, 2986
BpmI	CTGGAG	2 cut(s)	1626, 2739
Bpu10I	CCTNAGC	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	910
BpuEI	CTTGAG	5 cut(s)	351, 665, 1736, 2311, 2642
BpuMI	CCSGG	1 cut(s)	2138
BsaBI	GATNNNNATC	1 cut(s)	1929
BsaI	GGTCTC	3 cut(s)	1028, 1767, 2187
BsaJI	CCNNGG	6 cut(s)	171, 947, 1431, 1615, 2197, 2361
BsaWI	WCCGGW	3 cut(s)	206, 837, 1469
Bsc4I	CCNNNNNNNGG	6 cut(s)	171, 299, 953, 1838, 1960, 2690
Bse1I	ACTGG	4 cut(s)	718, 1696, 2519, 2767
Bse3DI	GCAATG	1 cut(s)	2841
Bse8I	GATNNNNATC	1 cut(s)	1929
BseBI	CCWGG	3 cut(s)	172, 948, 1617
BseDI	CCNNGG	6 cut(s)	171, 947, 1431, 1615, 2197, 2361
BseGI	GGATG	6 cut(s)	161, 185, 581, 599, 2621, 3001
BseJI	GATNNNNATC	1 cut(s)	1929
BseLI	CCNNNNNNNGG	6 cut(s)	171, 299, 953, 1838, 1960, 2690
BseMI	GCAATG	1 cut(s)	2841
BseNI	ACTGG	4 cut(s)	718, 1696, 2519, 2767
BseRI	GAGGAG	2 cut(s)	21, 1723
BseXI	GCAGC	3 cut(s)	207, 2021, 2095
BseYI	CCCAGC	1 cut(s)	952
BsgI	GTGCAG	1 cut(s)	2840
BshFI	GGCC	6 cut(s)	122, 143, 1266, 1389, 1713, 2360
BshNI	GGYRCC	1 cut(s)	2292
BsiHKAI	GWGCWC	4 cut(s)	410, 1502, 2226, 2883
BsiSI	CCGG	4 cut(s)	207, 838, 1470, 2138
BslFI	GGGAC	4 cut(s)	140, 188, 285, 564
BslI	CCNNNNNNNGG	6 cut(s)	171, 299, 953, 1838, 1960, 2690
BsmAI	GTCTC	4 cut(s)	1028, 1767, 2187, 2427
BsmBI	CGTCTC	1 cut(s)	2427
BsmFI	GGGAC	4 cut(s)	140, 188, 285, 564
BsnI	GGCC	6 cut(s)	122, 143, 1266, 1389, 1713, 2360
Bso31I	GGTCTC	3 cut(s)	1028, 1767, 2187
Bsp119I	TTCGAA	1 cut(s)	910
Bsp1286I	GDGCHC	6 cut(s)	410, 1502, 2006, 2226, 2883, 2952
Bsp1407I	TGTACA	1 cut(s)	978
Bsp19I	CCATGG	1 cut(s)	1431
BspACI	CCGC	2 cut(s)	385, 479
BspANI	GGCC	6 cut(s)	122, 143, 1266, 1389, 1713, 2360
BspLI	GGNNCC	8 cut(s)	176, 283, 426, 1462, 1558, 2294, 2644, 2665
BspMAI	CTGCAG	1 cut(s)	3068
BspMI	ACCTGC	1 cut(s)	1068
BspPI	GGATC	5 cut(s)	653, 1007, 1551, 1564, 1627
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	910
BspT107I	GGYRCC	1 cut(s)	2292
BspTNI	GGTCTC	3 cut(s)	1028, 1767, 2187
BsrDI	GCAATG	1 cut(s)	2841
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	4 cut(s)	718, 1696, 2519, 2767
BssECI	CCNNGG	6 cut(s)	171, 947, 1431, 1615, 2197, 2361
BssT1I	CCWWGG	3 cut(s)	1431, 2197, 2361
Bst2UI	CCWGG	3 cut(s)	172, 948, 1617
Bst6I	CTCTTC	6 cut(s)	57, 330, 504, 1405, 2246, 2974
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	978
BstBI	TTCGAA	1 cut(s)	910
BstC8I	GCNNGC	2 cut(s)	2598, 3042
BstDSI	CCRYGG	1 cut(s)	1431
BstF5I	GGATG	6 cut(s)	161, 185, 581, 599, 2621, 3001
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	4 cut(s)	1028, 1767, 2187, 2427
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 2723
BstNI	CCWGG	3 cut(s)	172, 948, 1617
BstNSI	RCATGY	2 cut(s)	964, 1784
BstSCI	CCNGG	4 cut(s)	170, 946, 1615, 2136
BstSFI	CTRYAG	2 cut(s)	1578, 3064
BstV1I	GCAGC	3 cut(s)	207, 2021, 2095
BstX2I	RGATCY	2 cut(s)	392, 1556
BstYI	RGATCY	2 cut(s)	392, 1556
BsuRI	GGCC	6 cut(s)	122, 143, 1266, 1389, 1713, 2360
BtgI	CCRYGG	1 cut(s)	1431
BtsCI	GGATG	6 cut(s)	161, 185, 581, 599, 2621, 3001
BtsI	GCAGTG	1 cut(s)	1021
BtsIMutI	CAGTG	9 cut(s)	646, 711, 762, 1021, 1254, 1689, 2526, 2527, 3061
BveI	ACCTGC	1 cut(s)	1068
Cac8I	GCNNGC	2 cut(s)	2598, 3042
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
CseI	GACGC	1 cut(s)	864
Csp6I	GTAC	2 cut(s)	627, 979
CviQI	GTAC	2 cut(s)	627, 979
EaeI	YGGCCR	1 cut(s)	1387
Eam1104I	CTCTTC	6 cut(s)	57, 330, 504, 1405, 2246, 2974
EarI	CTCTTC	6 cut(s)	57, 330, 504, 1405, 2246, 2974
Ecl136II	GAGCTC	1 cut(s)	408
Eco130I	CCWWGG	3 cut(s)	1431, 2197, 2361
Eco147I	AGGCCT	3 cut(s)	122, 143, 1713
Eco24I	GRGCYC	3 cut(s)	410, 2006, 2952
Eco31I	GGTCTC	3 cut(s)	1028, 1767, 2187
Eco32I	GATATC	2 cut(s)	516, 1612
Eco47I	GGWCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
Eco53kI	GAGCTC	1 cut(s)	408
Eco57I	CTGAAG	2 cut(s)	528, 1530
EcoICRI	GAGCTC	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	1679
EcoRI	GAATTC	1 cut(s)	181
EcoRII	CCWGG	3 cut(s)	170, 946, 1615
EcoRV	GATATC	2 cut(s)	516, 1612
EcoT14I	CCWWGG	3 cut(s)	1431, 2197, 2361
EcoT22I	ATGCAT	4 cut(s)	65, 1600, 2278, 2728
EcoT38I	GRGCYC	3 cut(s)	410, 2006, 2952
ErhI	CCWWGG	3 cut(s)	1431, 2197, 2361
Esp3I	CGTCTC	1 cut(s)	2427
FaqI	GGGAC	4 cut(s)	140, 188, 285, 564
FauI	CCCGC	1 cut(s)	472
FauNDI	CATATG	1 cut(s)	1988
Fnu4HI	GCNGC	3 cut(s)	196, 2035, 2084
FokI	GGATG	6 cut(s)	148, 172, 568, 586, 2608, 3008
FriOI	GRGCYC	3 cut(s)	410, 2006, 2952
Fsp4HI	GCNGC	3 cut(s)	196, 2035, 2084
FspBI	CTAG	8 cut(s)	654, 1491, 1697, 1724, 1949, 1955, 2855, 3021
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	196, 2035, 2084
GsaI	CCCAGC	1 cut(s)	956
GsuI	CTGGAG	2 cut(s)	1626, 2739
HaeIII	GGCC	6 cut(s)	122, 143, 1266, 1389, 1713, 2360
HapII	CCGG	4 cut(s)	207, 838, 1470, 2138
HgaI	GACGC	1 cut(s)	864
HhaI	GCGC	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	3 cut(s)	348, 376, 2803
HindII	GTYRAC	3 cut(s)	348, 376, 2803
HindIII	AAGCTT	4 cut(s)	1639, 2329, 2785, 3038
HpaI	GTTAAC	3 cut(s)	348, 376, 2803
HpaII	CCGG	4 cut(s)	207, 838, 1470, 2138
HphI	GGTGA	4 cut(s)	1256, 1484, 2308, 2956
Hpy166II	GTNNAC	9 cut(s)	348, 376, 428, 668, 711, 762, 1535, 2760, 2803
Hpy8I	GTNNAC	9 cut(s)	348, 376, 428, 668, 711, 762, 1535, 2760, 2803
Hpy99I	CGWCG	2 cut(s)	1082, 2118
HpyCH4IV	ACGT	1 cut(s)	2067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 2723
HpySE526I	ACGT	1 cut(s)	2067
HspAI	GCGC	1 cut(s)	78
KspAI	GTTAAC	3 cut(s)	348, 376, 2803
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	8 cut(s)	353, 413, 730, 1757, 2160, 2388, 2648, 2752
Lsp1109I	GCAGC	3 cut(s)	207, 2021, 2095
LweI	GCATC	3 cut(s)	2095, 2713, 2986
MaeI	CTAG	8 cut(s)	654, 1491, 1697, 1724, 1949, 1955, 2855, 3021
MaeII	ACGT	1 cut(s)	2067
MaeIII	GTNAC	7 cut(s)	302, 701, 1172, 1573, 1849, 2604, 2868
MfeI	CAATTG	3 cut(s)	199, 1268, 2469
MflI	RGATCY	2 cut(s)	392, 1556
MhlI	GDGCHC	6 cut(s)	410, 1502, 2006, 2226, 2883, 2952
MlyI	GAGTC	5 cut(s)	92, 244, 546, 1107, 2852
MmeI	TCCRAC	5 cut(s)	435, 2131, 2563, 2730, 2798
Mph1103I	ATGCAT	4 cut(s)	65, 1600, 2278, 2728
MroXI	GAANNNNTTC	4 cut(s)	816, 1465, 2255, 2422
MslI	CAYNNNNRTG	1 cut(s)	1200
MspA1I	CMGCKG	2 cut(s)	1744, 2717
MspI	CCGG	4 cut(s)	207, 838, 1470, 2138
MspR9I	CCNGG	4 cut(s)	172, 948, 1617, 2138
MunI	CAATTG	3 cut(s)	199, 1268, 2469
MvaI	CCWGG	3 cut(s)	172, 948, 1617
MwoI	GCNNNNNNNGC	2 cut(s)	86, 2723
NciI	CCSGG	1 cut(s)	2138
NcoI	CCATGG	1 cut(s)	1431
NdeI	CATATG	1 cut(s)	1988
NlaIV	GGNNCC	8 cut(s)	176, 283, 426, 1462, 1558, 2294, 2644, 2665
NmuCI	GTSAC	1 cut(s)	1573
NsiI	ATGCAT	4 cut(s)	65, 1600, 2278, 2728
NspI	RCATGY	2 cut(s)	964, 1784
NspV	TTCGAA	1 cut(s)	910
PceI	AGGCCT	3 cut(s)	122, 143, 1713
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	907
PdmI	GAANNNNTTC	4 cut(s)	816, 1465, 2255, 2422
PfeI	GAWTC	7 cut(s)	5, 544, 898, 1109, 1159, 1375, 1828
PflMI	CCANNNNNTGG	1 cut(s)	2690
PkrI	GCNGC	3 cut(s)	197, 2036, 2085
PleI	GAGTC	5 cut(s)	91, 243, 545, 1106, 2852
PpsI	GAGTC	5 cut(s)	91, 243, 545, 1106, 2852
PpuMI	RGGWCCY	1 cut(s)	1679
PsiI	TTATAA	1 cut(s)	2178
Psp124BI	GAGCTC	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	1679
Psp6I	CCWGG	3 cut(s)	170, 946, 1615
PspFI	CCCAGC	1 cut(s)	952
PspGI	CCWGG	3 cut(s)	170, 946, 1615
PspN4I	GGNNCC	8 cut(s)	176, 283, 426, 1462, 1558, 2294, 2644, 2665
PspPI	GGNCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
PspPPI	RGGWCCY	1 cut(s)	1679
PstI	CTGCAG	1 cut(s)	3068
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	392, 1556
PvuII	CAGCTG	2 cut(s)	1744, 2717
RsaI	GTAC	2 cut(s)	628, 980
RsaNI	GTAC	2 cut(s)	627, 979
RseI	CAYNNNNRTG	1 cut(s)	1200
SacI	GAGCTC	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	57
SatI	GCNGC	3 cut(s)	196, 2035, 2084
Sau96I	GGNCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
SchI	GAGTC	5 cut(s)	92, 244, 546, 1107, 2852
ScrFI	CCNGG	4 cut(s)	172, 948, 1617, 2138
SduI	GDGCHC	6 cut(s)	410, 1502, 2006, 2226, 2883, 2952
SfaNI	GCATC	3 cut(s)	2095, 2713, 2986
SfcI	CTRYAG	2 cut(s)	1578, 3064
SfuI	TTCGAA	1 cut(s)	910
SinI	GGWCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
SmiMI	CAYNNNNRTG	1 cut(s)	1200
SmlI	CTYRAG	5 cut(s)	366, 680, 1715, 2326, 2657
SmoI	CTYRAG	5 cut(s)	366, 680, 1715, 2326, 2657
SpeI	ACTAGT	1 cut(s)	1948
SseBI	AGGCCT	3 cut(s)	122, 143, 1713
SsiI	CCGC	2 cut(s)	385, 479
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	8 cut(s)	654, 1491, 1697, 1724, 1949, 1955, 2855, 3021
SstI	GAGCTC	1 cut(s)	410
StuI	AGGCCT	3 cut(s)	122, 143, 1713
StyD4I	CCNGG	4 cut(s)	170, 946, 1615, 2136
StyI	CCWWGG	3 cut(s)	1431, 2197, 2361
TaiI	ACGT	1 cut(s)	2070
TatI	WGTACW	1 cut(s)	978
TfiI	GAWTC	7 cut(s)	5, 544, 898, 1109, 1159, 1375, 1828
TscAI	CASTG	9 cut(s)	646, 718, 769, 1021, 1261, 1696, 2526, 2534, 3061
TseFI	GTSAC	1 cut(s)	1573
TseI	GCWGC	3 cut(s)	195, 2034, 2083
Tsp45I	GTSAC	1 cut(s)	1573
TspDTI	ATGAA	8 cut(s)	174, 570, 738, 825, 1320, 1859, 2118, 2796
TspGWI	ACGGA	3 cut(s)	1473, 2102, 2995
TspRI	CASTG	9 cut(s)	646, 718, 769, 1021, 1261, 1696, 2526, 2534, 3061
Van91I	CCANNNNNTGG	1 cut(s)	2690
VpaK11BI	GGWCC	6 cut(s)	175, 204, 282, 425, 1535, 1679
XbaI	TCTAGA	1 cut(s)	1723
XceI	RCATGY	2 cut(s)	964, 1784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmnI	GAANNNNTTC	4 cut(s)	816, 1465, 2255, 2422
XspI	CTAG	8 cut(s)	654, 1491, 1697, 1724, 1949, 1955, 2855, 3021
Zsp2I	ATGCAT	4 cut(s)	65, 1600, 2278, 2728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.