Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005533

Physical Location & Seq

Genomic Coordinates Forward (+)

50773584 .. 50775660

Gene Structure 2077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0376000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGACAGAATTGAGCAAGTATTTGGATGAAGCAAGGCTAGAAAGAAAGCAAGAGTTGGATGTACTTTCTTGGTGGAAAATGGAGCAAATCCGATATCCTATTCTTTTTCATCTAGCTCGTGATGTGCTCACAATTCCCATTTCTACCGTTGCATCTGAATCGGCCTTTAGCATTGGCGGGAGAGTTTTAGATCAATACCGCAGCTCACTGTTGCCTGACACAGTTCAAGCTCTGCTTTGTACTCGAGATTGGATTTTTGGTAACAAAGAAAAAGAGCGTGCCGAATTGGAGGATCTTACTGAAGACGTATTTGATTTGACATTGCAAGATAGATCTGGAGAAGGAGAAAGTCGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

120

Amino Acids

13.97

Weight (kDa)

4.75

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimer_Tnp_hAT	PF05699	4 - 86	3.6e-33	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36850 FvH4_3g36850 FvH4_3g36850
malus_domestica	MD08G1090900.v1.1 MD15G1074900.v1.1 MD15G1075000.v1.1
prunus_persica	Prupe.1G427400_v2.0.a1 Prupe.1G427700_v2.0.a1 Prupe.1G427800_v2.0.a1 Prupe.1G427800_v2.0.a1 Prupe.1G427800_v2.0.a1
pyrus_communis	pycom15g06980 pycom15g06990
rosa_chinensis	RchiOBHm_Chr5g0066001 RchiOBHm_Chr5g0066021
rosa_laevigata	RLG00000035833 RLG00000035834
rosa_multiflora	Rmu_sc0001473.1_g000006 Rmu_sc0011576.1_g000012 Rmu_sc0011576.1_g000015
rosa_roxburghii	Rroxscaffold_1G00014980 Rroxscaffold_1G00015120
rosa_rugosa	Rorug05G0375800 Rorug05G0375900 Rorug05G0376000
rosa_samantha	Rh5AG434300 Rh5AG434500 Rh5CG472900
rosa_wichuraiana	Rw5G040690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	180, 202
AclWI	GGATC	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	66, 244
AgsI	TTSAA	1 cut(s)	230
AluBI	AGCT	3 cut(s)	119, 207, 233
AluI	AGCT	3 cut(s)	119, 207, 233
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	246
BauI	CACGAG	1 cut(s)	120
BbsI	GAAGAC	2 cut(s)	11, 312
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	216
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BfaI	CTAG	2 cut(s)	41, 116
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	11, 312
BpmI	CTGGAG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	323
BseGI	GGATG	2 cut(s)	34, 67
BseMI	GCAATG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	246
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	193, 295, 335
BspACI	CCGC	2 cut(s)	180, 202
BspANI	GGCC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	323
BssMI	GATC	3 cut(s)	193, 295, 335
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	151, 213, 226
BstC8I	GCNNGC	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	34, 67
BstKTI	GATC	3 cut(s)	196, 298, 338
BstMBI	GATC	3 cut(s)	193, 295, 335
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	2 cut(s)	11, 312
BstX2I	RGATCY	2 cut(s)	295, 335
BstYI	RGATCY	2 cut(s)	295, 335
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	34, 67
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	65, 243
CviJI	RGCY	5 cut(s)	40, 119, 167, 207, 233
CviKI_1	RGCY	5 cut(s)	40, 119, 167, 207, 233
CviQI	GTAC	2 cut(s)	65, 243
DpnI	GATC	3 cut(s)	195, 297, 337
DpnII	GATC	3 cut(s)	193, 295, 335
Eco32I	GATATC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	98
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	2 cut(s)	41, 74
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	2 cut(s)	41, 116
GluI	GCNGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	167
HinfI	GANTC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	95, 160
Hpy188III	TCNNGA	3 cut(s)	122, 248, 339
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	3 cut(s)	151, 213, 226
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	155, 328
HpySE526I	ACGT	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	193, 295, 335
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	231, 324
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	2 cut(s)	41, 116
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	3 cut(s)	195, 297, 337
MboI	GATC	3 cut(s)	193, 295, 335
MboII	GAAGA	2 cut(s)	16, 317
MflI	RGATCY	2 cut(s)	295, 335
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	4 cut(s)	11, 135, 287, 358
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	286
MseI	TTAA	1 cut(s)	361
NdeII	GATC	3 cut(s)	193, 295, 335
PaeR7I	CTCGAG	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	295, 335
RsaI	GTAC	2 cut(s)	66, 244
RsaNI	GTAC	2 cut(s)	65, 243
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	3 cut(s)	193, 295, 335
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	4 cut(s)	121, 209, 235, 312
SfaNI	GCATC	1 cut(s)	164
Sfr274I	CTCGAG	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	4 cut(s)	11, 135, 287, 358
SsiI	CCGC	2 cut(s)	180, 202
SspMI	CTAG	2 cut(s)	41, 116
TaaI	ACNGT	3 cut(s)	151, 213, 226
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	247
TasI	AATT	4 cut(s)	11, 135, 287, 358
TatI	WGTACW	2 cut(s)	64, 242
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	17, 45, 101
TspRI	CASTG	1 cut(s)	216
XhoI	CTCGAG	1 cut(s)	246
XspI	CTAG	2 cut(s)	41, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.