Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005533

Physical Location & Seq

Genomic Coordinates Forward (+)

50732457 .. 50755439

Gene Structure 22983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0375900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGGCCAGCTATGCTGCATGGGATGATGACATTGAAAGGTCTGATAGAGAATTATCAAAGCACCCTGGTGTACCAATAGTCTACGCAATAATAATGGTCGTTTTCCCACCATTACAACTACTGGATAATTCCGGTCATGATGGAATATTAGGCGTATCATGTATGTTGTATCTGTTCCTGGATCCTCTGTTTCTGTATGCTCCTCTTATCAACGAGCAGACCAAGTGTGTCGTGTTGGACAACAGAGTGAAGATAGCAGCTCTTGTTCTTCGATCATTGGGAGATGTTTGTCACCTAATCAGAATATATCTTCACATTAAGGATGGATGGTGGAAGTCCCCCTCTCTTAGGAAAAAGCTGAGGCTAGCAAATGACACGGTGTCTATTCTTCCTATTCCACAAACCATTGGCGATAGGAGAGACAGGAATCCAAAATGGTTGTCAATCGTCGTCGATTCAAAATGGTCATCAATTGTCGTCAATATGATTGGGTACATTATTGCCAGCCATATATTCGGAGCATTTTGGTATTTTTTCTCCATCCAAAGAGAGATACAGTGTTGGGAACATGCTTGTAGAATGGAAAATGGATGTGAATTTAGTACTTCATGCGTTCGAAATACACACAGAAATCTCCAATTTATAAATGAGAAGTGCCCTATAAATCCACCAAATAAACAAGTATTCGATTTTGGCGTATTTCAAGATGCTTTACAATCCGACATGCCAAGATCAACCAATTTTTCACAAAAGTTCTTGCAGTGTTTATCATGGGGCATACGAAATATGAGTTCTTTTGGTTCAAACCTCAATGCTACCAGTGCAAATGGAGGGGAAAACCTGCTTGTGGTTGTCTTTTCGATATGTGGCTTGGGACTGTTTATGTATCTCTTGGGGCATGTGCAGACATTTATGCAGAAAGTTAGCAAATCATGTACTATCCGACAGAAGATGAAAATGACTAATATACGATCCATACTAAACAAATATGGCCTGTCTGATGAGAATCATGAGACGGAGAGGAAAATCAAGCTTGCGGTAAAAGATAAACTTGAAGAAGATGACAGTCATATTGTGGAGGATATGTTTTCGATTCTTTCCTTAGGAGAAGCTGAAAATTTAGCTATGGAGATCAAATGCAATCTCTTCATGGATAAGCTCAAGAAAAAAGTTAGCAAATCATGTACTATCCGACAGAAGATGAAAATGACTAATATACGATCCATACTAAACAAATATGGCCTGTCTGATGAGAATCATGAGACGGAGAGGAAAATCAAGCTTGCGGTAAAAGATAAACTTGAAGAAGATGACAGTCATATTGTGGAGGATATGTTTTCGATTCTTTCCTTAGGAGAAGCTGAAAATTTAGCTATGGAGATCAAATGCAATCTCTTCATGGATAAGCTCAAGAAAGTCGATGGGCTTAGAGATAAAGGGAAAGAAGTTTTGAAAAAAATCTGTGAGCATTTTGAGCCAATGATCTACAGTAGGGGATGCTACATTATTCGAGAGGGGGAGCCACTGGATATGATGTTCTTCGTCACACGGGGCAGTGTACTCACCTATGCGACTAATAATGGTGGATCAAATGGTTCTTCAGGTACTATTCAACTTGAGATAGAGAAAGATGGTTTGTATGGTAAAGAGCTTCTAACTTGGGCAGAAGGATGTTCTAGCAAATTGTCCAACTTACCGATCTCTACCATAACTGTCAAGTCCCACAACAAAGTTGAAGTGTTTGCTCTCCTCGCCACCGATTTACAGCGTGTTGTCTCTAATTTTCCGAGTCAATTCAACATGGGCAATATCCTCAACATAGCTGTCGATAATGAAATGGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

615

Amino Acids

69.89

Weight (kDa)

7.49

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36850 FvH4_3g36850 FvH4_3g36850
malus_domestica	MD08G1090900.v1.1 MD15G1074900.v1.1 MD15G1075000.v1.1
prunus_persica	Prupe.1G427400_v2.0.a1 Prupe.1G427700_v2.0.a1 Prupe.1G427800_v2.0.a1 Prupe.1G427800_v2.0.a1 Prupe.1G427800_v2.0.a1
pyrus_communis	pycom15g06980 pycom15g06990
rosa_chinensis	RchiOBHm_Chr5g0066001 RchiOBHm_Chr5g0066021
rosa_laevigata	RLG00000035833 RLG00000035834
rosa_multiflora	Rmu_sc0001473.1_g000006 Rmu_sc0011576.1_g000012 Rmu_sc0011576.1_g000015
rosa_roxburghii	Rroxscaffold_1G00014980 Rroxscaffold_1G00015120
rosa_rugosa	Rorug05G0375800 Rorug05G0375900 Rorug05G0376000
rosa_samantha	Rh5AG434300 Rh5AG434500 Rh5CG472900
rosa_wichuraiana	Rw5G040690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	849
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	2 cut(s)	1037, 1286
AclWI	GGATC	5 cut(s)	176, 189, 966, 1215, 1594
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	596, 1117, 1366
AcuI	CTGAAG	1 cut(s)	1584
AfaI	GTAC	7 cut(s)	72, 494, 604, 937, 1186, 1560, 1606
AfiI	CCNNNNNNNGG	2 cut(s)	348, 847
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	64, 177
AleI	CACNNNNGTG	1 cut(s)	66
AloI	GAACNNNNNNTCC	2 cut(s)	1520, 1552
Alw26I	GTCTC	4 cut(s)	414, 1007, 1256, 1780
AlwI	GGATC	5 cut(s)	176, 189, 966, 1215, 1594
AoxI	GGCC	3 cut(s)	3, 991, 1240
ApeKI	GCWGC	2 cut(s)	14, 257
ApoI	RAATTY	3 cut(s)	596, 1117, 1366
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsuHPI	GGTGA	2 cut(s)	284, 1555
AsuII	TTCGAA	1 cut(s)	616
AsuNHI	GCTAGC	1 cut(s)	364
AxyI	CCTNAGG	2 cut(s)	1102, 1351
BaeGI	GKGCMC	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	6 cut(s)	134, 317, 321, 548, 1415, 1625
BciT130I	CCWGG	2 cut(s)	66, 179
BcoDI	GTCTC	4 cut(s)	414, 1007, 1256, 1780
BfaI	CTAG	2 cut(s)	365, 1677
BfmI	CTRYAG	1 cut(s)	1486
BfuAI	ACCTGC	1 cut(s)	849
BisI	GCNGC	2 cut(s)	15, 258
BlsI	GCNGC	2 cut(s)	16, 259
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	2 cut(s)	66, 179
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	183, 1521
BmrFI	CCNGG	2 cut(s)	66, 179
BmsI	GCATC	2 cut(s)	697, 1487
BmtI	GCTAGC	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	616
BpuEI	CTTGAG	3 cut(s)	1145, 1394, 1637
BsaBI	GATNNNNATC	2 cut(s)	1005, 1254
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	4 cut(s)	1070, 1100, 1319, 1349
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 847
Bse1I	ACTGG	3 cut(s)	126, 819, 1530
Bse21I	CCTNAGG	2 cut(s)	1102, 1351
Bse8I	GATNNNNATC	2 cut(s)	1005, 1254
BseBI	CCWGG	2 cut(s)	66, 179
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	7 cut(s)	28, 328, 332, 540, 596, 1502, 1676
BseJI	GATNNNNATC	2 cut(s)	1005, 1254
BseLI	CCNNNNNNNGG	2 cut(s)	348, 847
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	3 cut(s)	126, 819, 1530
BseRI	GAGGAG	2 cut(s)	192, 1739
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	923
BshFI	GGCC	3 cut(s)	5, 993, 1242
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	3 cut(s)	322, 888, 1705
BslI	CCNNNNNNNGG	2 cut(s)	348, 847
BsmAI	GTCTC	4 cut(s)	414, 1007, 1256, 1780
BsmBI	CGTCTC	2 cut(s)	1007, 1256
BsmFI	GGGAC	3 cut(s)	322, 888, 1705
BsnI	GGCC	3 cut(s)	5, 993, 1242
Bsp119I	TTCGAA	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	659
BspACI	CCGC	2 cut(s)	1037, 1286
BspANI	GGCC	3 cut(s)	5, 993, 1242
BspCNI	CTCAG	1 cut(s)	351
BspHI	TCATGA	3 cut(s)	136, 1009, 1258
BspLI	GGNNCC	2 cut(s)	183, 1521
BspMI	ACCTGC	1 cut(s)	849
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	5 cut(s)	176, 189, 966, 1215, 1594
BspT104I	TTCGAA	1 cut(s)	616
BsrI	ACTGG	3 cut(s)	126, 819, 1530
BssECI	CCNNGG	1 cut(s)	64
Bst2UI	CCWGG	2 cut(s)	66, 179
Bst4CI	ACNGT	7 cut(s)	379, 558, 879, 1067, 1316, 1490, 1714
Bst6I	CTCTTC	2 cut(s)	1151, 1400
BstBI	TTCGAA	1 cut(s)	616
BstC8I	GCNNGC	5 cut(s)	7, 366, 505, 1035, 1284
BstDEI	CTNAG	5 cut(s)	347, 359, 1102, 1351, 1427
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstF5I	GGATG	7 cut(s)	28, 328, 332, 540, 596, 1502, 1676
BstMAI	GTCTC	4 cut(s)	414, 1007, 1256, 1780
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 821, 1474, 1751
BstNI	CCWGG	2 cut(s)	66, 179
BstNSI	RCATGY	3 cut(s)	572, 727, 902
BstSCI	CCNGG	2 cut(s)	64, 177
BstSFI	CTRYAG	1 cut(s)	1486
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu36I	CCTNAGG	2 cut(s)	1102, 1351
BsuRI	GGCC	3 cut(s)	5, 993, 1242
BtsCI	GGATG	7 cut(s)	28, 328, 332, 540, 596, 1502, 1676
BtsI	GCAGTG	2 cut(s)	767, 1561
BtsIMutI	CAGTG	5 cut(s)	563, 767, 826, 1523, 1561
BveI	ACCTGC	1 cut(s)	849
Cac8I	GCNNGC	5 cut(s)	7, 366, 505, 1035, 1284
CciI	TCATGA	3 cut(s)	136, 1009, 1258
Csp6I	GTAC	7 cut(s)	71, 493, 603, 936, 1185, 1559, 1605
CviQI	GTAC	7 cut(s)	71, 493, 603, 936, 1185, 1559, 1605
DdeI	CTNAG	5 cut(s)	347, 359, 1102, 1351, 1427
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	1151, 1400
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	2 cut(s)	1151, 1400
Eco57I	CTGAAG	1 cut(s)	1584
Eco81I	CCTNAGG	2 cut(s)	1102, 1351
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	64, 177
Esp3I	CGTCTC	2 cut(s)	1007, 1256
FalI	AAGNNNNNCTT	4 cut(s)	1035, 1067, 1284, 1316
FaqI	GGGAC	3 cut(s)	322, 888, 1705
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	15, 258
FokI	GGATG	7 cut(s)	35, 335, 339, 527, 603, 1509, 1683
Fsp4HI	GCNGC	2 cut(s)	15, 258
FspBI	CTAG	2 cut(s)	365, 1677
GluI	GCNGC	2 cut(s)	15, 258
HaeIII	GGCC	3 cut(s)	5, 993, 1242
HapII	CCGG	1 cut(s)	132
HindIII	AAGCTT	2 cut(s)	1031, 1280
HinfI	GANTC	7 cut(s)	427, 455, 1006, 1093, 1255, 1342, 1789
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	284, 1555
Hpy166II	GTNNAC	4 cut(s)	71, 82, 1559, 1843
Hpy188I	TCNGA	9 cut(s)	43, 302, 518, 721, 944, 1000, 1193, 1249, 1788
Hpy188III	TCNNGA	7 cut(s)	137, 704, 1010, 1162, 1259, 1411, 1511
Hpy8I	GTNNAC	4 cut(s)	71, 82, 1559, 1843
Hpy99I	CGWCG	2 cut(s)	452, 455
HpyAV	CCTTC	1 cut(s)	1661
HpyCH4III	ACNGT	7 cut(s)	379, 558, 879, 1067, 1316, 1490, 1714
HpyCH4V	TGCA	7 cut(s)	17, 760, 824, 904, 916, 1140, 1389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 821, 1474, 1751
HpyF3I	CTNAG	5 cut(s)	347, 359, 1102, 1351, 1427
LmnI	GCTCC	3 cut(s)	205, 518, 1519
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	2 cut(s)	697, 1487
MaeI	CTAG	2 cut(s)	365, 1677
MaeIII	GTNAC	2 cut(s)	290, 1543
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1798
MmeI	TCCRAC	5 cut(s)	216, 744, 967, 1216, 1713
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	66, 179
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	2 cut(s)	66, 179
MwoI	GCNNNNNNNGC	4 cut(s)	11, 821, 1474, 1751
NheI	GCTAGC	1 cut(s)	364
NlaIV	GGNNCC	2 cut(s)	183, 1521
NmuCI	GTSAC	2 cut(s)	290, 1543
NspI	RCATGY	3 cut(s)	572, 727, 902
NspV	TTCGAA	1 cut(s)	616
OliI	CACNNNNGTG	1 cut(s)	66
PagI	TCATGA	3 cut(s)	136, 1009, 1258
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PfeI	GAWTC	6 cut(s)	427, 455, 1006, 1093, 1255, 1342
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	16, 259
PleI	GAGTC	1 cut(s)	1797
PpsI	GAGTC	1 cut(s)	1797
PsiI	TTATAA	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	64, 177
PspGI	CCWGG	2 cut(s)	64, 177
PspN4I	GGNNCC	2 cut(s)	183, 1521
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	7 cut(s)	72, 494, 604, 937, 1186, 1560, 1606
RsaNI	GTAC	7 cut(s)	71, 493, 603, 936, 1185, 1559, 1605
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	15, 258
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	1 cut(s)	1798
ScrFI	CCNGG	2 cut(s)	66, 179
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	2 cut(s)	697, 1487
SfcI	CTRYAG	1 cut(s)	1486
SfuI	TTCGAA	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	3 cut(s)	1160, 1409, 1616
SmoI	CTYRAG	3 cut(s)	1160, 1409, 1616
SsiI	CCGC	2 cut(s)	1037, 1286
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	2 cut(s)	365, 1677
StyD4I	CCNGG	2 cut(s)	64, 177
TaaI	ACNGT	7 cut(s)	379, 558, 879, 1067, 1316, 1490, 1714
TatI	WGTACW	4 cut(s)	602, 935, 1184, 1558
TfiI	GAWTC	6 cut(s)	427, 455, 1006, 1093, 1255, 1342
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	5 cut(s)	563, 767, 826, 1530, 1561
TseFI	GTSAC	2 cut(s)	290, 1543
TseI	GCWGC	2 cut(s)	14, 257
Tsp45I	GTSAC	2 cut(s)	290, 1543
TspDTI	ATGAA	6 cut(s)	597, 968, 1138, 1217, 1387, 1848
TspGWI	ACGGA	2 cut(s)	1031, 1280
TspRI	CASTG	5 cut(s)	563, 767, 826, 1530, 1561
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	3 cut(s)	596, 1117, 1366
XceI	RCATGY	3 cut(s)	572, 727, 902
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	365, 1677
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.