pycom15g09010

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009883
Physical Location & Seq
Forward (+)
5787151 .. 5789011
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ATGGTTCTGCTTCACCTTCCAAGAACCCATATATCTCTCTACACCCATTTCTCCCTCTTCGCAAAACCCAAAACCCCAACCTTCGCCACCGCCACGACTCTCCCCCCAGTCCTCACCTCCGCCCTCTTCTCCGCCCCCAAATCCACCCTCTCAGCCTCCGAACCCATACCCATTTCCCAAATCCCGGAACCCCAAATCGAAACCCCCCAGGAATTCGAAACCCACATCCAAATCCCGCTCGAGAAGCTCTTCGTGCCGCCGGAAACTGAGGTCTCGTATACCAACACCGGTGCTCTGAGCACCCGAATCTTGAAAGGGTCCAATATTCTGCTCAGCAAGTACGCCAGGAACGCTCAGGTGGACCAGGCCGAGTTCGTGAAGAGCAGTGTGATGACTGAGGATTGCCCCTCTGATGGTCTCCCGGAGTTTGCTCTCGTGGGTCGGTCCAATGTCGGCAAGTCCTCGCTGCTCAACTCGCTTGTGCGGCGGAAGCGGCTCGCTTTGACGTCCAAGAAACCTGGGAAAACACAATGTATCAATCATTTTCGGATCAATGATAGCTGGTTCCTAGTGGATTTGCCCGGCTACGGGTACGCCGCTGCACCACAGGAACTTAGAACCGATTGGGTGAAGTTTACTAAAGACTACTTCCTGAATAGGTCGACATTAGTTTCGGTTTTCCTTCTCATTGATGCCAGCATTCCTGCCAAAAAAATTGATCTGGAATACGCTAGTTGGCTGGGCCAGAATCAGATTCCTATGACTTTGATATTCACCAAATGTGACAAGCGGAAAAAGAAGAGGCATGGAGGGAAGAAAGCTGAAGAGAATGTGCAGGATTTTCAGGAGTTAATAAGCGGCTTCTTCGAGACAGTGCCGCCGTGGATTATGACGAGCAGCCTGACCAATCAGGGTCGTGATGAGATGTTACTGCATATGGCTCAGCTGCGGAACTACTGGCTGAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

324

Amino Acids

36.47

Weight (kDa)

9.27

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 143 - 260 2.4e-18 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 2 cut(s) 278, 662
AclWI GGATC 1 cut(s) 557
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 843
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 2 cut(s) 341, 593
AfiI CCNNNNNNNGG 4 cut(s) 184, 413, 587, 588
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 4 cut(s) 207, 344, 363, 517
AluBI AGCT 4 cut(s) 247, 561, 821, 946
AluI AGCT 4 cut(s) 247, 561, 821, 946
Alw21I GWGCWC 2 cut(s) 295, 302
Alw26I GTCTC 3 cut(s) 277, 422, 863
AlwI GGATC 1 cut(s) 557
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 366, 742
ApeKI GCWGC 4 cut(s) 466, 599, 897, 946
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 655, 687
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 248
AspS9I GGNCC 4 cut(s) 318, 361, 444, 742
AsuC2I CCSGG 3 cut(s) 185, 422, 582
AsuHPI GGTGA 4 cut(s) 5, 106, 640, 766
AsuII TTCGAA 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 3 cut(s) 318, 361, 444
BauI CACGAG 1 cut(s) 434
Bbv12I GWGCWC 2 cut(s) 295, 302
BbvI GCAGC 4 cut(s) 453, 586, 909, 933
BccI CCATC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 865
BciT130I CCWGG 4 cut(s) 209, 346, 365, 519
BcnI CCSGG 3 cut(s) 185, 422, 582
BcoDI GTCTC 3 cut(s) 277, 422, 863
BfaI CTAG 3 cut(s) 569, 732, 970
BlpI GCTNAGC 2 cut(s) 332, 942
Bme1390I CCNGG 7 cut(s) 185, 209, 346, 365, 422, 519, 582
Bme18I GGWCC 3 cut(s) 318, 361, 444
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 4 cut(s) 318, 361, 444, 742
BmiI GGNNCC 3 cut(s) 189, 319, 566
BmrFI CCNGG 7 cut(s) 185, 209, 346, 365, 422, 519, 582
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 682
BmuI ACTGGG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 354
Bpu1102I GCTNAGC 2 cut(s) 332, 942
Bpu14I TTCGAA 1 cut(s) 216
BpuMI CCSGG 3 cut(s) 185, 422, 582
BsaHI GRCGYC 1 cut(s) 506
BsaI GGTCTC 2 cut(s) 277, 422
BsaJI CCNNGG 3 cut(s) 207, 518, 881
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 413, 587, 588
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 107, 962
BseBI CCWGG 4 cut(s) 209, 346, 365, 519
BseDI CCNNGG 3 cut(s) 207, 518, 881
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 4 cut(s) 184, 413, 587, 588
BseMII CTCAG 7 cut(s) 165, 258, 287, 346, 368, 387, 956
BseNI ACTGG 2 cut(s) 107, 962
BseXI GCAGC 4 cut(s) 453, 586, 909, 933
BseYI CCCAGC 1 cut(s) 739
BsgI GTGCAG 2 cut(s) 585, 854
BshFI GGCC 2 cut(s) 368, 744
BshTI ACCGGT 1 cut(s) 287
BsiHKAI GWGCWC 2 cut(s) 295, 302
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 5 cut(s) 185, 260, 288, 422, 582
BslI CCNNNNNNNGG 4 cut(s) 184, 413, 587, 588
BsmAI GTCTC 3 cut(s) 277, 422, 863
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 2 cut(s) 368, 744
Bso31I GGTCTC 2 cut(s) 277, 422
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 295, 302
Bsp143I GATC 2 cut(s) 549, 718
Bsp1720I GCTNAGC 2 cut(s) 332, 942
BspANI GGCC 2 cut(s) 368, 744
BspCNI CTCAG 7 cut(s) 164, 259, 288, 345, 367, 388, 955
BspLI GGNNCC 3 cut(s) 189, 319, 566
BspPI GGATC 1 cut(s) 557
BspQI GCTCTTC 2 cut(s) 254, 374
BspT104I TTCGAA 1 cut(s) 216
BspTNI GGTCTC 2 cut(s) 277, 422
BsrBI CCGCTC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 107, 962
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 207, 518, 881
BssMI GATC 2 cut(s) 549, 718
BssNAI GTATAC 1 cut(s) 279
BssNI GRCGYC 1 cut(s) 506
BssSI CACGAG 1 cut(s) 434
Bst1107I GTATAC 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 434
Bst2UI CCWGG 4 cut(s) 209, 346, 365, 519
Bst4CI ACNGT 1 cut(s) 874
Bst6I CTCTTC 6 cut(s) 62, 131, 254, 374, 794, 819
BstACI GRCGYC 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 498, 697
BstDEI CTNAG 8 cut(s) 151, 267, 296, 332, 354, 396, 614, 942
BstDSI CCRYGG 1 cut(s) 881
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 2 cut(s) 552, 721
BstMAI GTCTC 3 cut(s) 277, 422, 863
BstMBI GATC 2 cut(s) 549, 718
BstMWI GCNNNNNNNGC 7 cut(s) 244, 253, 350, 475, 484, 490, 493
BstNI CCWGG 4 cut(s) 209, 346, 365, 519
BstSCI CCNGG 7 cut(s) 183, 207, 344, 363, 420, 517, 580
BstV1I GCAGC 4 cut(s) 453, 586, 909, 933
BstZ17I GTATAC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 368, 744
BtgI CCRYGG 1 cut(s) 881
BtsCI GGATG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 391, 879
Cac8I GCNNGC 2 cut(s) 498, 697
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 4 cut(s) 318, 361, 444, 742
Csp6I GTAC 2 cut(s) 340, 592
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 1 cut(s) 806
CviQI GTAC 2 cut(s) 340, 592
DdeI CTNAG 8 cut(s) 151, 267, 296, 332, 354, 396, 614, 942
DpnI GATC 2 cut(s) 551, 720
DpnII GATC 2 cut(s) 549, 718
Eam1104I CTCTTC 6 cut(s) 62, 131, 254, 374, 794, 819
EarI CTCTTC 6 cut(s) 62, 131, 254, 374, 794, 819
EciI GGCGGA 3 cut(s) 109, 121, 502
Eco31I GGTCTC 2 cut(s) 277, 422
Eco47I GGWCC 3 cut(s) 318, 361, 444
Eco57I CTGAAG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 4 cut(s) 207, 344, 363, 517
FaeI CATG 1 cut(s) 809
FaiI YATR 9 cut(s) 30, 32, 167, 279, 761, 807, 890, 936, 938
FatI CATG 1 cut(s) 805
FauI CCCGC 1 cut(s) 243
FauNDI CATATG 1 cut(s) 936
FblI GTMKAC 2 cut(s) 278, 662
FokI GGATG 1 cut(s) 212
FspBI CTAG 3 cut(s) 569, 732, 970
GsaI CCCAGC 1 cut(s) 743
HaeIII GGCC 2 cut(s) 368, 744
HapII CCGG 5 cut(s) 185, 260, 288, 422, 582
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 1 cut(s) 809
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 4 cut(s) 97, 306, 748, 754
HpaII CCGG 5 cut(s) 185, 260, 288, 422, 582
HphI GGTGA 4 cut(s) 5, 106, 640, 766
Hpy166II GTNNAC 4 cut(s) 279, 361, 636, 663
Hpy188I TCNGA 5 cut(s) 160, 297, 412, 549, 753
Hpy188III TCNNGA 8 cut(s) 241, 310, 376, 652, 722, 845, 868, 917
Hpy8I GTNNAC 4 cut(s) 279, 361, 636, 663
HpyAV CCTTC 3 cut(s) 26, 91, 692
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 3 cut(s) 602, 835, 934
HpyF10VI GCNNNNNNNGC 7 cut(s) 244, 253, 350, 475, 484, 490, 493
HpyF3I CTNAG 8 cut(s) 151, 267, 296, 332, 354, 396, 614, 942
HpySE526I ACGT 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 1 cut(s) 809
Kzo9I GATC 2 cut(s) 549, 718
LguI GCTCTTC 2 cut(s) 254, 374
Lsp1109I GCAGC 4 cut(s) 453, 586, 909, 933
LweI GCATC 1 cut(s) 682
MaeI CTAG 3 cut(s) 569, 732, 970
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 2 cut(s) 782, 927
MalI GATC 2 cut(s) 551, 720
MbiI CCGCTC 1 cut(s) 238
MboI GATC 2 cut(s) 549, 718
MboII GAAGA 8 cut(s) 49, 118, 241, 391, 811, 826, 836, 856
MhlI GDGCHC 2 cut(s) 295, 302
MluCI AATT 2 cut(s) 212, 714
MlyI GAGTC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 1 cut(s) 851
MspA1I CMGCKG 2 cut(s) 599, 946
MspI CCGG 5 cut(s) 185, 260, 288, 422, 582
MspR9I CCNGG 7 cut(s) 185, 209, 346, 365, 422, 519, 582
Mva1269I GAATGC 1 cut(s) 699
MvaI CCWGG 4 cut(s) 209, 346, 365, 519
MwoI GCNNNNNNNGC 7 cut(s) 244, 253, 350, 475, 484, 490, 493
NciI CCSGG 3 cut(s) 185, 422, 582
NdeI CATATG 1 cut(s) 936
NdeII GATC 2 cut(s) 549, 718
NlaIII CATG 1 cut(s) 809
NlaIV GGNNCC 3 cut(s) 189, 319, 566
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 782
NspV TTCGAA 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 239
PciSI GCTCTTC 2 cut(s) 254, 374
PctI GAATGC 1 cut(s) 699
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 3 cut(s) 306, 748, 754
PfoI TCCNGGA 2 cut(s) 183, 420
PinAI ACCGGT 1 cut(s) 287
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 4 cut(s) 207, 344, 363, 517
PspFI CCCAGC 1 cut(s) 739
PspGI CCWGG 4 cut(s) 207, 344, 363, 517
PspN4I GGNNCC 3 cut(s) 189, 319, 566
PspPI GGNCC 4 cut(s) 318, 361, 444, 742
PvuII CAGCTG 1 cut(s) 946
RsaI GTAC 2 cut(s) 341, 593
RsaNI GTAC 2 cut(s) 340, 592
SalI GTCGAC 1 cut(s) 661
SapI GCTCTTC 2 cut(s) 254, 374
SaqAI TTAA 1 cut(s) 851
Sau3AI GATC 2 cut(s) 549, 718
Sau96I GGNCC 4 cut(s) 318, 361, 444, 742
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 7 cut(s) 185, 209, 346, 365, 422, 519, 582
SduI GDGCHC 2 cut(s) 295, 302
SfaNI GCATC 1 cut(s) 682
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 216
SgrAI CRCCGGYG 1 cut(s) 287
SinI GGWCC 3 cut(s) 318, 361, 444
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 212, 714
SspI AATATT 1 cut(s) 325
SspMI CTAG 3 cut(s) 569, 732, 970
StyD4I CCNGG 7 cut(s) 183, 207, 344, 363, 420, 517, 580
TaaI ACNGT 1 cut(s) 874
TaiI ACGT 1 cut(s) 509
TaqI TCGA 5 cut(s) 198, 216, 240, 662, 867
TaqII GACCGA 1 cut(s) 432
TasI AATT 2 cut(s) 212, 714
TauI GCSGC 6 cut(s) 259, 487, 496, 599, 861, 880
TfiI GAWTC 3 cut(s) 306, 748, 754
Tru1I TTAA 1 cut(s) 851
Tru9I TTAA 1 cut(s) 851
TscAI CASTG 2 cut(s) 391, 879
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 4 cut(s) 466, 599, 897, 946
Tsp45I GTSAC 1 cut(s) 782
TspRI CASTG 2 cut(s) 391, 879
VpaK11BI GGWCC 3 cut(s) 318, 361, 444
XapI RAATTY 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 2 cut(s) 278, 662
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 3 cut(s) 569, 732, 970
ZraI GACGTC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.