pycom15g09420

AIG2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010238
Physical Location & Seq
Reverse (-)
6145870 .. 6146424
555 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGAGTCGTGGTGCGACGAGTTCAGTGGTGGCGAACGTAGGTGGTCAGTCGCAGAGCCCCCACAAGGTGTTCGTGTACGGCAGCCTCATGGCGGAGGATGTCTGCCGTGTCCTCTTAAATCGCGACCCTCAATCCTCCCCTGCCCTCCTCAACGGCCAGTACAGCATCAAAGAAAGAGTTTATCCGGCGATTCTACCCGTCGAGAATAAAACAGTTGCCGGCAAGGTGCTGTTGGGCATCACAGATCCTGAATTACATATTTTAGATGAATTTGAGGGTGCTGTGCCTGAGTATGAAAGAAGCACTGTTGAGGTCTCTTTGATGGTATTCACTTTTTCACTTTTTGCTTTTTACTTTTTACTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

123

Amino Acids

13.4

Weight (kDa)

5.05

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 23 - 107 2.8e-16 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 269
AdeI CACNNNGTG 1 cut(s) 67
AfaI GTAC 2 cut(s) 77, 161
AfiI CCNNNNNNNGG 2 cut(s) 64, 91
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 239
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 269
BanII GRGCYC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 316
BceAI ACGGC 3 cut(s) 90, 94, 169
BcoDI GTCTC 1 cut(s) 319
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
BmsI GCATC 2 cut(s) 174, 246
BsaI GGTCTC 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 91
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 64, 91
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 185, 219
BslI CCNNNNNNNGG 2 cut(s) 64, 91
BsmAI GTCTC 1 cut(s) 319
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 244
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 123
BspPI GGATC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 218
BssMI GATC 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 214, 307
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 30, 303
BtuMI TCGCGA 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 218
Csp6I GTAC 2 cut(s) 76, 160
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 57, 84, 156
CviKI_1 RGCY 3 cut(s) 57, 84, 156
CviQI GTAC 2 cut(s) 76, 160
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraIII CACNNNGTG 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 154
EciI GGCGGA 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 89, 258, 294
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 156
HapII CCGG 2 cut(s) 185, 219
Hin1II CATG 1 cut(s) 91
HinfI GANTC 2 cut(s) 4, 190
HpaII CCGG 2 cut(s) 185, 219
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 122, 202, 248
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 19, 203
HpyCH4III ACNGT 2 cut(s) 214, 307
HpyCH4IV ACGT 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 91
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 153, 170, 198, 232, 261, 300
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 2 cut(s) 174, 246
MaeII ACGT 1 cut(s) 36
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 251, 269
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 9 cut(s) 88, 95, 122, 138, 145, 155, 158, 268, 304
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 1 cut(s) 116
MspI CCGG 2 cut(s) 185, 219
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 162
NaeI GCCGGC 1 cut(s) 220
NdeII GATC 1 cut(s) 244
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 1 cut(s) 91
NruI TCGCGA 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 244
RruI TCGCGA 1 cut(s) 123
RsaI GTAC 2 cut(s) 77, 161
RsaNI GTAC 2 cut(s) 76, 160
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 244
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 39, 43, 69, 228, 315
SfaNI GCATC 2 cut(s) 174, 246
Sse9I AATT 2 cut(s) 251, 269
SsiI CCGC 1 cut(s) 92
TaaI ACNGT 2 cut(s) 214, 307
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 201
TasI AATT 2 cut(s) 251, 269
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 30, 310
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 282, 309
TspRI CASTG 2 cut(s) 30, 310
XapI RAATTY 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.