Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

9799721 .. 9801127

Gene Structure 1407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAAGCAGTGATGGCGTGTTGGGAGCTCGATCAGTCTCTGCAGAGCTTAACAGGTGTATCCACGGGTGAAGGAACGGGTGCTACCATGTCCGATGATGATGACCAGGTGGATAGTGACATCAACTCCTATGATGGAAGTCTGGATGGCCCTGACACCATGGGATTTGGCCCTCTTGTTCCGACTGAAAGTGAGAGGTCCTTGATGGAGCGCGTAAGGCAGGAACTGAAGCATGAGCTGAAACAGGGTTACAAGGAAAAGATCGTCGACATTAGAGAGGAAATTCTGCGCAAGAGAAGAGCGGGGAAACTGCCAGGTGACACAACTTCTGTCTTAAAATCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCAACAGAAGAAGACAAAGCCAGATTAGTGCAGGAAACAGGCTTGCAATTGAAACAGATTAATAACTGGTTTATTAATCAAAGAAAAAGGAATTGGCACAGCAACATTTCATCAACTTCCGTTCCTAAGAGCAAACGCAAGAGTAATGCAGGTGACATGAACAACCAACGATTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

184

Amino Acids

20.87

Weight (kDa)

6.33

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELK	PF03789	75 - 96	2.5e-07	ELK domain
Homeobox_KN	PF05920	115 - 154	2.7e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	512
Acc16I	TGCGCA	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	424, 547
AjnI	CCWGG	2 cut(s)	105, 313
AjuI	GAANNNNNNNTTGG	2 cut(s)	448, 480
AluBI	AGCT	3 cut(s)	28, 48, 238
AluI	AGCT	3 cut(s)	28, 48, 238
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	42
AlwNI	CAGNNNCTG	2 cut(s)	40, 226
AoxI	GGCC	3 cut(s)	148, 169, 365
ApoI	RAATTY	1 cut(s)	282
AseI	ATTAAT	2 cut(s)	432, 447
AspLEI	GCGC	2 cut(s)	213, 291
AspS9I	GGNCC	3 cut(s)	149, 170, 198
AsuHPI	GGTGA	3 cut(s)	80, 329, 536
AvaII	GGWCC	1 cut(s)	198
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	30
BccI	CCATC	4 cut(s)	7, 128, 140, 199
BciT130I	CCWGG	2 cut(s)	107, 315
BciVI	GTATCC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	107, 315
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	3 cut(s)	149, 170, 198
BmrFI	CCNGG	2 cut(s)	107, 315
BpiI	GAAGAC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	63, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse1I	ACTGG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	107, 315
BseDI	CCNNGG	2 cut(s)	63, 159
BseGI	GGATG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	150, 171, 367
BsiHKAI	GWGCWC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	150, 171, 367
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	31, 261
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	3 cut(s)	150, 171, 367
BspFNI	CGCG	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	63, 159
BssMI	GATC	2 cut(s)	31, 261
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	107, 315
Bst6I	CTCTTC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	2 cut(s)	63, 159
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	213, 291
BstKTI	GATC	2 cut(s)	34, 264
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	31, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 217
BstNI	CCWGG	2 cut(s)	107, 315
BstSCI	CCNGG	2 cut(s)	105, 313
BstSFI	CTRYAG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	150, 171, 367
BtgI	CCRYGG	2 cut(s)	63, 159
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	416
CaiI	CAGNNNCTG	2 cut(s)	40, 226
CfoI	GCGC	2 cut(s)	213, 291
Cfr13I	GGNCC	3 cut(s)	149, 170, 198
CsiI	ACCWGGT	1 cut(s)	105
CviAII	CATG	4 cut(s)	88, 160, 233, 529
CviJI	RGCY	8 cut(s)	28, 48, 150, 171, 238, 367, 392, 414
CviKI_1	RGCY	8 cut(s)	28, 48, 150, 171, 238, 367, 392, 414
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	2 cut(s)	33, 263
DpnII	GATC	2 cut(s)	31, 261
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	105, 313
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	4 cut(s)	91, 163, 236, 532
FaiI	YATR	5 cut(s)	89, 132, 161, 234, 530
FatI	CATG	4 cut(s)	87, 159, 232, 528
FauI	CCCGC	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	30
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	2 cut(s)	212, 290
HaeIII	GGCC	3 cut(s)	150, 171, 367
HhaI	GCGC	2 cut(s)	213, 291
Hin1II	CATG	4 cut(s)	91, 163, 236, 532
Hin6I	GCGC	2 cut(s)	211, 289
HinP1I	GCGC	2 cut(s)	211, 289
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HphI	GGTGA	3 cut(s)	80, 329, 536
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	94, 183
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	43, 403, 418, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 217
HpyF3I	CTNAG	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	91, 163, 236, 532
HspAI	GCGC	2 cut(s)	211, 289
Kzo9I	GATC	2 cut(s)	31, 261
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	25, 208
MabI	ACCWGGT	1 cut(s)	105
MaeIII	GTNAC	4 cut(s)	116, 248, 317, 524
MalI	GATC	2 cut(s)	33, 263
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	2 cut(s)	31, 261
MboII	GAAGA	3 cut(s)	309, 392, 395
MfeI	CAATTG	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	3 cut(s)	282, 419, 463
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	183, 189, 271
MseI	TTAA	4 cut(s)	50, 335, 432, 447
MspR9I	CCNGG	2 cut(s)	107, 315
MunI	CAATTG	1 cut(s)	419
MvaI	CCWGG	2 cut(s)	107, 315
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	14, 217
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	31, 261
NlaIII	CATG	4 cut(s)	91, 163, 236, 532
NmuCI	GTSAC	3 cut(s)	116, 317, 524
NsbI	TGCGCA	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	198
PshBI	ATTAAT	2 cut(s)	432, 447
Psp124BI	GAGCTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	105, 313
PspGI	CCWGG	2 cut(s)	105, 313
PspPI	GGNCC	3 cut(s)	149, 170, 198
PspPPI	RGGWCCY	1 cut(s)	198
PsrI	GAACNNNNNNTAC	2 cut(s)	67, 99
PstI	CTGCAG	1 cut(s)	45
PstNI	CAGNNNCTG	2 cut(s)	40, 226
SacI	GAGCTC	1 cut(s)	30
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	4 cut(s)	50, 335, 432, 447
Sau3AI	GATC	2 cut(s)	31, 261
Sau96I	GGNCC	3 cut(s)	149, 170, 198
ScrFI	CCNGG	2 cut(s)	107, 315
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	30, 50, 58, 111, 200, 240, 319, 526
SexAI	ACCWGGT	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	198
Sse9I	AATT	3 cut(s)	282, 419, 463
SsiI	CCGC	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	105, 313
StyI	CCWWGG	1 cut(s)	159
TaqI	TCGA	2 cut(s)	30, 267
TasI	AATT	3 cut(s)	282, 419, 463
Tru1I	TTAA	4 cut(s)	50, 335, 432, 447
Tru9I	TTAA	4 cut(s)	50, 335, 432, 447
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	3 cut(s)	116, 317, 524
Tsp45I	GTSAC	3 cut(s)	116, 317, 524
TspDTI	ATGAA	2 cut(s)	471, 545
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	198
VspI	ATTAAT	2 cut(s)	432, 447
XapI	RAATTY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.