pycom15g15560

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004338
Physical Location & Seq
Reverse (-)
10833525 .. 10834255
731 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 537 bp
ATGGTGATAAGACAGCTCCCAATATGGGCAACAACCATCATATTTTGGACTAGTTATGCACAGATGATGACCTCTGTACAAGCAGCATCCACCATGGACAGGTCGATCGGAAATTTTCAAATCCAACTGGCTGGCTCTCTCACCGTCTTCTCTTGCAACAATACAGGCTGCACAAAACTGCAGAAAATGGCAATTGGGCTTGTACTAGCAACTATTGGGATGGGTGCAGCAGCACTAGGTGAGAGGATGAAGTTAGCGGTGGCAAAAGCCAACGGAGGATTGAGTCCTTTGCCGATTAGGGTTTTCTTGCTCCCTCAATTTCTTGCTGGTGGGTGCCGTCTCTTGGTTTGGATTGTTACTAAGGTGATAGGAGGCAAAAATGGGGGATGGCTTGCAAAAACCATAAACCCGGGGAGGCTTGACTGTTTTTATGGGACTTTTAACCGTTCTCGGCGTCATCAACTTCAGTGCATATATTTGTTGTGCAAGGTGGTTCAAGCCACGAAAACCCACACCACCACCGGATTCTGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

179

Amino Acids

19.34

Weight (kDa)

10.07

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 2 - 104 1.2e-08 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 333
AciI CCGC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 454
AdeI CACNNNGTG 1 cut(s) 239
AfaI GTAC 2 cut(s) 78, 204
AfiI CCNNNNNNNGG 3 cut(s) 25, 99, 343
AgsI TTSAA 2 cut(s) 119, 497
AhlI ACTAGT 1 cut(s) 50
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 409
ApeKI GCWGC 5 cut(s) 83, 168, 227, 230, 531
ApoI RAATTY 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 410, 411
AsuHPI GGTGA 4 cut(s) 16, 133, 251, 376
AvaI CYCGRG 1 cut(s) 409
BanI GGYRCC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 95, 155, 239, 242, 518
BccI CCATC 3 cut(s) 44, 214, 381
BceAI ACGGC 1 cut(s) 321
BcnI CCSGG 2 cut(s) 410, 411
BcoDI GTCTC 1 cut(s) 344
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 4 cut(s) 51, 206, 236, 535
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 5 cut(s) 84, 169, 228, 231, 532
BlsI GCNGC 5 cut(s) 85, 170, 229, 232, 533
Bme1390I CCNGG 2 cut(s) 410, 411
BmeT110I CYCGRG 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 2 cut(s) 410, 411
BmsI GCATC 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 139
BpuMI CCSGG 2 cut(s) 410, 411
BsaHI GRCGYC 1 cut(s) 454
BsaJI CCNNGG 3 cut(s) 93, 409, 410
BsaWI WCCGGW 1 cut(s) 521
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 99, 343
Bse1I ACTGG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 93, 409, 410
BseGI GGATG 4 cut(s) 86, 225, 252, 392
BseLI CCNNNNNNNGG 3 cut(s) 25, 99, 343
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 5 cut(s) 95, 155, 239, 242, 518
BsgI GTGCAG 2 cut(s) 154, 246
Bsh1285I CGRYCG 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 409
BsiSI CCGG 2 cut(s) 410, 522
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 25, 99, 343
BsmAI GTCTC 1 cut(s) 344
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 409
Bsp1407I TGTACA 1 cut(s) 76
Bsp143I GATC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 335
BspMAI CTGCAG 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 76
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 93, 409, 410
BssMI GATC 1 cut(s) 105
BssNI GRCGYC 1 cut(s) 454
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 145, 425, 446
BstACI GRCGYC 1 cut(s) 454
BstAUI TGTACA 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 133, 393
BstDEI CTNAG 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 4 cut(s) 86, 225, 252, 392
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 1 cut(s) 105
BstMCI CGRYCG 1 cut(s) 108
BstSCI CCNGG 2 cut(s) 408, 409
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 5 cut(s) 95, 155, 239, 242, 518
BstV2I GAAGAC 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 4 cut(s) 86, 225, 252, 392
BtsIMutI CAGTG 1 cut(s) 473
Cac8I GCNNGC 2 cut(s) 133, 393
Cfr9I CCCGGG 1 cut(s) 409
CseI GACGC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 77, 203
CviAII CATG 1 cut(s) 94
CviJI RGCY 9 cut(s) 16, 131, 135, 168, 199, 269, 391, 418, 500
CviKI_1 RGCY 9 cut(s) 16, 131, 135, 168, 199, 269, 391, 418, 500
CviQI GTAC 2 cut(s) 77, 203
DdeI CTNAG 1 cut(s) 360
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraIII CACNNNGTG 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 1 cut(s) 97
FaiI YATR 8 cut(s) 25, 41, 57, 95, 404, 432, 473, 475
FaqI GGGAC 1 cut(s) 448
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 5 cut(s) 84, 169, 228, 231, 532
FokI GGATG 4 cut(s) 73, 232, 259, 399
Fsp4HI GCNGC 5 cut(s) 84, 169, 228, 231, 532
FspBI CTAG 4 cut(s) 51, 206, 236, 535
GluI GCNGC 5 cut(s) 84, 169, 228, 231, 532
HapII CCGG 2 cut(s) 410, 522
HgaI GACGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 1 cut(s) 97
HinfI GANTC 2 cut(s) 283, 525
HpaII CCGG 2 cut(s) 410, 522
HphI GGTGA 4 cut(s) 16, 133, 251, 376
Hpy188I TCNGA 1 cut(s) 110
HpyCH4III ACNGT 3 cut(s) 145, 425, 446
HpyCH4V TGCA 8 cut(s) 59, 156, 171, 181, 227, 395, 471, 486
HpyF3I CTNAG 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 21, 315
LpnPI CCDG 6 cut(s) 85, 113, 117, 150, 312, 423
Lsp1109I GCAGC 5 cut(s) 95, 155, 239, 242, 518
LweI GCATC 1 cut(s) 95
MaeI CTAG 4 cut(s) 51, 206, 236, 535
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 139
MfeI CAATTG 1 cut(s) 192
MluCI AATT 3 cut(s) 112, 192, 317
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 6 cut(s) 82, 237, 269, 324, 365, 408
MseI TTAA 1 cut(s) 441
MspI CCGG 2 cut(s) 410, 522
MspR9I CCNGG 2 cut(s) 410, 411
MunI CAATTG 1 cut(s) 192
NciI CCSGG 2 cut(s) 410, 411
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 335
NmeAIII GCCGAG 1 cut(s) 430
PfeI GAWTC 1 cut(s) 525
PkrI GCNGC 5 cut(s) 85, 170, 229, 232, 533
Ple19I CGATCG 1 cut(s) 108
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 183
PvuI CGATCG 1 cut(s) 108
RsaI GTAC 2 cut(s) 78, 204
RsaNI GTAC 2 cut(s) 77, 203
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 5 cut(s) 84, 169, 228, 231, 532
Sau3AI GATC 1 cut(s) 105
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 2 cut(s) 410, 411
SetI ASST 6 cut(s) 18, 74, 104, 241, 366, 492
SfaNI GCATC 1 cut(s) 95
SfcI CTRYAG 1 cut(s) 179
SmaI CCCGGG 1 cut(s) 411
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 3 cut(s) 112, 192, 317
SsiI CCGC 1 cut(s) 257
SspMI CTAG 4 cut(s) 51, 206, 236, 535
StyD4I CCNGG 2 cut(s) 408, 409
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 145, 425, 446
TaqI TCGA 1 cut(s) 104
TasI AATT 3 cut(s) 112, 192, 317
TatI WGTACW 2 cut(s) 76, 202
TfiI GAWTC 1 cut(s) 525
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 473
TseI GCWGC 5 cut(s) 83, 168, 227, 230, 531
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 288
TspMI CCCGGG 1 cut(s) 409
TspRI CASTG 1 cut(s) 473
XapI RAATTY 1 cut(s) 112
XmaI CCCGGG 1 cut(s) 409
XspI CTAG 4 cut(s) 51, 206, 236, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.