pycom15g16820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009253
Physical Location & Seq
Forward (+)
11798151 .. 11798991
841 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGCACAACTCACACAAATCCCTGGATTCATGGCACTCCGTCGATTCCTGCGTGTTCCAGCTCCATGGCTGGAGACCTTTCCATCTGCAGCAGCAGCAGCAGACTTCCACGCCCACCTTCAAAACCCTAGACTTTGCCGATCGCAAATCCAATGGACGACTTTTTTTTTCTATCGATGCCATCAACATGTCCCGGCTTACCTTGGTCGACGACGACAGGACGATCTCCGACGGACACCGTACTAGGAACGGGAGCTTCCAATTCATCGCGAAGAAGCGACGGCGTTGTGGGTCGATGTCAGTTTTCGGGATGAGTAGTGAGCAAAGTGGGACCCATAAGTACTGCTCGGTTGGGGCTTCGGCGGCGTATGGGACATGTTCAGATTTTCGGGTAGTGCTGGGGACATACTCGAGTGGGGAGCTGTTTGGGAATGGGGATGCGAATTGGGCTGGAAAGAAAGAGAATGTGGGTGTTGAGTTTGGTCACACTAGGGGTTTTGATGCTCAGGGGAATGAGTCCGGGTACAGCAGTGAATCGGGTTATTGCGGGGACGCGGAGTTCGGCTATGGCAATGAGTTTGATGAAGAGGAGGAGGATACTCATGTATTGTTTTGGGGCGATCAATTTGGAGATGCTGATTCTATGATGGAGACAGTAGGGGATAATACATTCGTGGATCAAAAGTCCCATCACAAATGTCGGCGTAAGAAACACGATTGCATAATGGTTGATGCATTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.72

Weight (kDa)

5.81

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AccII CGCG 2 cut(s) 269, 554
AciI CCGC 3 cut(s) 362, 546, 554
AclWI GGATC 1 cut(s) 684
AfaI GTAC 3 cut(s) 241, 341, 524
AflIII ACRYGT 2 cut(s) 186, 374
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 21
AloI GAACNNNNNNTCC 2 cut(s) 542, 574
AluBI AGCT 3 cut(s) 61, 255, 421
AluI AGCT 3 cut(s) 61, 255, 421
Alw26I GTCTC 2 cut(s) 67, 644
AlwI GGATC 1 cut(s) 684
Ama87I CYCGRG 1 cut(s) 409
ApeKI GCWGC 4 cut(s) 88, 91, 94, 97
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 2 cut(s) 193, 520
AvaI CYCGRG 1 cut(s) 409
AvaII GGWCC 1 cut(s) 330
BaeI ACNNNNGTAYC 4 cut(s) 514, 547, 588, 621
BbvI GCAGC 4 cut(s) 100, 103, 106, 109
BccI CCATC 4 cut(s) 90, 188, 640, 696
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 1 cut(s) 589
BcnI CCSGG 2 cut(s) 193, 520
BcoDI GTCTC 2 cut(s) 67, 644
BfaI CTAG 3 cut(s) 128, 243, 489
BfmI CTRYAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 5 cut(s) 89, 92, 95, 98, 363
BlsI GCNGC 5 cut(s) 90, 93, 96, 99, 364
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 3 cut(s) 23, 193, 520
Bme18I GGWCC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 331, 332
BmrFI CCNGG 3 cut(s) 23, 193, 520
BmsI GCATC 5 cut(s) 166, 427, 490, 622, 721
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 504
BpuMI CCSGG 2 cut(s) 193, 520
Bsa29I ATCGAT 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 21, 64, 201
Bse3DI GCAATG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 21, 64, 201
BseGI GGATG 2 cut(s) 315, 442
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 1 cut(s) 518
BseRI GAGGAG 2 cut(s) 602, 605
BseXI GCAGC 4 cut(s) 100, 103, 106, 109
BseYI CCCAGC 1 cut(s) 397
Bsh1236I CGCG 2 cut(s) 269, 554
Bsh1285I CGRYCG 1 cut(s) 142
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 409
BsiSI CCGG 2 cut(s) 193, 519
BslFI GGGAC 6 cut(s) 175, 343, 385, 415, 563, 670
BsmAI GTCTC 2 cut(s) 67, 644
BsmFI GGGAC 6 cut(s) 175, 343, 385, 415, 563, 670
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 409
Bsp143I GATC 4 cut(s) 139, 222, 619, 676
Bsp19I CCATGG 1 cut(s) 64
Bsp68I TCGCGA 1 cut(s) 269
BspACI CCGC 3 cut(s) 362, 546, 554
BspCNI CTCAG 1 cut(s) 517
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 2 cut(s) 269, 554
BspLI GGNNCC 2 cut(s) 331, 332
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 577
BssECI CCNNGG 3 cut(s) 21, 64, 201
BssMI GATC 4 cut(s) 139, 222, 619, 676
BssT1I CCWWGG 2 cut(s) 64, 201
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 239, 655
Bst6I CTCTTC 1 cut(s) 579
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 315, 442
BstFNI CGCG 2 cut(s) 269, 554
BstKTI GATC 4 cut(s) 142, 225, 622, 679
BstMAI GTCTC 2 cut(s) 67, 644
BstMBI GATC 4 cut(s) 139, 222, 619, 676
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 4 cut(s) 94, 97, 362, 446
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 2 cut(s) 190, 378
BstSCI CCNGG 3 cut(s) 21, 191, 518
BstSFI CTRYAG 1 cut(s) 86
BstUI CGCG 2 cut(s) 269, 554
BstV1I GCAGC 4 cut(s) 100, 103, 106, 109
BstXI CCANNNNNNTGG 1 cut(s) 65
Bsu15I ATCGAT 1 cut(s) 174
BsuI GTATCC 1 cut(s) 589
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 315, 442
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 535
BtuMI TCGCGA 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 1 cut(s) 560
Csp6I GTAC 3 cut(s) 240, 340, 523
CviAII CATG 5 cut(s) 30, 65, 187, 375, 602
CviJI RGCY 8 cut(s) 61, 69, 196, 255, 356, 421, 449, 564
CviKI_1 RGCY 8 cut(s) 61, 69, 196, 255, 356, 421, 449, 564
CviQI GTAC 3 cut(s) 240, 340, 523
DdeI CTNAG 1 cut(s) 504
DpnI GATC 4 cut(s) 141, 224, 621, 678
DpnII GATC 4 cut(s) 139, 222, 619, 676
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco130I CCWWGG 2 cut(s) 64, 201
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 64, 201
EcoT22I ATGCAT 1 cut(s) 736
ErhI CCWWGG 2 cut(s) 64, 201
FaeI CATG 5 cut(s) 33, 68, 190, 378, 605
FaqI GGGAC 6 cut(s) 175, 343, 385, 415, 563, 670
FatI CATG 5 cut(s) 29, 64, 186, 374, 601
FauI CCCGC 1 cut(s) 539
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 5 cut(s) 89, 92, 95, 98, 363
FokI GGATG 2 cut(s) 322, 449
Fsp4HI GCNGC 5 cut(s) 89, 92, 95, 98, 363
FspBI CTAG 3 cut(s) 128, 243, 489
GluI GCNGC 5 cut(s) 89, 92, 95, 98, 363
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 91
HapII CCGG 2 cut(s) 193, 519
HgaI GACGC 1 cut(s) 560
Hin1II CATG 5 cut(s) 33, 68, 190, 378, 605
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 5 cut(s) 26, 44, 515, 533, 638
HpaII CCGG 2 cut(s) 193, 519
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 229, 382
Hpy188III TCNNGA 2 cut(s) 268, 307
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 5 cut(s) 44, 212, 215, 233, 282
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 239, 655
HpyCH4V TGCA 4 cut(s) 4, 88, 720, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 97, 362, 446
HpyF3I CTNAG 1 cut(s) 504
Hsp92II CATG 5 cut(s) 33, 68, 190, 378, 605
KflI GGGWCCC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 139, 222, 619, 676
LmnI GCTCC 3 cut(s) 66, 252, 418
Lsp1109I GCAGC 4 cut(s) 100, 103, 106, 109
LweI GCATC 5 cut(s) 166, 427, 490, 622, 721
MaeI CTAG 3 cut(s) 128, 243, 489
MaeIII GTNAC 1 cut(s) 482
MalI GATC 4 cut(s) 141, 224, 621, 678
MboI GATC 4 cut(s) 139, 222, 619, 676
MboII GAAGA 2 cut(s) 283, 596
MluCI AATT 3 cut(s) 260, 442, 623
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 4 cut(s) 580, 583, 586, 732
Mph1103I ATGCAT 1 cut(s) 736
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 2 cut(s) 193, 519
MspR9I CCNGG 3 cut(s) 23, 193, 520
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 2 cut(s) 269, 554
MwoI GCNNNNNNNGC 4 cut(s) 94, 97, 362, 446
NciI CCSGG 2 cut(s) 193, 520
NcoI CCATGG 1 cut(s) 64
NdeII GATC 4 cut(s) 139, 222, 619, 676
NlaIII CATG 5 cut(s) 33, 68, 190, 378, 605
NlaIV GGNNCC 2 cut(s) 331, 332
NmuCI GTSAC 1 cut(s) 482
NruI TCGCGA 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 2 cut(s) 190, 378
PaeR7I CTCGAG 1 cut(s) 409
PciI ACATGT 2 cut(s) 186, 374
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 4 cut(s) 26, 44, 533, 638
PkrI GCNGC 5 cut(s) 90, 93, 96, 99, 364
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 330
PscI ACATGT 2 cut(s) 186, 374
Psp5II RGGWCCY 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 331, 332
PspPI GGNCC 1 cut(s) 330
PspPPI RGGWCCY 1 cut(s) 330
PspXI VCTCGAGB 1 cut(s) 409
PstI CTGCAG 1 cut(s) 90
PvuI CGATCG 1 cut(s) 142
RruI TCGCGA 1 cut(s) 269
RsaI GTAC 3 cut(s) 241, 341, 524
RsaNI GTAC 3 cut(s) 240, 340, 523
RseI CAYNNNNRTG 1 cut(s) 185
SalI GTCGAC 1 cut(s) 206
SatI GCNGC 5 cut(s) 89, 92, 95, 98, 363
Sau3AI GATC 4 cut(s) 139, 222, 619, 676
Sau96I GGNCC 1 cut(s) 330
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 23, 193, 520
SetI ASST 7 cut(s) 63, 79, 119, 203, 257, 423, 743
SfaNI GCATC 5 cut(s) 166, 427, 490, 622, 721
SfcI CTRYAG 1 cut(s) 86
Sfr274I CTCGAG 1 cut(s) 409
SinI GGWCC 1 cut(s) 330
SlaI CTCGAG 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
Sse9I AATT 3 cut(s) 260, 442, 623
SsiI CCGC 3 cut(s) 362, 546, 554
SspMI CTAG 3 cut(s) 128, 243, 489
StyD4I CCNGG 3 cut(s) 21, 191, 518
StyI CCWWGG 2 cut(s) 64, 201
TaaI ACNGT 2 cut(s) 239, 655
TaqI TCGA 5 cut(s) 42, 174, 207, 293, 410
TasI AATT 3 cut(s) 260, 442, 623
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 4 cut(s) 26, 44, 533, 638
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 4 cut(s) 88, 91, 94, 97
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 3 cut(s) 18, 253, 597
TspGWI ACGGA 2 cut(s) 28, 246
TspRI CASTG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 330
XceI RCATGY 2 cut(s) 190, 378
XhoI CTCGAG 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 3 cut(s) 128, 243, 489
ZrmI AGTACT 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.