Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003346

Physical Location & Seq

Genomic Coordinates Reverse (-)

13047812 .. 13050040

Gene Structure 2229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACGCTCAGTCGCAGCAGCAAGCCGGACCGGTGAAGAAGAAGGAGACTCGGGGCCGGAAGCCCAAGCCCAAGGAAGAGAAGAAAGACGACCACCAACAGCAAGCCAAGCTGAAGAAGTCGCAGGAGAACGCCACCGTCGACGACAAGTACACTCAGTGGAAGTCCCTCGTCCCCATCCTCTACGACTGGCTCGCCAACCACAATCTCGTCTGGCCCTCCCTCTCTTGCCGGTGGGGACCTCAGCTCGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCCGAGCAGACTGATGGCAGTGTTCCAAATACTCTGGTTATTGCAAACTGTGAGGTTGTCAAGCCGAGAGTCGCCGCTGCAGAGCATATATCTCAGTTCAATGAGGAAGCCCGCTCACCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGAGAGGTAAACAGAATCAGAGAACTTCCACAGAACACTAAGATAGTGGCCACACATACCGACAGTCCTGATGTTCTAATTTGGGATGTTGAAGCTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAACCTCGCGTCCAGATTTGATTTTGACTGGACATCAAGATAATGCTGAATTTGCTCTTGCATTGTGTCCAACTGAGCCCTACGTGCTCTCTGGAGGGAAGGACAAAACAGTGGTTTTGTGGAGTATTCAGGACCATATAGCAGCCTCTACCACTGATCGATCTGCAACCAAGTCTCCAGTGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009892 GO:0009987 GO:0010224 GO:0010468 GO:0010605 GO:0010629 GO:0019222 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

253

Amino Acids

28.39

Weight (kDa)

8.32

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1C_H4-bd	PF12265	49 - 116	3.5e-20	Histone-binding protein RBBP4 or subunit C of CAF1 complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19520 AT4G29730 AT4G29730 AT4G29730
fragaria_vesca	FvH4_1g07500 FvH4_6g33340 FvH4_6g33340
malus_domestica	MD02G1079600.v1.1 MD09G1193500.v1.1 MD15G1207100.v1.1
prunus_persica	Prupe.3G049900_v2.0.a1 Prupe.7G209600_v2.0.a1 Prupe.7G209600_v2.0.a1
pyrus_communis	pycom02g06340 pycom09g11000 pycom15g18350
rosa_chinensis	RchiOBHm_Chr2g0093391 RchiOBHm_Chr2g0143191
rosa_laevigata	RLG00000016395 RLG00000020012
rosa_multiflora	Rmu_sc0005227.1_g000015 Rmu_sc0032382.1_g000001 Rmu_ssc0000301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102060 Rroxscaffold_2G00148140
rosa_rugosa	Rorug02G0035100 Rorug02G0379000
rosa_samantha	Rh2AG431800 Rh2BG082700 Rh2BG440400 Rh2CG084700 Rh2CG417700 Rh2DG080400 Rh2DG450600
rosa_wichuraiana	Rw2G006520 Rw2G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	577
AciI	CCGC	2 cut(s)	363, 400
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	159
AfaI	GTAC	2 cut(s)	152, 422
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	388, 533
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	5 cut(s)	112, 247, 257, 536, 566
AluI	AGCT	5 cut(s)	112, 247, 257, 536, 566
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	3 cut(s)	41, 284, 747
Ama87I	CYCGRG	2 cut(s)	51, 248
AoxI	GGCC	3 cut(s)	55, 215, 489
ApeKI	GCWGC	4 cut(s)	16, 19, 365, 710
ApoI	RAATTY	1 cut(s)	617
AsiGI	ACCGGT	1 cut(s)	31
AspS9I	GGNCC	5 cut(s)	29, 55, 216, 239, 700
AsuHPI	GGTGA	2 cut(s)	46, 396
AvaI	CYCGRG	2 cut(s)	51, 248
AvaII	GGWCC	3 cut(s)	29, 239, 700
BalI	TGGCCA	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	657
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	28, 31, 352, 722
BccI	CCATC	3 cut(s)	185, 296, 437
BciT130I	CCWGG	1 cut(s)	441
BcoDI	GTCTC	3 cut(s)	41, 284, 747
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	5 cut(s)	17, 20, 363, 366, 711
BlsI	GCNGC	5 cut(s)	18, 21, 364, 367, 712
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	3 cut(s)	29, 239, 700
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmeT110I	CYCGRG	2 cut(s)	51, 248
BmgT120I	GGNCC	5 cut(s)	29, 55, 216, 239, 700
BmiI	GGNNCC	2 cut(s)	56, 240
BmrFI	CCNGG	1 cut(s)	441
BpmI	CTGGAG	3 cut(s)	462, 681, 729
Bpu10I	CCTNAGC	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	727
BsaAI	YACGTR	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	72, 559
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	727, 757
Bse118I	RCCGGY	2 cut(s)	31, 231
Bse1I	ACTGG	3 cut(s)	194, 601, 746
BseBI	CCWGG	1 cut(s)	441
BseCI	ATCGAT	1 cut(s)	727
BseDI	CCNNGG	2 cut(s)	72, 559
BseGI	GGATG	4 cut(s)	177, 436, 532, 757
BseMII	CTCAG	5 cut(s)	23, 170, 257, 395, 633
BseNI	ACTGG	3 cut(s)	194, 601, 746
BseXI	GCAGC	4 cut(s)	28, 31, 352, 722
Bsh1236I	CGCG	1 cut(s)	577
BshFI	GGCC	3 cut(s)	57, 217, 491
BshTI	ACCGGT	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	727
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	2 cut(s)	51, 248
BsiSI	CCGG	4 cut(s)	27, 32, 58, 232
BslFI	GGGAC	3 cut(s)	151, 158, 252
BsmAI	GTCTC	3 cut(s)	41, 284, 747
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	3 cut(s)	151, 158, 252
BsnI	GGCC	3 cut(s)	57, 217, 491
BsoBI	CYCGRG	2 cut(s)	51, 248
Bsp1286I	GDGCHC	2 cut(s)	648, 657
Bsp143I	GATC	2 cut(s)	724, 728
BspACI	CCGC	2 cut(s)	363, 400
BspANI	GGCC	3 cut(s)	57, 217, 491
BspCNI	CTCAG	5 cut(s)	22, 169, 256, 394, 634
BspDI	ATCGAT	1 cut(s)	727
BspFNI	CGCG	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	56, 240
BspMAI	CTGCAG	1 cut(s)	370
BsrBI	CCGCTC	1 cut(s)	402
BsrFI	RCCGGY	2 cut(s)	31, 231
BsrI	ACTGG	3 cut(s)	194, 601, 746
BssAI	RCCGGY	2 cut(s)	31, 231
BssECI	CCNNGG	2 cut(s)	72, 559
BssMI	GATC	2 cut(s)	724, 728
BssT1I	CCWWGG	2 cut(s)	72, 559
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	5 cut(s)	139, 338, 506, 548, 679
Bst6I	CTCTTC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	6 cut(s)	24, 105, 195, 255, 275, 400
BstDEI	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
BstF5I	GGATG	4 cut(s)	177, 436, 532, 757
BstFNI	CGCG	1 cut(s)	577
BstKTI	GATC	2 cut(s)	727, 731
BstMAI	GTCTC	3 cut(s)	41, 284, 747
BstMBI	GATC	2 cut(s)	724, 728
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 620, 652
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	577
BstV1I	GCAGC	4 cut(s)	28, 31, 352, 722
Bsu15I	ATCGAT	1 cut(s)	727
BsuRI	GGCC	3 cut(s)	57, 217, 491
BsuTUI	ATCGAT	1 cut(s)	727
BtsCI	GGATG	4 cut(s)	177, 436, 532, 757
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	5 cut(s)	164, 313, 684, 720, 753
Cac8I	GCNNGC	6 cut(s)	24, 105, 195, 255, 275, 400
Cfr10I	RCCGGY	2 cut(s)	31, 231
Cfr13I	GGNCC	5 cut(s)	29, 55, 216, 239, 700
ClaI	ATCGAT	1 cut(s)	727
CpoI	CGGWCCG	1 cut(s)	29
CseI	GACGC	3 cut(s)	14, 266, 566
Csp6I	GTAC	2 cut(s)	151, 421
CspAI	ACCGGT	1 cut(s)	31
CspI	CGGWCCG	1 cut(s)	29
CviAII	CATG	1 cut(s)	551
CviQI	GTAC	2 cut(s)	151, 421
DdeI	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
DpnI	GATC	2 cut(s)	726, 730
DpnII	GATC	2 cut(s)	724, 728
DraIII	CACNNNGTG	1 cut(s)	159
DriI	GACNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	72
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	72, 559
Eco24I	GRGCYC	1 cut(s)	648
Eco47I	GGWCC	3 cut(s)	29, 239, 700
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	51, 248
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	72, 559
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	2 cut(s)	72, 559
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	1 cut(s)	554
FaiI	YATR	7 cut(s)	375, 377, 434, 498, 552, 705, 707
FaqI	GGGAC	3 cut(s)	151, 158, 252
FatI	CATG	1 cut(s)	550
FauI	CCCGC	1 cut(s)	407
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	17, 20, 363, 366, 711
FokI	GGATG	3 cut(s)	164, 423, 539
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	5 cut(s)	17, 20, 363, 366, 711
GluI	GCNGC	5 cut(s)	17, 20, 363, 366, 711
GsuI	CTGGAG	3 cut(s)	462, 681, 729
HaeIII	GGCC	3 cut(s)	57, 217, 491
HapII	CCGG	4 cut(s)	27, 32, 58, 232
HgaI	GACGC	3 cut(s)	14, 266, 566
Hin1II	CATG	1 cut(s)	554
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	4 cut(s)	49, 268, 357, 456
HpaII	CCGG	4 cut(s)	27, 32, 58, 232
HphI	GGTGA	2 cut(s)	46, 396
Hpy166II	GTNNAC	3 cut(s)	142, 153, 451
Hpy188I	TCNGA	2 cut(s)	292, 461
Hpy188III	TCNNGA	5 cut(s)	509, 581, 605, 660, 698
Hpy8I	GTNNAC	3 cut(s)	142, 153, 451
Hpy99I	CGWCG	2 cut(s)	143, 146
HpyAV	CCTTC	2 cut(s)	37, 661
HpyCH4III	ACNGT	5 cut(s)	139, 338, 506, 548, 679
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	4 cut(s)	332, 368, 629, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 620, 652
HpyF3I	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	1 cut(s)	554
Kzo9I	GATC	2 cut(s)	724, 728
LmnI	GCTCC	1 cut(s)	563
Lsp1109I	GCAGC	4 cut(s)	28, 31, 352, 722
MaeII	ACGT	1 cut(s)	651
MalI	GATC	2 cut(s)	726, 730
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	2 cut(s)	724, 728
MboII	GAAGA	6 cut(s)	49, 52, 89, 94, 127, 427
MhlI	GDGCHC	2 cut(s)	648, 657
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	2 cut(s)	519, 617
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	2 cut(s)	43, 366
MmeI	TCCRAC	1 cut(s)	662
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	4 cut(s)	27, 32, 58, 232
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	577
MwoI	GCNNNNNNNGC	3 cut(s)	109, 620, 652
NdeII	GATC	2 cut(s)	724, 728
NlaIII	CATG	1 cut(s)	554
NlaIV	GGNNCC	2 cut(s)	56, 240
NmeAIII	GCCGAG	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	268, 456
PfoI	TCCNGGA	1 cut(s)	439
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	18, 21, 364, 367, 712
PleI	GAGTC	2 cut(s)	43, 365
PpsI	GAGTC	2 cut(s)	43, 365
Ppu21I	YACGTR	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	56, 240
PspPI	GGNCC	5 cut(s)	29, 55, 216, 239, 700
PspPPI	RGGWCCY	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	2 cut(s)	152, 422
RsaNI	GTAC	2 cut(s)	151, 421
Rsr2I	CGGWCCG	1 cut(s)	29
RsrII	CGGWCCG	1 cut(s)	29
SalI	GTCGAC	1 cut(s)	140
SatI	GCNGC	5 cut(s)	17, 20, 363, 366, 711
Sau3AI	GATC	2 cut(s)	724, 728
Sau96I	GGNCC	5 cut(s)	29, 55, 216, 239, 700
SchI	GAGTC	2 cut(s)	43, 366
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	2 cut(s)	648, 657
SfcI	CTRYAG	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	248
SgrDI	CGTCGACG	1 cut(s)	140
SinI	GGWCC	3 cut(s)	29, 239, 700
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	519, 617
SsiI	CCGC	2 cut(s)	363, 400
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	2 cut(s)	72, 559
TaaI	ACNGT	5 cut(s)	139, 338, 506, 548, 679
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	3 cut(s)	141, 249, 727
TasI	AATT	2 cut(s)	519, 617
TatI	WGTACW	2 cut(s)	150, 420
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	268, 456
TscAI	CASTG	5 cut(s)	164, 313, 684, 727, 753
TseI	GCWGC	4 cut(s)	16, 19, 365, 710
TspRI	CASTG	5 cut(s)	164, 313, 684, 727, 753
VpaK11BI	GGWCC	3 cut(s)	29, 239, 700
XapI	RAATTY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.