Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002922

Physical Location & Seq

Genomic Coordinates Reverse (-)

13214072 .. 13215717

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCGGCACACTGACAAATCACATCATGATCACAAGGAAACTCATGGATTGCGAAATGATATCGATGAAAACACCCCGTTAGACGGTGTCAAAGCTCCGAATATGTTCGAGAGGGCGAAGGAGGAGTTTGAGGCCATAGTTGAAGCAATTCATCCCAAGAAAGAGTCTCCCACTCACGGAAAAAAGGACGAAAGTAAAAAGGAGTCGAAAAAACAGGAGAAAGCTGATTCTCTATCAGAAAATCATGTCAAGATAGCCAGTTTGATTGGGAAAGCCAAGGAGAAGATTGAGACAATGATGCACCATGAGAAGTCGCCGAAGAATCATGATAAAAAAACACACGAGAAGTCACCAAAGCATCATACCAAAGAAACTCACGGAAGGAGTGATGACATTGACGAGAGCATCCCAATCGATCATGTTAAGGGTCCGAATGTTTTTGAAAGAGCAAAGGAGGAAATCGAGGCCATTGTCGAAGCGATCCATCCCAAGAAAGAAGAGAAAAATCCGGTTTCCACACCTAAGAAGGAAGGTGGGTTTGGGGCGTCAATAGGAAGAGGTTTGGAGAAGGTGTGCTCCCCTCATGGAAACAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.48

Weight (kDa)

7.03

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17490 AT1G72690
fragaria_vesca	FvH4_1g07820 FvH4_6g33970
malus_domestica	MD02G1082200.v1.1 MD09G1190500.v1.1 MD13G1283500.v1.1 MD15G1209800.v1.1
prunus_persica	Prupe.3G046400_v2.0.a1 Prupe.7G206700_v2.0.a1
pyrus_communis	pycom02g06510 pycom09g10690 pycom15g18590
rosa_chinensis	RchiOBHm_Chr2g0093691 RchiOBHm_Chr2g0144001 RchiOBHm_Chr3g0459511
rosa_laevigata	RLG00000016429
rosa_multiflora	Rmu_sc0014811.1_g000014
rosa_roxburghii	Rroxscaffold_2G00101470 Rroxscaffold_2G00147890
rosa_rugosa	Rorug02G0039000
rosa_samantha	Rh2AG085400 Rh2AG437700 Rh2BG085800 Rh2BG445900 Rh2BG446200 Rh2CG088200 Rh2CG424300 Rh2DG083600 Rh2DG456100 Rh2DG456400 Rh3AG094900 Rh3CG099200 Rh3DG098600
rosa_wichuraiana	Rw0G013880 Rw2G035710 Rw2G035740 Rw3G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	83, 176
AgsI	TTSAA	2 cut(s)	143, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	2 cut(s)	95, 224
AluI	AGCT	2 cut(s)	95, 224
Alw21I	GWGCWC	1 cut(s)	578
Alw26I	GTCTC	2 cut(s)	171, 284
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	2 cut(s)	132, 465
Asp700I	GAANNNNTTC	2 cut(s)	104, 147
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	428
BauI	CACGAG	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	578
BccI	CCATC	1 cut(s)	492
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	171, 284
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	429
BmsI	GCATC	3 cut(s)	288, 367, 414
Bsa29I	ATCGAT	2 cut(s)	63, 414
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 176
Bse1I	ACTGG	1 cut(s)	258
BseCI	ATCGAT	2 cut(s)	63, 414
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	3 cut(s)	151, 405, 484
BseLI	CCNNNNNNNGG	2 cut(s)	83, 176
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	134, 467
BshVI	ATCGAT	2 cut(s)	63, 414
BsiHKAI	GWGCWC	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	83, 176
BsmAI	GTCTC	2 cut(s)	171, 284
BsnI	GGCC	2 cut(s)	134, 467
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp143I	GATC	3 cut(s)	28, 415, 480
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	134, 467
BspDI	ATCGAT	2 cut(s)	63, 414
BspHI	TCATGA	2 cut(s)	25, 325
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	28, 415, 480
BssNI	GRCGYC	1 cut(s)	545
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	2 cut(s)	492, 550
BstACI	GRCGYC	1 cut(s)	545
BstDEI	CTNAG	1 cut(s)	522
BstF5I	GGATG	3 cut(s)	151, 405, 484
BstKTI	GATC	3 cut(s)	31, 418, 483
BstMAI	GTCTC	2 cut(s)	171, 284
BstMBI	GATC	3 cut(s)	28, 415, 480
Bsu15I	ATCGAT	2 cut(s)	63, 414
BsuRI	GGCC	2 cut(s)	134, 467
BsuTUI	ATCGAT	2 cut(s)	63, 414
BtsCI	GGATG	3 cut(s)	151, 405, 484
BtsIMutI	CAGTG	1 cut(s)	9
CciI	TCATGA	2 cut(s)	25, 325
Cfr13I	GGNCC	1 cut(s)	428
ClaI	ATCGAT	2 cut(s)	63, 414
CseI	GACGC	1 cut(s)	534
CviAII	CATG	7 cut(s)	26, 44, 245, 305, 326, 419, 584
CviJI	RGCY	6 cut(s)	95, 134, 224, 257, 275, 467
CviKI_1	RGCY	6 cut(s)	95, 134, 224, 257, 275, 467
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	3 cut(s)	30, 417, 482
DpnII	GATC	3 cut(s)	28, 415, 480
Eam1104I	CTCTTC	2 cut(s)	492, 550
EarI	CTCTTC	2 cut(s)	492, 550
Eco130I	CCWWGG	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	7 cut(s)	29, 47, 248, 308, 329, 422, 587
FatI	CATG	7 cut(s)	25, 43, 244, 304, 325, 418, 583
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	3 cut(s)	138, 392, 471
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	134, 467
HapII	CCGG	1 cut(s)	509
HgaI	GACGC	1 cut(s)	534
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	7 cut(s)	29, 47, 248, 308, 329, 422, 587
HinfI	GANTC	4 cut(s)	164, 203, 227, 322
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	1 cut(s)	342
Hpy188I	TCNGA	3 cut(s)	99, 238, 432
Hpy188III	TCNNGA	4 cut(s)	26, 109, 250, 326
HpyAV	CCTTC	5 cut(s)	112, 375, 520, 524, 562
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	522
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	7 cut(s)	29, 47, 248, 308, 329, 422, 587
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	28, 415, 480
LmnI	GCTCC	2 cut(s)	100, 581
LpnPI	CCDG	3 cut(s)	200, 271, 522
LweI	GCATC	3 cut(s)	288, 367, 414
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	3 cut(s)	30, 417, 482
MboI	GATC	3 cut(s)	28, 415, 480
MboII	GAAGA	4 cut(s)	295, 331, 509, 567
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	1 cut(s)	147
MlyI	GAGTC	2 cut(s)	173, 212
MnlI	CCTC	7 cut(s)	105, 115, 124, 448, 457, 551, 591
MroXI	GAANNNNTTC	2 cut(s)	104, 147
MseI	TTAA	1 cut(s)	423
MspI	CCGG	1 cut(s)	509
NdeII	GATC	3 cut(s)	28, 415, 480
NlaIII	CATG	7 cut(s)	29, 47, 248, 308, 329, 422, 587
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	348
PagI	TCATGA	2 cut(s)	25, 325
PdmI	GAANNNNTTC	2 cut(s)	104, 147
PfeI	GAWTC	2 cut(s)	227, 322
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	172, 211
PpsI	GAGTC	2 cut(s)	172, 211
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	28, 415, 480
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	2 cut(s)	173, 212
SduI	GDGCHC	1 cut(s)	578
SetI	ASST	6 cut(s)	97, 226, 523, 535, 562, 573
SfaNI	GCATC	3 cut(s)	288, 367, 414
SinI	GGWCC	1 cut(s)	428
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	6 cut(s)	63, 108, 206, 414, 462, 474
TasI	AATT	1 cut(s)	147
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	227, 322
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	81, 140
TspGWI	ACGGA	2 cut(s)	192, 393
TspRI	CASTG	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	428
XmnI	GAANNNNTTC	2 cut(s)	104, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.