Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008043

Physical Location & Seq

Genomic Coordinates Reverse (-)

13326268 .. 13328064

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGCAGCTGCTCTTCCATGACTTCCCTTCTCATCCCACCTCCCACCCTTCCCCTCCAACTCAAGGAAGATGGGATTAGAGTCAGCACTCTACTTAGGAACCCATCATCTAAAATTGACCGGACCGGTCTGAGAAGTTGCAGACGTCACGGACGCTGTTCTGTGGCGAAAGCTAAGGCGACCGTTGAAGAAGATGTACTGGAGAAGCAATCAGTCGGTGCTCCGGACAAAAATGATTTTGGAGTTGTTAGTGTCCACCATGTCGGATTGCTGTGTGAAAACCTTGAAAGATCTCTCAGCTTTTACCAGAACATTTTGGGGCTTGAAATAAATGAGGCAAGGCCGCATGATAAGCTCCCCTACAGAGGTGCTTGGCTATGGGTTGGTTCAGAGATGATTCATCTCATGGAACTTCCAAATCCCGACCCTTTGACCGGAAGACCAGCTCATGGAGGCCGCGACCGCCATACTTGCATTGCAATCCGGGATGTGTCTAAGCTGAAAGCAATCCTCGACGATGCTGGTATTCCCTACACGCTGAGCAAGTCCGGGAGGCCGGCTATTTTCACGCGAGACCCGGATGCAAATGCTCTGGAGTTTACTCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

204

Amino Acids

22.39

Weight (kDa)

8.3

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57040
fragaria_vesca	FvH4_1g07980
malus_domestica	MD02G1084200.v1.1 MD15G1211500.v1.1
prunus_persica	Prupe.7G205300_v2.0.a1 Prupe.7G205300_v2.0.a1
pyrus_communis	pycom02g06700 pycom15g18810
rosa_chinensis	RchiOBHm_Chr2g0093891 RchiOBHm_Chr2g0094011
rosa_laevigata	RLG00000001330 RLG00000016443 RLG00000016445
rosa_multiflora	Rmu_sc0003027.1_g000004 Rmu_sc0017523.1_g000017
rosa_roxburghii	Rroxscaffold_2G00147560
rosa_rugosa	Rorug02G0040300
rosa_samantha	Rh2AG087000 Rh2BG087800 Rh2CG090100 Rh2DG085700 Rh2DG086900 Rh7AG429100 Rh7CG447900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccII	CGCG	2 cut(s)	459, 571
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	3 cut(s)	344, 457, 463
AcyI	GRCGYC	1 cut(s)	145
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	4 cut(s)	64, 365, 434, 449
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	188, 287, 326
AluBI	AGCT	6 cut(s)	9, 173, 300, 355, 446, 499
AluI	AGCT	6 cut(s)	9, 173, 300, 355, 446, 499
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	567
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	3 cut(s)	341, 454, 554
ApeKI	GCWGC	2 cut(s)	6, 9
AsiGI	ACCGGT	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	3 cut(s)	485, 550, 578
AvaII	GGWCC	1 cut(s)	123
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	65, 112
BcnI	CCSGG	3 cut(s)	485, 550, 578
BcoDI	GTCTC	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	361
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	4 cut(s)	7, 10, 344, 457
BlpI	GCTNAGC	1 cut(s)	539
BlsI	GCNGC	4 cut(s)	8, 11, 345, 458
Bme1390I	CCNGG	3 cut(s)	485, 550, 578
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	485, 550, 578
BmsI	GCATC	2 cut(s)	508, 571
BpiI	GAAGAC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	2 cut(s)	47, 588
BpuMI	CCSGG	3 cut(s)	485, 550, 578
BsaHI	GRCGYC	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	567
BsaWI	WCCGGW	4 cut(s)	120, 125, 223, 434
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 365, 434, 449
Bse118I	RCCGGY	2 cut(s)	125, 556
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	223
BseGI	GGATG	3 cut(s)	33, 493, 586
BseLI	CCNNNNNNNGG	4 cut(s)	64, 365, 434, 449
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	3 cut(s)	122, 310, 530
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	459, 571
Bsh1285I	CGRYCG	2 cut(s)	183, 463
BshFI	GGCC	3 cut(s)	343, 456, 556
BshTI	ACCGGT	1 cut(s)	125
BsiEI	CGRYCG	2 cut(s)	183, 463
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	8 cut(s)	121, 126, 224, 435, 484, 549, 557, 578
BslI	CCNNNNNNNGG	4 cut(s)	64, 365, 434, 449
BsmAI	GTCTC	1 cut(s)	567
BsnI	GGCC	3 cut(s)	343, 456, 556
Bso31I	GGTCTC	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	290
Bsp1720I	GCTNAGC	1 cut(s)	539
BspACI	CCGC	3 cut(s)	344, 457, 463
BspANI	GGCC	3 cut(s)	343, 456, 556
BspCNI	CTCAG	3 cut(s)	123, 309, 531
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	2 cut(s)	459, 571
BspLI	GGNNCC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	474
BsrFI	RCCGGY	2 cut(s)	125, 556
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	2 cut(s)	125, 556
BssMI	GATC	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	6 cut(s)	95, 131, 174, 296, 495, 539
BstF5I	GGATG	3 cut(s)	33, 493, 586
BstFNI	CGCG	2 cut(s)	459, 571
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	1 cut(s)	290
BstMCI	CGRYCG	2 cut(s)	183, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 462, 471
BstSCI	CCNGG	3 cut(s)	483, 548, 576
BstSFI	CTRYAG	1 cut(s)	361
BstUI	CGCG	2 cut(s)	459, 571
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	343, 456, 556
BtsCI	GGATG	3 cut(s)	33, 493, 586
Cac8I	GCNNGC	1 cut(s)	558
Cfr10I	RCCGGY	2 cut(s)	125, 556
Cfr13I	GGNCC	1 cut(s)	123
CpoI	CGGWCCG	1 cut(s)	123
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	197
CspAI	ACCGGT	1 cut(s)	125
CspI	CGGWCCG	1 cut(s)	123
CviAII	CATG	5 cut(s)	19, 260, 347, 406, 449
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	6 cut(s)	95, 131, 174, 296, 495, 539
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	123
FaeI	CATG	5 cut(s)	22, 263, 350, 409, 452
FaiI	YATR	7 cut(s)	20, 261, 348, 379, 407, 450, 468
FatI	CATG	5 cut(s)	18, 259, 346, 405, 448
Fnu4HI	GCNGC	4 cut(s)	7, 10, 344, 457
FokI	GGATG	3 cut(s)	20, 500, 593
Fsp4HI	GCNGC	4 cut(s)	7, 10, 344, 457
GluI	GCNGC	4 cut(s)	7, 10, 344, 457
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	343, 456, 556
HapII	CCGG	8 cut(s)	121, 126, 224, 435, 484, 549, 557, 578
HgaI	GACGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	5 cut(s)	22, 263, 350, 409, 452
HinfI	GANTC	2 cut(s)	81, 397
HpaII	CCGG	8 cut(s)	121, 126, 224, 435, 484, 549, 557, 578
Hpy166II	GTNNAC	2 cut(s)	256, 600
Hpy188I	TCNGA	3 cut(s)	132, 266, 391
Hpy188III	TCNNGA	3 cut(s)	224, 422, 593
Hpy8I	GTNNAC	2 cut(s)	256, 600
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	2 cut(s)	38, 59
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	141, 474, 479, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 462, 471
HpyF3I	CTNAG	6 cut(s)	95, 131, 174, 296, 495, 539
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	5 cut(s)	22, 263, 350, 409, 452
Kpn2I	TCCGGA	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	556
KroNI	GCCGGC	1 cut(s)	558
Kzo9I	GATC	1 cut(s)	290
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	226, 360
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	508, 571
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	5 cut(s)	6, 80, 200, 203, 450
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	82, 244
MnlI	CCTC	7 cut(s)	51, 65, 328, 359, 446, 521, 546
MroI	TCCGGA	1 cut(s)	223
MroNI	GCCGGC	1 cut(s)	556
MseI	TTAA	1 cut(s)	610
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	8 cut(s)	121, 126, 224, 435, 484, 549, 557, 578
MspR9I	CCNGG	3 cut(s)	485, 550, 578
MvnI	CGCG	2 cut(s)	459, 571
MwoI	GCNNNNNNNGC	3 cut(s)	352, 462, 471
NaeI	GCCGGC	1 cut(s)	558
NciI	CCSGG	3 cut(s)	485, 550, 578
NdeII	GATC	1 cut(s)	290
NgoMIV	GCCGGC	1 cut(s)	556
NlaIII	CATG	5 cut(s)	22, 263, 350, 409, 452
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	19
PdiI	GCCGGC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	449
PfoI	TCCNGGA	2 cut(s)	483, 548
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	8, 11, 345, 458
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	9
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
Rsr2I	CGGWCCG	1 cut(s)	123
RsrII	CGGWCCG	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	610
SatI	GCNGC	4 cut(s)	7, 10, 344, 457
Sau3AI	GATC	1 cut(s)	290
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	3 cut(s)	485, 550, 578
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	508, 571
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	62, 603
SmoI	CTYRAG	2 cut(s)	62, 603
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	3 cut(s)	344, 457, 463
StyD4I	CCNGG	3 cut(s)	483, 548, 576
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	513
TasI	AATT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	196
TauI	GCSGC	2 cut(s)	346, 459
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	6, 9
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	123
ZraI	GACGTC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.