Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002207

Physical Location & Seq

Genomic Coordinates Reverse (-)

3150660 .. 3154227

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTTGCCGAACCAACAGACTGTGGATTATCCGAGCTTCAAGCTCGTCATCGTTGGCGACGGAGGCACCGGAAAGACCACTTTCGTGAAGAGACATCTTACCGGAGAATTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTTCATCCTCTAGACTTCTTCACAAATTGTGGAAAGATCCGCTTTTACTGCTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGAGATGGTTACTACATCCATGGGCAATGTGCAATTATTATGTTTGATGTTACTGCAAGATTGACATACAAGAATGTTCCTACATGGCACCGTGATCTTTGCAGGGTTTGTGAGAACATACCCATTGTTCTCTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTTAAAGCTAAGCAGGTGACCTTTCATAGGAAGAAGAACCTGCAGTACTATGAGATATCTGCAAAGAGCAACTACAATTTCGAGAAACCTTTCCTCTACCTGGCCAGGAAGCTTGCAGGTGACACCAATCTTCATTTCGTCGAGTCTCCAGCTCTTGCTCCCCCAGAAGTCCAGATTGACATGGCTACTCAACAACAGCACGAGGCTGAGCTTGTAGCTGCAGCTGCCCAACCTCTTCCCGATGACGATGATGATGCATTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

221

Amino Acids

25.13

Weight (kDa)

6.38

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 138	1.1e-10	ADP-ribosylation factor family
Ras	PF00071	15 - 171	1.2e-47	Ras family
Roc	PF08477	15 - 128	2.9e-30	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19410 AT2G19410 AT2G19410 AT5G57035
fragaria_vesca	FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970
malus_domestica	MD02G1084100.v1.1
prunus_persica	Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1
pyrus_communis	pycom02g06680 pycom02g06690
rosa_chinensis	RchiOBHm_Chr1g0330911 RchiOBHm_Chr2g0093881 RchiOBHm_Chr2g0094001 RchiOBHm_Chr7g0232521
rosa_laevigata	RLG00000001329 RLG00000016442 RLG00000016444
rosa_multiflora	Rmu_sc0003027.1_g000005 Rmu_sc0017523.1_g000016 Rmu_ssc0000369.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147570 Rroxscaffold_2G00147700
rosa_rugosa	Rorug02G0040200 Rorug02G0040300
rosa_samantha	Rh2AG086900 Rh2AG087700 Rh2BG087700 Rh2CG090000 Rh2DG085600 Rh2DG086700 Rh2DG086800 Rh3CG371600 Rh7CG448000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	403, 506
Acc36I	ACCTGC	4 cut(s)	388, 403, 447, 506
AccB1I	GGYRCC	2 cut(s)	68, 321
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	2 cut(s)	211, 501
AcsI	RAATTY	2 cut(s)	110, 221
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	3 cut(s)	137, 426, 499
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	498, 503
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 518, 550
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	8 cut(s)	39, 46, 407, 511, 551, 610, 617, 623
AluI	AGCT	8 cut(s)	39, 46, 407, 511, 551, 610, 617, 623
Alw26I	GTCTC	2 cut(s)	88, 549
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	2 cut(s)	211, 501
ApeKI	GCWGC	3 cut(s)	617, 620, 623
ApoI	RAATTY	2 cut(s)	110, 221
Asp700I	GAANNNNTTC	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	427, 530
BalI	TGGCCA	2 cut(s)	213, 503
BanI	GGYRCC	2 cut(s)	68, 321
BauI	CACGAG	1 cut(s)	599
BbvI	GCAGC	3 cut(s)	604, 610, 632
BccI	CCATC	1 cut(s)	233
BcgI	CGANNNNNNTGC	1 cut(s)	635
BciT130I	CCWGG	2 cut(s)	500, 505
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	88, 549
BfaI	CTAG	2 cut(s)	158, 664
BfmI	CTRYAG	2 cut(s)	440, 618
BfuAI	ACCTGC	4 cut(s)	388, 403, 447, 506
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	618, 621, 624
BlpI	GCTNAGC	2 cut(s)	408, 606
BlsI	GCNGC	3 cut(s)	619, 622, 625
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	2 cut(s)	500, 505
BmiI	GGNNCC	2 cut(s)	70, 323
BmrFI	CCNGG	2 cut(s)	500, 505
BmsI	GCATC	1 cut(s)	643
BpmI	CTGGAG	1 cut(s)	531
Bpu1102I	GCTNAGC	2 cut(s)	408, 606
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	71, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 426, 499
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	500, 505
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	151, 249
BseLI	CCNNNNNNNGG	3 cut(s)	137, 426, 499
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	597
BseXI	GCAGC	3 cut(s)	604, 610, 632
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	2 cut(s)	213, 503
BshNI	GGYRCC	2 cut(s)	68, 321
BsiSI	CCGG	2 cut(s)	72, 105
BslI	CCNNNNNNNGG	3 cut(s)	137, 426, 499
BsmAI	GTCTC	2 cut(s)	88, 549
BsnI	GGCC	2 cut(s)	213, 503
Bsp143I	GATC	2 cut(s)	183, 328
Bsp1720I	GCTNAGC	2 cut(s)	408, 606
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	213, 503
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	70, 323
BspMAI	CTGCAG	2 cut(s)	444, 622
BspMI	ACCTGC	4 cut(s)	388, 403, 447, 506
BspPI	GGATC	1 cut(s)	178
BspT107I	GGYRCC	2 cut(s)	68, 321
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	183, 328
BssSI	CACGAG	1 cut(s)	599
BssT1I	CCWWGG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	500, 505
Bst4CI	ACNGT	2 cut(s)	25, 326
Bst6I	CTCTTC	2 cut(s)	86, 639
BstC8I	GCNNGC	2 cut(s)	211, 513
BstDEI	CTNAG	3 cut(s)	233, 408, 606
BstDSI	CCRYGG	1 cut(s)	253
BstEII	GGTNACC	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	151, 249
BstKTI	GATC	2 cut(s)	186, 331
BstMAI	GTCTC	2 cut(s)	88, 549
BstMBI	GATC	2 cut(s)	183, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 195, 623
BstNI	CCWGG	2 cut(s)	500, 505
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	498, 503
BstSFI	CTRYAG	2 cut(s)	440, 618
BstV1I	GCAGC	3 cut(s)	604, 610, 632
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	213, 503
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	151, 249
BveI	ACCTGC	4 cut(s)	388, 403, 447, 506
Cac8I	GCNNGC	2 cut(s)	211, 513
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	3 cut(s)	254, 318, 580
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	3 cut(s)	233, 408, 606
DpnI	GATC	2 cut(s)	185, 330
DpnII	GATC	2 cut(s)	183, 328
EaeI	YGGCCR	2 cut(s)	211, 501
Eam1104I	CTCTTC	2 cut(s)	86, 639
EarI	CTCTTC	2 cut(s)	86, 639
Eco130I	CCWWGG	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	498, 503
EcoRV	GATATC	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	257, 321, 583
FaiI	YATR	9 cut(s)	126, 255, 275, 301, 319, 353, 426, 450, 581
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	3 cut(s)	253, 317, 579
Fnu4HI	GCNGC	3 cut(s)	618, 621, 624
FokI	GGATG	2 cut(s)	138, 236
Fsp4HI	GCNGC	3 cut(s)	618, 621, 624
FspBI	CTAG	2 cut(s)	158, 664
GluI	GCNGC	3 cut(s)	618, 621, 624
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	2 cut(s)	213, 503
HapII	CCGG	2 cut(s)	72, 105
Hin1II	CATG	3 cut(s)	257, 321, 583
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	2 cut(s)	72, 105
HphI	GGTGA	2 cut(s)	427, 530
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	5 cut(s)	88, 158, 481, 571, 638
Hpy99I	CGWCG	2 cut(s)	65, 542
HpyCH4III	ACNGT	2 cut(s)	25, 326
HpyCH4V	TGCA	8 cut(s)	266, 290, 336, 442, 461, 515, 620, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 195, 623
HpyF3I	CTNAG	3 cut(s)	233, 408, 606
Hsp92II	CATG	3 cut(s)	257, 321, 583
Kzo9I	GATC	2 cut(s)	183, 328
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	3 cut(s)	604, 610, 632
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	2 cut(s)	158, 664
MaeIII	GTNAC	4 cut(s)	242, 283, 415, 518
MalI	GATC	2 cut(s)	185, 330
MboI	GATC	2 cut(s)	183, 328
MboII	GAAGA	8 cut(s)	103, 130, 157, 400, 442, 445, 521, 626
MflI	RGATCY	1 cut(s)	183
MlsI	TGGCCA	2 cut(s)	213, 503
MluCI	AATT	5 cut(s)	110, 172, 221, 267, 475
MluNI	TGGCCA	2 cut(s)	213, 503
MlyI	GAGTC	1 cut(s)	551
MnlI	CCTC	6 cut(s)	59, 139, 165, 503, 595, 642
Mox20I	TGGCCA	2 cut(s)	213, 503
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	2 cut(s)	213, 503
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	2 cut(s)	213, 503
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	2 cut(s)	72, 105
MspR9I	CCNGG	2 cut(s)	500, 505
MvaI	CCWGG	2 cut(s)	500, 505
MwoI	GCNNNNNNNGC	3 cut(s)	66, 195, 623
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	183, 328
NlaIII	CATG	3 cut(s)	257, 321, 583
NlaIV	GGNNCC	2 cut(s)	70, 323
NmuCI	GTSAC	2 cut(s)	415, 518
NsiI	ATGCAT	1 cut(s)	658
OliI	CACNNNNGTG	1 cut(s)	86
PaqCI	CACCTGC	2 cut(s)	403, 506
PdmI	GAANNNNTTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	619, 622, 625
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	498, 503
PspEI	GGTNACC	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	498, 503
PspN4I	GGNNCC	2 cut(s)	70, 323
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PstI	CTGCAG	2 cut(s)	444, 622
PsuI	RGATCY	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	618, 621, 624
Sau3AI	GATC	2 cut(s)	183, 328
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	500, 505
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	2 cut(s)	440, 618
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	110, 172, 221, 267, 475
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	2 cut(s)	158, 664
StyD4I	CCNGG	2 cut(s)	498, 503
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	25, 326
TaqI	TCGA	2 cut(s)	480, 540
TasI	AATT	5 cut(s)	110, 172, 221, 267, 475
TatI	WGTACW	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	2 cut(s)	415, 518
TseI	GCWGC	3 cut(s)	617, 620, 623
Tsp45I	GTSAC	2 cut(s)	415, 518
TspDTI	ATGAA	4 cut(s)	140, 141, 413, 521
TspGWI	ACGGA	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	424
XapI	RAATTY	2 cut(s)	110, 221
XbaI	TCTAGA	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	2 cut(s)	158, 664
ZrmI	AGTACT	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.