U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G19410 AT2G19410 AT2G19410 AT5G57035 |
| fragaria_vesca | FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 |
| malus_domestica | MD02G1084100.v1.1 |
| prunus_persica | Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 |
| pyrus_communis | pycom02g06680 pycom02g06690 |
| rosa_chinensis | RchiOBHm_Chr1g0330911 RchiOBHm_Chr2g0093881 RchiOBHm_Chr2g0094001 RchiOBHm_Chr7g0232521 |
| rosa_laevigata | RLG00000001329 RLG00000016442 RLG00000016444 |
| rosa_multiflora | Rmu_sc0003027.1_g000005 Rmu_sc0017523.1_g000016 Rmu_ssc0000369.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00147570 Rroxscaffold_2G00147700 |
| rosa_rugosa | Rorug02G0040200 Rorug02G0040300 |
| rosa_samantha | Rh2AG086900 Rh2AG087700 Rh2BG087700 Rh2CG090000 Rh2DG085600 Rh2DG086700 Rh2DG086800 Rh3CG371600 Rh7CG448000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1559 |
| AccBSI | CCGCTC | 2 cut(s) | 1129, 1935 |
| AccI | GTMKAC | 1 cut(s) | 477 |
| AccII | CGCG | 6 cut(s) | 563, 1112, 1163, 1205, 1961, 2364 |
| AccIII | TCCGGA | 1 cut(s) | 1513 |
| AclI | AACGTT | 2 cut(s) | 623, 949 |
| AcoI | YGGCCR | 1 cut(s) | 78 |
| AcsI | RAATTY | 3 cut(s) | 173, 2063, 2137 |
| AcuI | CTGAAG | 1 cut(s) | 1892 |
| AcvI | CACGTG | 1 cut(s) | 1489 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 138, 1489, 1520, 1618, 1807 |
| AflIII | ACRYGT | 3 cut(s) | 467, 830, 1486 |
| AgeI | ACCGGT | 3 cut(s) | 1275, 2107, 2296 |
| AgsI | TTSAA | 7 cut(s) | 367, 935, 955, 1054, 1450, 2116, 2326 |
| AjiI | CACGTC | 2 cut(s) | 190, 328 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1511, 1543 |
| Alw21I | GWGCWC | 3 cut(s) | 545, 1008, 2176 |
| Alw26I | GTCTC | 6 cut(s) | 93, 318, 579, 621, 873, 2123 |
| Alw44I | GTGCAC | 2 cut(s) | 541, 2172 |
| Ama87I | CYCGRG | 2 cut(s) | 1559, 1930 |
| Aor13HI | TCCGGA | 1 cut(s) | 1513 |
| AoxI | GGCC | 4 cut(s) | 78, 1647, 1750, 2012 |
| ApaLI | GTGCAC | 2 cut(s) | 541, 2172 |
| ApeKI | GCWGC | 2 cut(s) | 557, 2231 |
| ApoI | RAATTY | 3 cut(s) | 173, 2063, 2137 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1033, 1065, 2122, 2154 |
| AseI | ATTAAT | 2 cut(s) | 236, 524 |
| AsiGI | ACCGGT | 3 cut(s) | 1275, 2107, 2296 |
| AspLEI | GCGC | 1 cut(s) | 1117 |
| AspS9I | GGNCC | 1 cut(s) | 41 |
| AsuC2I | CCSGG | 2 cut(s) | 899, 1701 |
| AsuHPI | GGTGA | 9 cut(s) | 19, 885, 1156, 1222, 1265, 1568, 1676, 2286, 2311 |
| AsuII | TTCGAA | 1 cut(s) | 2141 |
| AvaI | CYCGRG | 2 cut(s) | 1559, 1930 |
| AvaII | GGWCC | 1 cut(s) | 41 |
| BaeGI | GKGCMC | 2 cut(s) | 545, 2176 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 417, 417, 450, 450 |
| BamHI | GGATCC | 2 cut(s) | 517, 788 |
| BanII | GRGCYC | 1 cut(s) | 1008 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 730, 762 |
| BbrPI | CACGTG | 1 cut(s) | 1489 |
| Bbv12I | GWGCWC | 3 cut(s) | 545, 1008, 2176 |
| BbvCI | CCTCAGC | 1 cut(s) | 801 |
| BbvI | GCAGC | 2 cut(s) | 569, 2218 |
| BccI | CCATC | 1 cut(s) | 2231 |
| BceAI | ACGGC | 6 cut(s) | 65, 116, 523, 1935, 2135, 2148 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 522, 556, 1153, 1187 |
| BciVI | GTATCC | 1 cut(s) | 1349 |
| BclI | TGATCA | 1 cut(s) | 1270 |
| BcnI | CCSGG | 2 cut(s) | 899, 1701 |
| BcoDI | GTCTC | 6 cut(s) | 93, 318, 579, 621, 873, 2123 |
| BfaI | CTAG | 8 cut(s) | 384, 411, 597, 750, 1418, 1754, 1991, 2315 |
| BfoI | RGCGCY | 1 cut(s) | 1118 |
| BfuI | GTATCC | 1 cut(s) | 1349 |
| BisI | GCNGC | 6 cut(s) | 558, 561, 594, 1113, 1398, 2232 |
| BlsI | GCNGC | 6 cut(s) | 559, 562, 595, 1114, 1399, 2233 |
| BmcAI | AGTACT | 3 cut(s) | 382, 1390, 1541 |
| Bme1390I | CCNGG | 2 cut(s) | 899, 1701 |
| Bme18I | GGWCC | 1 cut(s) | 41 |
| BmeT110I | CYCGRG | 2 cut(s) | 1559, 1930 |
| BmgBI | CACGTC | 2 cut(s) | 190, 328 |
| BmgT120I | GGNCC | 1 cut(s) | 41 |
| BmiI | GGNNCC | 4 cut(s) | 519, 790, 1674, 2220 |
| BmrFI | CCNGG | 2 cut(s) | 899, 1701 |
| BmrI | ACTGGG | 1 cut(s) | 598 |
| BmsI | GCATC | 2 cut(s) | 680, 2060 |
| BmuI | ACTGGG | 1 cut(s) | 598 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1873 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 995, 1027 |
| BpmI | CTGGAG | 2 cut(s) | 747, 1139 |
| Bpu10I | CCTNAGC | 1 cut(s) | 801 |
| Bpu14I | TTCGAA | 1 cut(s) | 2141 |
| BpuEI | CTTGAG | 2 cut(s) | 601, 2297 |
| BpuMI | CCSGG | 2 cut(s) | 899, 1701 |
| Bsa29I | ATCGAT | 1 cut(s) | 1251 |
| BsaAI | YACGTR | 3 cut(s) | 1489, 2171, 2247 |
| BsaI | GGTCTC | 1 cut(s) | 621 |
| BsaJI | CCNNGG | 5 cut(s) | 897, 1110, 1501, 1601, 2028 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 138, 1489, 1520, 1618, 1807 |
| Bse118I | RCCGGY | 5 cut(s) | 280, 1275, 1817, 2107, 2296 |
| Bse1I | ACTGG | 1 cut(s) | 593 |
| Bse3DI | GCAATG | 1 cut(s) | 1823 |
| BseAI | TCCGGA | 1 cut(s) | 1513 |
| BseCI | ATCGAT | 1 cut(s) | 1251 |
| BseDI | CCNNGG | 5 cut(s) | 897, 1110, 1501, 1601, 2028 |
| BseGI | GGATG | 2 cut(s) | 192, 1777 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 138, 1489, 1520, 1618, 1807 |
| BseMI | GCAATG | 1 cut(s) | 1823 |
| BseMII | CTCAG | 4 cut(s) | 639, 677, 815, 828 |
| BseNI | ACTGG | 1 cut(s) | 593 |
| BseRI | GAGGAG | 4 cut(s) | 311, 1487, 1490, 2231 |
| BseSI | GKGCMC | 2 cut(s) | 545, 2176 |
| BseXI | GCAGC | 2 cut(s) | 569, 2218 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| Bsh1236I | CGCG | 6 cut(s) | 563, 1112, 1163, 1205, 1961, 2364 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1953 |
| BshFI | GGCC | 4 cut(s) | 80, 1649, 1752, 2014 |
| BshTI | ACCGGT | 3 cut(s) | 1275, 2107, 2296 |
| BshVI | ATCGAT | 1 cut(s) | 1251 |
| BsiEI | CGRYCG | 1 cut(s) | 1953 |
| BsiHKAI | GWGCWC | 3 cut(s) | 545, 1008, 2176 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1559, 1930 |
| BsiWI | CGTACG | 2 cut(s) | 133, 2247 |
| BslFI | GGGAC | 2 cut(s) | 1279, 1987 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 138, 1489, 1520, 1618, 1807 |
| BsmAI | GTCTC | 6 cut(s) | 93, 318, 579, 621, 873, 2123 |
| BsmBI | CGTCTC | 2 cut(s) | 318, 2123 |
| BsmFI | GGGAC | 2 cut(s) | 1279, 1987 |
| BsmI | GAATGC | 1 cut(s) | 1219 |
| BsnI | GGCC | 4 cut(s) | 80, 1649, 1752, 2014 |
| Bso31I | GGTCTC | 1 cut(s) | 621 |
| BsoBI | CYCGRG | 2 cut(s) | 1559, 1930 |
| Bsp119I | TTCGAA | 1 cut(s) | 2141 |
| Bsp1286I | GDGCHC | 3 cut(s) | 545, 1008, 2176 |
| Bsp13I | TCCGGA | 1 cut(s) | 1513 |
| Bsp68I | TCGCGA | 1 cut(s) | 2364 |
| BspANI | GGCC | 4 cut(s) | 80, 1649, 1752, 2014 |
| BspCNI | CTCAG | 4 cut(s) | 640, 678, 814, 827 |
| BspDI | ATCGAT | 1 cut(s) | 1251 |
| BspEI | TCCGGA | 1 cut(s) | 1513 |
| BspFNI | CGCG | 6 cut(s) | 563, 1112, 1163, 1205, 1961, 2364 |
| BspLI | GGNNCC | 4 cut(s) | 519, 790, 1674, 2220 |
| BspQI | GCTCTTC | 2 cut(s) | 996, 1013 |
| BspT104I | TTCGAA | 1 cut(s) | 2141 |
| BspTNI | GGTCTC | 1 cut(s) | 621 |
| BsrBI | CCGCTC | 2 cut(s) | 1129, 1935 |
| BsrDI | GCAATG | 1 cut(s) | 1823 |
| BsrFI | RCCGGY | 5 cut(s) | 280, 1275, 1817, 2107, 2296 |
| BsrI | ACTGG | 1 cut(s) | 593 |
| BssAI | RCCGGY | 5 cut(s) | 280, 1275, 1817, 2107, 2296 |
| BssECI | CCNNGG | 5 cut(s) | 897, 1110, 1501, 1601, 2028 |
| BssNAI | GTATAC | 1 cut(s) | 478 |
| BssT1I | CCWWGG | 1 cut(s) | 1601 |
| Bst1107I | GTATAC | 1 cut(s) | 478 |
| Bst4CI | ACNGT | 7 cut(s) | 138, 349, 445, 615, 642, 976, 1688 |
| Bst6I | CTCTTC | 5 cut(s) | 48, 933, 996, 1013, 1086 |
| BstBAI | YACGTR | 3 cut(s) | 1489, 2171, 2247 |
| BstBI | TTCGAA | 1 cut(s) | 2141 |
| BstC8I | GCNNGC | 2 cut(s) | 1176, 1639 |
| BstDEI | CTNAG | 6 cut(s) | 648, 686, 801, 814, 1466, 2266 |
| BstDSI | CCRYGG | 1 cut(s) | 1110 |
| BstEII | GGTNACC | 1 cut(s) | 2002 |
| BstF5I | GGATG | 2 cut(s) | 192, 1777 |
| BstFNI | CGCG | 6 cut(s) | 563, 1112, 1163, 1205, 1961, 2364 |
| BstH2I | RGCGCY | 1 cut(s) | 1118 |
| BstHHI | GCGC | 1 cut(s) | 1117 |
| BstMAI | GTCTC | 6 cut(s) | 93, 318, 579, 621, 873, 2123 |
| BstMCI | CGRYCG | 1 cut(s) | 1953 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 566, 752, 1175, 2267 |
| BstNSI | RCATGY | 2 cut(s) | 471, 834 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1873 |
| BstPI | GGTNACC | 1 cut(s) | 2002 |
| BstSCI | CCNGG | 2 cut(s) | 897, 1699 |
| BstSLI | GKGCMC | 2 cut(s) | 545, 2176 |
| BstUI | CGCG | 6 cut(s) | 563, 1112, 1163, 1205, 1961, 2364 |
| BstV1I | GCAGC | 2 cut(s) | 569, 2218 |
| BstX2I | RGATCY | 4 cut(s) | 517, 788, 1879, 2086 |
| BstYI | RGATCY | 4 cut(s) | 517, 788, 1879, 2086 |
| BstZ17I | GTATAC | 1 cut(s) | 478 |
| Bsu15I | ATCGAT | 1 cut(s) | 1251 |
| BsuI | GTATCC | 1 cut(s) | 1349 |
| BsuRI | GGCC | 4 cut(s) | 80, 1649, 1752, 2014 |
| BsuTUI | ATCGAT | 1 cut(s) | 1251 |
| BtgI | CCRYGG | 1 cut(s) | 1110 |
| BtrI | CACGTC | 2 cut(s) | 190, 328 |
| BtsCI | GGATG | 2 cut(s) | 192, 1777 |
| BtsIMutI | CAGTG | 1 cut(s) | 437 |
| BtuMI | TCGCGA | 1 cut(s) | 2364 |
| Cac8I | GCNNGC | 2 cut(s) | 1176, 1639 |
| CfoI | GCGC | 1 cut(s) | 1117 |
| Cfr10I | RCCGGY | 5 cut(s) | 280, 1275, 1817, 2107, 2296 |
| Cfr13I | GGNCC | 1 cut(s) | 41 |
| Cfr42I | CCGCGG | 1 cut(s) | 1113 |
| ClaI | ATCGAT | 1 cut(s) | 1251 |
| CseI | GACGC | 1 cut(s) | 25 |
| CspAI | ACCGGT | 3 cut(s) | 1275, 2107, 2296 |
| CviAII | CATG | 4 cut(s) | 468, 572, 831, 1135 |
| DdeI | CTNAG | 6 cut(s) | 648, 686, 801, 814, 1466, 2266 |
| DraI | TTTAAA | 2 cut(s) | 982, 2052 |
| EaeI | YGGCCR | 1 cut(s) | 78 |
| Eam1104I | CTCTTC | 5 cut(s) | 48, 933, 996, 1013, 1086 |
| EarI | CTCTTC | 5 cut(s) | 48, 933, 996, 1013, 1086 |
| EciI | GGCGGA | 1 cut(s) | 65 |
| Ecl136II | GAGCTC | 1 cut(s) | 1006 |
| Eco130I | CCWWGG | 1 cut(s) | 1601 |
| Eco24I | GRGCYC | 1 cut(s) | 1008 |
| Eco31I | GGTCTC | 1 cut(s) | 621 |
| Eco47I | GGWCC | 1 cut(s) | 41 |
| Eco53kI | GAGCTC | 1 cut(s) | 1006 |
| Eco57I | CTGAAG | 1 cut(s) | 1892 |
| Eco72I | CACGTG | 1 cut(s) | 1489 |
| Eco88I | CYCGRG | 2 cut(s) | 1559, 1930 |
| Eco91I | GGTNACC | 1 cut(s) | 2002 |
| EcoICRI | GAGCTC | 1 cut(s) | 1006 |
| EcoO65I | GGTNACC | 1 cut(s) | 2002 |
| EcoRI | GAATTC | 1 cut(s) | 2137 |
| EcoT14I | CCWWGG | 1 cut(s) | 1601 |
| EcoT38I | GRGCYC | 1 cut(s) | 1008 |
| ErhI | CCWWGG | 1 cut(s) | 1601 |
| Esp3I | CGTCTC | 2 cut(s) | 318, 2123 |
| FaeI | CATG | 4 cut(s) | 471, 575, 834, 1138 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 694, 726 |
| FaqI | GGGAC | 2 cut(s) | 1279, 1987 |
| FatI | CATG | 4 cut(s) | 467, 571, 830, 1134 |
| FauI | CCCGC | 1 cut(s) | 1928 |
| FbaI | TGATCA | 1 cut(s) | 1270 |
| FblI | GTMKAC | 1 cut(s) | 477 |
| Fnu4HI | GCNGC | 6 cut(s) | 558, 561, 594, 1113, 1398, 2232 |
| FokI | GGATG | 2 cut(s) | 179, 1784 |
| FriOI | GRGCYC | 1 cut(s) | 1008 |
| Fsp4HI | GCNGC | 6 cut(s) | 558, 561, 594, 1113, 1398, 2232 |
| FspBI | CTAG | 8 cut(s) | 384, 411, 597, 750, 1418, 1754, 1991, 2315 |
| GlaI | GCGC | 1 cut(s) | 1116 |
| GluI | GCNGC | 6 cut(s) | 558, 561, 594, 1113, 1398, 2232 |
| GsuI | CTGGAG | 2 cut(s) | 747, 1139 |
| HaeII | RGCGCY | 1 cut(s) | 1118 |
| HaeIII | GGCC | 4 cut(s) | 80, 1649, 1752, 2014 |
| HgaI | GACGC | 1 cut(s) | 25 |
| HhaI | GCGC | 1 cut(s) | 1117 |
| Hin1II | CATG | 4 cut(s) | 471, 575, 834, 1138 |
| Hin6I | GCGC | 1 cut(s) | 1115 |
| HinP1I | GCGC | 1 cut(s) | 1115 |
| HincII | GTYRAC | 3 cut(s) | 645, 1917, 1980 |
| HindII | GTYRAC | 3 cut(s) | 645, 1917, 1980 |
| HindIII | AAGCTT | 1 cut(s) | 993 |
| HinfI | GANTC | 9 cut(s) | 498, 881, 1058, 1323, 2179, 2241, 2302, 2359, 2379 |
| HpaI | GTTAAC | 1 cut(s) | 1980 |
| HphI | GGTGA | 9 cut(s) | 19, 885, 1156, 1222, 1265, 1568, 1676, 2286, 2311 |
| Hpy188III | TCNNGA | 9 cut(s) | 580, 764, 909, 1447, 1514, 1792, 1841, 2363, 2376 |
| Hpy99I | CGWCG | 2 cut(s) | 129, 783 |
| HpyAV | CCTTC | 8 cut(s) | 79, 157, 916, 1132, 1313, 1343, 1660, 2150 |
| HpyCH4III | ACNGT | 7 cut(s) | 138, 349, 445, 615, 642, 976, 1688 |
| HpyCH4V | TGCA | 8 cut(s) | 116, 375, 543, 755, 1099, 1778, 1828, 2174 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 566, 752, 1175, 2267 |
| HpyF3I | CTNAG | 6 cut(s) | 648, 686, 801, 814, 1466, 2266 |
| Hsp92II | CATG | 4 cut(s) | 471, 575, 834, 1138 |
| HspAI | GCGC | 1 cut(s) | 1115 |
| Kpn2I | TCCGGA | 1 cut(s) | 1513 |
| Ksp22I | TGATCA | 1 cut(s) | 1270 |
| KspAI | GTTAAC | 1 cut(s) | 1980 |
| KspI | CCGCGG | 1 cut(s) | 1113 |
| LguI | GCTCTTC | 2 cut(s) | 996, 1013 |
| LmnI | GCTCC | 3 cut(s) | 1505, 2218, 2352 |
| Lsp1109I | GCAGC | 2 cut(s) | 569, 2218 |
| LweI | GCATC | 2 cut(s) | 680, 2060 |
| MaeI | CTAG | 8 cut(s) | 384, 411, 597, 750, 1418, 1754, 1991, 2315 |
| MaeIII | GTNAC | 9 cut(s) | 259, 624, 1306, 1688, 1765, 1789, 1925, 2002, 2299 |
| MbiI | CCGCTC | 2 cut(s) | 1129, 1935 |
| MfeI | CAATTG | 2 cut(s) | 1293, 1677 |
| MflI | RGATCY | 4 cut(s) | 517, 788, 1879, 2086 |
| MhlI | GDGCHC | 3 cut(s) | 545, 1008, 2176 |
| MlyI | GAGTC | 4 cut(s) | 875, 2188, 2296, 2388 |
| MmeI | TCCRAC | 3 cut(s) | 644, 1501, 1857 |
| MroI | TCCGGA | 1 cut(s) | 1513 |
| MspA1I | CMGCKG | 4 cut(s) | 64, 805, 1112, 1949 |
| MspR9I | CCNGG | 2 cut(s) | 899, 1701 |
| MunI | CAATTG | 2 cut(s) | 1293, 1677 |
| Mva1269I | GAATGC | 1 cut(s) | 1219 |
| MvnI | CGCG | 6 cut(s) | 563, 1112, 1163, 1205, 1961, 2364 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 566, 752, 1175, 2267 |
| NciI | CCSGG | 2 cut(s) | 899, 1701 |
| NlaIII | CATG | 4 cut(s) | 471, 575, 834, 1138 |
| NlaIV | GGNNCC | 4 cut(s) | 519, 790, 1674, 2220 |
| NmeAIII | GCCGAG | 1 cut(s) | 2099 |
| NmuCI | GTSAC | 3 cut(s) | 1688, 1789, 2299 |
| NruI | TCGCGA | 1 cut(s) | 2364 |
| NspI | RCATGY | 2 cut(s) | 471, 834 |
| NspV | TTCGAA | 1 cut(s) | 2141 |
| PaeR7I | CTCGAG | 1 cut(s) | 1559 |
| PciI | ACATGT | 2 cut(s) | 467, 830 |
| PciSI | GCTCTTC | 2 cut(s) | 996, 1013 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2138 |
| PctI | GAATGC | 1 cut(s) | 1219 |
| PfeI | GAWTC | 5 cut(s) | 498, 1058, 1323, 2241, 2359 |
| Pfl23II | CGTACG | 2 cut(s) | 133, 2247 |
| PinAI | ACCGGT | 3 cut(s) | 1275, 2107, 2296 |
| PkrI | GCNGC | 6 cut(s) | 559, 562, 595, 1114, 1399, 2233 |
| PleI | GAGTC | 4 cut(s) | 875, 2187, 2296, 2387 |
| PmaCI | CACGTG | 1 cut(s) | 1489 |
| PmlI | CACGTG | 1 cut(s) | 1489 |
| PpsI | GAGTC | 4 cut(s) | 875, 2187, 2296, 2387 |
| Ppu21I | YACGTR | 3 cut(s) | 1489, 2171, 2247 |
| PscI | ACATGT | 2 cut(s) | 467, 830 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1873 |
| PshBI | ATTAAT | 2 cut(s) | 236, 524 |
| Psp124BI | GAGCTC | 1 cut(s) | 1008 |
| Psp1406I | AACGTT | 2 cut(s) | 623, 949 |
| PspCI | CACGTG | 1 cut(s) | 1489 |
| PspEI | GGTNACC | 1 cut(s) | 2002 |
| PspLI | CGTACG | 2 cut(s) | 133, 2247 |
| PspN4I | GGNNCC | 4 cut(s) | 519, 790, 1674, 2220 |
| PspPI | GGNCC | 1 cut(s) | 41 |
| PspXI | VCTCGAGB | 1 cut(s) | 1559 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 409, 441 |
| PsuI | RGATCY | 4 cut(s) | 517, 788, 1879, 2086 |
| PvuII | CAGCTG | 2 cut(s) | 64, 805 |
| RruI | TCGCGA | 1 cut(s) | 2364 |
| SacI | GAGCTC | 1 cut(s) | 1008 |
| SacII | CCGCGG | 1 cut(s) | 1113 |
| SapI | GCTCTTC | 2 cut(s) | 996, 1013 |
| SatI | GCNGC | 6 cut(s) | 558, 561, 594, 1113, 1398, 2232 |
| Sau96I | GGNCC | 1 cut(s) | 41 |
| ScaI | AGTACT | 3 cut(s) | 382, 1390, 1541 |
| SchI | GAGTC | 4 cut(s) | 875, 2188, 2296, 2388 |
| ScrFI | CCNGG | 2 cut(s) | 899, 1701 |
| SduI | GDGCHC | 3 cut(s) | 545, 1008, 2176 |
| SfaNI | GCATC | 2 cut(s) | 680, 2060 |
| Sfr274I | CTCGAG | 1 cut(s) | 1559 |
| Sfr303I | CCGCGG | 1 cut(s) | 1113 |
| SfuI | TTCGAA | 1 cut(s) | 2141 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2296 |
| SgrBI | CCGCGG | 1 cut(s) | 1113 |
| SinI | GGWCC | 1 cut(s) | 41 |
| SlaI | CTCGAG | 1 cut(s) | 1559 |
| SmlI | CTYRAG | 3 cut(s) | 580, 1559, 2276 |
| SmoI | CTYRAG | 3 cut(s) | 580, 1559, 2276 |
| SspI | AATATT | 2 cut(s) | 226, 1049 |
| SspMI | CTAG | 8 cut(s) | 384, 411, 597, 750, 1418, 1754, 1991, 2315 |
| SstI | GAGCTC | 1 cut(s) | 1008 |
| StyD4I | CCNGG | 2 cut(s) | 897, 1699 |
| StyI | CCWWGG | 1 cut(s) | 1601 |
| TaaI | ACNGT | 7 cut(s) | 138, 349, 445, 615, 642, 976, 1688 |
| TaqII | GACCGA | 1 cut(s) | 396 |
| TatI | WGTACW | 4 cut(s) | 380, 971, 1388, 1539 |
| TauI | GCSGC | 4 cut(s) | 563, 596, 1115, 1400 |
| TfiI | GAWTC | 5 cut(s) | 498, 1058, 1323, 2241, 2359 |
| TscAI | CASTG | 1 cut(s) | 444 |
| TseFI | GTSAC | 3 cut(s) | 1688, 1789, 2299 |
| TseI | GCWGC | 2 cut(s) | 557, 2231 |
| Tsp45I | GTSAC | 3 cut(s) | 1688, 1789, 2299 |
| TspDTI | ATGAA | 3 cut(s) | 357, 1071, 1151 |
| TspGWI | ACGGA | 2 cut(s) | 796, 1784 |
| TspRI | CASTG | 1 cut(s) | 444 |
| VneI | GTGCAC | 2 cut(s) | 541, 2172 |
| VpaK11BI | GGWCC | 1 cut(s) | 41 |
| VspI | ATTAAT | 2 cut(s) | 236, 524 |
| XapI | RAATTY | 3 cut(s) | 173, 2063, 2137 |
| XceI | RCATGY | 2 cut(s) | 471, 834 |
| XhoI | CTCGAG | 1 cut(s) | 1559 |
| XmiI | GTMKAC | 1 cut(s) | 477 |
| XspI | CTAG | 8 cut(s) | 384, 411, 597, 750, 1418, 1754, 1991, 2315 |
| ZrmI | AGTACT | 3 cut(s) | 382, 1390, 1541 |