Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002207

Physical Location & Seq

Genomic Coordinates Forward (+)

6686766 .. 6690046

Gene Structure 3281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGATCCAGAGGCAGCAAAGCATTTGAAGGCCAGGAAAGAGATTGAGGAGGCAAAAGTTGTGCTTGCTAAAGAGGCTTATGAGAGGCAAGTTGCTGAATTAAATGCCCTGAAAGAGTCGACAGGGAAAAAGGAATTTGTTGATGCACTCTTCTCATGTGACAATAGGTACAGGAGATACAGTAGGAAGGAAATAGAGATAGCAACAAACTTCTTCTCAGAGACTAATGTGATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGCAGTCTTGATCAAACCCTGGTAGCTGTTAAGGTTCTTCGACCTGATGCAGTTAAGAAGAAGGAGGAGTTTCTGAAAGAGGTTGAAATTCTTAGTCAGCTACATCATCCTAACATAGTTTTGCTTCTTGGAGCCTGTCCAGAGATCGGTTGCCTGGTCTATGAATACCTGGAAAATGGGAGCTTGGAAGATTATATCTCCCACCGCCCGACTGGAAAACCATCTCTCCCTTGGACTGTTAGGTTCAGGATAATTTTTGAAATAGCGTGTGGACTTGCATTCTTACACAACTCAAAGACAGACCCTATTGTGCATCGAGATCTAAAACCAGGTAATGTCTTACTGGACAGAAACTACTCGAGCAAAATTGGGGACGTTGGGCTGGCTAAACTCCTTACAGACATCGTGCCTGACAACATAACGGAGTACAGAGAATCAATTATTGCTGGTACAGTGTTTTACGTGGATCCAGAGTATCAGAGAACTGGCACAATTAGACCCAAATCGGATTTATACGCATTTGGGGTCATTATCCTCCAAGTATTGACAGCACGGCATCCAAATAGGCTTATATATATTGTGGAAAATGCAATTGCAAATGGTTCTTTTGCCGACCTTTTAGATGAGTCGGTCACAGATTGGCCACTAGAAGAAACAGAGGAGTTGGCTCAACTTGCATTAAGTTGTTCAAAGCTTAGATGCAGGGATAGACCGGATCTTGAAACTGAAGTTCTGCCAGTTCTCAAAAGACTCGTTGATATTGCAGATCCTAGTTCTAAGATTGAGAGAAACCATATTGATGCACCAAGCCACTACTATTGTCCAATACTTCAGGAAATTATGGACGACCCACACATTTCTGCCGATGGCTTTACTTATGAGTACAGAGCAATCAGAGCATGGCTTGACAAACACAATGTATCCCCAGTGACAAGGCTTAGACTTCAGCATTCAGGGTTGACTCCTAACCATACATTGCGTTCAGCTATACAAGAATGGAGGTCACGCGTGACACACTCTACCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr U-box Usp

Protein Analysis

431

Amino Acids

48.88

Weight (kDa)

6.0

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	73 - 327	4.5e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	75 - 329	9.6e-41	Protein tyrosine and serine/threonine kinase
U-box	PF04564	356 - 423	1e-16	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19410 AT2G19410 AT2G19410 AT5G57035
fragaria_vesca	FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970
malus_domestica	MD02G1084100.v1.1
prunus_persica	Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1
pyrus_communis	pycom02g06680 pycom02g06690
rosa_chinensis	RchiOBHm_Chr1g0330911 RchiOBHm_Chr2g0093881 RchiOBHm_Chr2g0094001 RchiOBHm_Chr7g0232521
rosa_laevigata	RLG00000001329 RLG00000016442 RLG00000016444
rosa_multiflora	Rmu_sc0003027.1_g000005 Rmu_sc0017523.1_g000016 Rmu_ssc0000369.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147570 Rroxscaffold_2G00147700
rosa_rugosa	Rorug02G0040200 Rorug02G0040300
rosa_samantha	Rh2AG086900 Rh2AG087700 Rh2BG087700 Rh2CG090000 Rh2DG085600 Rh2DG086700 Rh2DG086800 Rh3CG371600 Rh7CG448000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	119
AccII	CGCG	1 cut(s)	1272
AciI	CCGC	2 cut(s)	469, 1287
AclWI	GGATC	5 cut(s)	12, 725, 738, 987, 1025
AcoI	YGGCCR	1 cut(s)	905
AcsI	RAATTY	2 cut(s)	134, 351
AcuI	CTGAAG	3 cut(s)	1011, 1079, 1193
AfaI	GTAC	4 cut(s)	170, 692, 715, 1148
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	1270
AgsI	TTSAA	5 cut(s)	28, 350, 524, 954, 986
AjnI	CCWGG	5 cut(s)	32, 282, 417, 432, 592
AluBI	AGCT	5 cut(s)	290, 364, 447, 958, 1250
AluI	AGCT	5 cut(s)	290, 364, 447, 958, 1250
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	5 cut(s)	12, 725, 738, 987, 1025
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	2 cut(s)	30, 905
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	134, 351
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	622
BalI	TGGCCA	1 cut(s)	907
BamHI	GGATCC	2 cut(s)	4, 730
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	493, 1124
BceAI	ACGGC	1 cut(s)	833
BciT130I	CCWGG	5 cut(s)	34, 284, 419, 434, 594
BciVI	GTATCC	1 cut(s)	1195
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	911, 1035
BfuI	GTATCC	1 cut(s)	1195
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	5 cut(s)	34, 284, 419, 434, 594
BmeT110I	CYCGRG	1 cut(s)	622
BmiI	GGNNCC	3 cut(s)	6, 397, 732
BmrFI	CCNGG	5 cut(s)	34, 284, 419, 434, 594
BmrI	ACTGGG	1 cut(s)	1184
BmsI	GCATC	6 cut(s)	133, 301, 586, 829, 953, 1054
BmuI	ACTGGG	1 cut(s)	1184
BsaAI	YACGTR	1 cut(s)	727
BsaJI	CCNNGG	2 cut(s)	282, 494
BsaWI	WCCGGW	1 cut(s)	976
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 474, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	5 cut(s)	481, 612, 754, 1001, 1190
Bse3DI	GCAATG	1 cut(s)	1238
BseBI	CCWGG	5 cut(s)	34, 284, 419, 434, 594
BseDI	CCNNGG	2 cut(s)	282, 494
BseGI	GGATG	2 cut(s)	370, 820
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	1238
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	5 cut(s)	481, 612, 754, 1001, 1190
BseRI	GAGGAG	3 cut(s)	62, 344, 938
BseXI	GCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	1272
BshFI	GGCC	2 cut(s)	32, 907
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	977
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	650
BsmI	GAATGC	2 cut(s)	542, 1213
BsnI	GGCC	2 cut(s)	32, 907
BsoBI	CYCGRG	1 cut(s)	622
Bsp143I	GATC	7 cut(s)	4, 274, 408, 583, 730, 979, 1030
BspACI	CCGC	2 cut(s)	469, 1287
BspANI	GGCC	2 cut(s)	32, 907
BspCNI	CTCAG	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	1272
BspLI	GGNNCC	3 cut(s)	6, 397, 732
BspPI	GGATC	5 cut(s)	12, 725, 738, 987, 1025
BsrDI	GCAATG	1 cut(s)	1238
BsrI	ACTGG	5 cut(s)	481, 612, 754, 1001, 1190
BssECI	CCNNGG	2 cut(s)	282, 494
BssMI	GATC	7 cut(s)	4, 274, 408, 583, 730, 979, 1030
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	5 cut(s)	34, 284, 419, 434, 594
Bst4CI	ACNGT	3 cut(s)	182, 502, 718
Bst6I	CTCTTC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	66, 648
BstDEI	CTNAG	5 cut(s)	217, 356, 959, 1041, 1202
BstF5I	GGATG	2 cut(s)	370, 820
BstFNI	CGCG	1 cut(s)	1272
BstKTI	GATC	7 cut(s)	7, 277, 411, 586, 733, 982, 1033
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	7 cut(s)	4, 274, 408, 583, 730, 979, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 938, 1160
BstNI	CCWGG	5 cut(s)	34, 284, 419, 434, 594
BstSCI	CCNGG	5 cut(s)	32, 282, 417, 432, 592
BstUI	CGCG	1 cut(s)	1272
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	5 cut(s)	4, 583, 730, 979, 1030
BstYI	RGATCY	5 cut(s)	4, 583, 730, 979, 1030
BsuI	GTATCC	1 cut(s)	1195
BsuRI	GGCC	2 cut(s)	32, 907
BtsCI	GGATG	2 cut(s)	370, 820
BtsIMutI	CAGTG	2 cut(s)	723, 1197
Cac8I	GCNNGC	2 cut(s)	66, 648
CsiI	ACCWGGT	1 cut(s)	592
Csp6I	GTAC	4 cut(s)	169, 691, 714, 1147
CspCI	CAANNNNNGTGG	2 cut(s)	1064, 1099
CviAII	CATG	2 cut(s)	156, 1164
CviQI	GTAC	4 cut(s)	169, 691, 714, 1147
DdeI	CTNAG	5 cut(s)	217, 356, 959, 1041, 1202
DpnI	GATC	7 cut(s)	6, 276, 410, 585, 732, 981, 1032
DpnII	GATC	7 cut(s)	4, 274, 408, 583, 730, 979, 1030
EaeI	YGGCCR	1 cut(s)	905
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	494
Eco57I	CTGAAG	3 cut(s)	1011, 1079, 1193
Eco88I	CYCGRG	1 cut(s)	622
EcoRII	CCWGG	5 cut(s)	32, 282, 417, 432, 592
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	2 cut(s)	159, 1167
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	2 cut(s)	155, 1163
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	357, 807
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	911, 1035
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	32, 907
HapII	CCGG	1 cut(s)	977
Hin1II	CATG	2 cut(s)	159, 1167
HincII	GTYRAC	2 cut(s)	120, 1224
HindII	GTYRAC	2 cut(s)	120, 1224
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	5 cut(s)	116, 698, 890, 1014, 1225
HpaII	CCGG	1 cut(s)	977
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	4 cut(s)	120, 259, 536, 1224
Hpy188I	TCNGA	5 cut(s)	220, 339, 744, 772, 1160
Hpy188III	TCNNGA	8 cut(s)	8, 272, 404, 511, 581, 734, 983, 1097
Hpy8I	GTNNAC	4 cut(s)	120, 259, 536, 1224
HpyAV	CCTTC	4 cut(s)	22, 181, 233, 319
HpyCH4III	ACNGT	3 cut(s)	182, 502, 718
HpyCH4IV	ACGT	2 cut(s)	639, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 938, 1160
HpyF3I	CTNAG	5 cut(s)	217, 356, 959, 1041, 1202
HpySE526I	ACGT	2 cut(s)	639, 726
Hsp92II	CATG	2 cut(s)	159, 1167
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	7 cut(s)	4, 274, 408, 583, 730, 979, 1030
LmnI	GCTCC	2 cut(s)	395, 444
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	6 cut(s)	133, 301, 586, 829, 953, 1054
MabI	ACCWGGT	1 cut(s)	592
MaeI	CTAG	2 cut(s)	911, 1035
MaeII	ACGT	2 cut(s)	639, 726
MaeIII	GTNAC	5 cut(s)	158, 895, 1192, 1266, 1273
MalI	GATC	7 cut(s)	6, 276, 410, 585, 732, 981, 1032
MboI	GATC	7 cut(s)	4, 274, 408, 583, 730, 979, 1030
MboII	GAAGA	6 cut(s)	142, 205, 293, 334, 464, 926
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	5 cut(s)	4, 583, 730, 979, 1030
MlsI	TGGCCA	1 cut(s)	907
MluCI	AATT	9 cut(s)	98, 134, 351, 516, 630, 702, 756, 855, 1101
MluI	ACGCGT	1 cut(s)	1270
MluNI	TGGCCA	1 cut(s)	907
MlyI	GAGTC	4 cut(s)	125, 899, 1008, 1219
Mox20I	TGGCCA	1 cut(s)	907
MscI	TGGCCA	1 cut(s)	907
MseI	TTAA	4 cut(s)	101, 294, 318, 944
MslI	CAYNNNNRTG	1 cut(s)	1062
Msp20I	TGGCCA	1 cut(s)	907
MspI	CCGG	1 cut(s)	977
MspR9I	CCNGG	5 cut(s)	34, 284, 419, 434, 594
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	2 cut(s)	542, 1213
MvaI	CCWGG	5 cut(s)	34, 284, 419, 434, 594
MvnI	CGCG	1 cut(s)	1272
MwoI	GCNNNNNNNGC	3 cut(s)	74, 938, 1160
NdeII	GATC	7 cut(s)	4, 274, 408, 583, 730, 979, 1030
NlaIII	CATG	2 cut(s)	159, 1167
NlaIV	GGNNCC	3 cut(s)	6, 397, 732
NmuCI	GTSAC	5 cut(s)	158, 895, 1192, 1266, 1273
PaeR7I	CTCGAG	1 cut(s)	622
PctI	GAATGC	2 cut(s)	542, 1213
PfeI	GAWTC	1 cut(s)	698
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	4 cut(s)	124, 898, 1008, 1219
PpsI	GAGTC	4 cut(s)	124, 898, 1008, 1219
Ppu21I	YACGTR	1 cut(s)	727
Psp6I	CCWGG	5 cut(s)	32, 282, 417, 432, 592
PspGI	CCWGG	5 cut(s)	32, 282, 417, 432, 592
PspN4I	GGNNCC	3 cut(s)	6, 397, 732
PspXI	VCTCGAGB	1 cut(s)	622
PsuI	RGATCY	5 cut(s)	4, 583, 730, 979, 1030
RsaI	GTAC	4 cut(s)	170, 692, 715, 1148
RsaNI	GTAC	4 cut(s)	169, 691, 714, 1147
RseI	CAYNNNNRTG	1 cut(s)	1062
SalI	GTCGAC	1 cut(s)	118
SaqAI	TTAA	4 cut(s)	101, 294, 318, 944
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	7 cut(s)	4, 274, 408, 583, 730, 979, 1030
SchI	GAGTC	4 cut(s)	125, 899, 1008, 1219
ScrFI	CCNGG	5 cut(s)	34, 284, 419, 434, 594
SexAI	ACCWGGT	1 cut(s)	592
SfaNI	GCATC	6 cut(s)	133, 301, 586, 829, 953, 1054
Sfr274I	CTCGAG	1 cut(s)	622
SlaI	CTCGAG	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	1062
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	9 cut(s)	98, 134, 351, 516, 630, 702, 756, 855, 1101
SsiI	CCGC	2 cut(s)	469, 1287
SspMI	CTAG	2 cut(s)	911, 1035
StyD4I	CCNGG	5 cut(s)	32, 282, 417, 432, 592
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	3 cut(s)	182, 502, 718
TaiI	ACGT	2 cut(s)	642, 729
TaqI	TCGA	4 cut(s)	119, 304, 580, 623
TaqII	GACCGA	1 cut(s)	883
TasI	AATT	9 cut(s)	98, 134, 351, 516, 630, 702, 756, 855, 1101
TatI	WGTACW	2 cut(s)	690, 1146
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	4 cut(s)	101, 294, 318, 944
Tru9I	TTAA	4 cut(s)	101, 294, 318, 944
TscAI	CASTG	2 cut(s)	723, 1197
TseFI	GTSAC	5 cut(s)	158, 895, 1192, 1266, 1273
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	5 cut(s)	158, 895, 1192, 1266, 1273
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	723, 1197
XapI	RAATTY	2 cut(s)	134, 351
XcmI	CCANNNNNNNNNTGG	2 cut(s)	473, 492
XhoI	CTCGAG	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	2 cut(s)	911, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.