Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002207

Physical Location & Seq

Genomic Coordinates Forward (+)

7366008 .. 7376427

Gene Structure 10420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACTATACTTACAGACGTTGGTGGTGGTGGGGGAATTTCACCTGGGAAGTTGAGGACTATGCTACTTGGGGTGGAGAAGAAGAGGAAGGAGCTGGAAGATTTTGAATCTACTTTCAATTTGAGATCTCAAGCTTCTGAATTTGAACGGACTGTCCACATCCGCCTGATCCTGATAGAGCATATGAGTCCAACTCAGCCTCCAAAAACACGCTCTCACAGCTCTGTATGGCCAATTGCTGTGGCTAAAGAGGCTCATCTTACCCCACAAGCAAAACGTTCGATACACGAAAAGACTGCTCCAAGGACCATCTTACATCAGTTCTTAATCTTAAAGATGAGGTATCCATTGCTACTGCTGGAGCTGTGGACAGATGAGTCAGTCACAGATGGACCACTAGAAGAAACAGAGGAGTTGGCTCAACTAGCATTAAGGTGTTCAAAGCTTAGATGCAGGGATCGACCAGATCTTGAAACTGAAGTAGTTCTGCCAGTTCTCAAAAGACTCGTTGATATTGCAGATCCTAGTTCTAAGATTGAGAGAAACCATTTTGATGCACCAAGCCACTACTATTGTCCAATACTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr U-box Usp

Protein Analysis

196

Amino Acids

22.35

Weight (kDa)

7.1

Isoelectric Point (pI)

69.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19410 AT2G19410 AT2G19410 AT5G57035
fragaria_vesca	FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970
malus_domestica	MD02G1084100.v1.1
prunus_persica	Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1
pyrus_communis	pycom02g06680 pycom02g06690
rosa_chinensis	RchiOBHm_Chr1g0330911 RchiOBHm_Chr2g0093881 RchiOBHm_Chr2g0094001 RchiOBHm_Chr7g0232521
rosa_laevigata	RLG00000001329 RLG00000016442 RLG00000016444
rosa_multiflora	Rmu_sc0003027.1_g000005 Rmu_sc0017523.1_g000016 Rmu_ssc0000369.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147570 Rroxscaffold_2G00147700
rosa_rugosa	Rorug02G0040200 Rorug02G0040300
rosa_samantha	Rh2AG086900 Rh2AG087700 Rh2BG087700 Rh2CG090000 Rh2DG085600 Rh2DG086700 Rh2DG086800 Rh3CG371600 Rh7CG448000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	376
AciI	CCGC	1 cut(s)	163
AclI	AACGTT	1 cut(s)	277
AclWI	GGATC	3 cut(s)	163, 465, 515
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	36, 140
AcuI	CTGAAG	2 cut(s)	498, 569
AgsI	TTSAA	5 cut(s)	107, 118, 146, 441, 473
AjnI	CCWGG	1 cut(s)	43
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	5 cut(s)	94, 134, 222, 364, 445
AluI	AGCT	5 cut(s)	94, 134, 222, 364, 445
AlwI	GGATC	3 cut(s)	163, 465, 515
AoxI	GGCC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	36, 140
Asp700I	GAANNNNTTC	1 cut(s)	483
AspS9I	GGNCC	2 cut(s)	306, 392
AsuHPI	GGTGA	1 cut(s)	33
AvaII	GGWCC	2 cut(s)	306, 392
BalI	TGGCCA	1 cut(s)	232
BccI	CCATC	2 cut(s)	317, 383
BcgI	CGANNNNNNTGC	4 cut(s)	261, 278, 295, 312
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	354
BfaI	CTAG	3 cut(s)	398, 425, 525
BfuI	GTATCC	1 cut(s)	354
BglII	AGATCT	2 cut(s)	125, 466
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	2 cut(s)	306, 392
BmgT120I	GGNCC	2 cut(s)	306, 392
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	440, 544
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpmI	CTGGAG	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	44, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	44, 302
BseGI	GGATG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	125, 168, 457, 466, 520
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	208
BspPI	GGATC	3 cut(s)	163, 465, 515
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	44, 302
BssMI	GATC	5 cut(s)	125, 168, 457, 466, 520
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	195, 446, 531
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	5 cut(s)	128, 171, 460, 469, 523
BstMBI	GATC	5 cut(s)	125, 168, 457, 466, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 251, 425
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstX2I	RGATCY	3 cut(s)	125, 466, 520
BstYI	RGATCY	3 cut(s)	125, 466, 520
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	306, 392
CspCI	CAANNNNNGTGG	4 cut(s)	222, 257, 554, 589
DdeI	CTNAG	3 cut(s)	195, 446, 531
DpnI	GATC	5 cut(s)	127, 170, 459, 468, 522
DpnII	GATC	5 cut(s)	125, 168, 457, 466, 520
DrdI	GACNNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	306, 392
Eco57I	CTGAAG	2 cut(s)	498, 569
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaiI	YATR	5 cut(s)	8, 62, 183, 185, 229
FauNDI	CATATG	1 cut(s)	183
FokI	GGATG	1 cut(s)	146
FspBI	CTAG	3 cut(s)	398, 425, 525
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	232
HindIII	AAGCTT	2 cut(s)	132, 443
HinfI	GANTC	4 cut(s)	107, 187, 377, 504
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	2 cut(s)	157, 369
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	172, 470
Hpy8I	GTNNAC	2 cut(s)	157, 369
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	18, 277
HpyCH4V	TGCA	3 cut(s)	453, 518, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 251, 425
HpyF3I	CTNAG	3 cut(s)	195, 446, 531
HpySE526I	ACGT	2 cut(s)	18, 277
Kzo9I	GATC	5 cut(s)	125, 168, 457, 466, 520
LmnI	GCTCC	3 cut(s)	91, 304, 361
LpnPI	CCDG	9 cut(s)	30, 57, 80, 179, 185, 344, 439, 477, 504
LweI	GCATC	2 cut(s)	440, 544
MaeI	CTAG	3 cut(s)	398, 425, 525
MaeII	ACGT	2 cut(s)	18, 277
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	5 cut(s)	127, 170, 459, 468, 522
MboI	GATC	5 cut(s)	125, 168, 457, 466, 520
MboII	GAAGA	4 cut(s)	91, 94, 110, 413
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	3 cut(s)	125, 466, 520
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	4 cut(s)	36, 118, 140, 234
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	3 cut(s)	196, 386, 498
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	6 cut(s)	48, 78, 210, 244, 333, 403
Mox20I	TGGCCA	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	3 cut(s)	326, 332, 431
MslI	CAYNNNNRTG	2 cut(s)	433, 552
Msp20I	TGGCCA	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	219, 251, 425
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	5 cut(s)	125, 168, 457, 466, 520
NmuCI	GTSAC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	107
PleI	GAGTC	3 cut(s)	195, 385, 498
PpsI	GAGTC	3 cut(s)	195, 385, 498
Psp1406I	AACGTT	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	306, 392
PsuI	RGATCY	3 cut(s)	125, 466, 520
RseI	CAYNNNNRTG	2 cut(s)	433, 552
SaqAI	TTAA	3 cut(s)	326, 332, 431
Sau3AI	GATC	5 cut(s)	125, 168, 457, 466, 520
Sau96I	GGNCC	2 cut(s)	306, 392
SchI	GAGTC	3 cut(s)	196, 386, 498
ScrFI	CCNGG	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	440, 544
SinI	GGWCC	2 cut(s)	306, 392
SmiMI	CAYNNNNRTG	2 cut(s)	433, 552
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	4 cut(s)	36, 118, 140, 234
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	3 cut(s)	398, 425, 525
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	2 cut(s)	21, 280
TaqI	TCGA	2 cut(s)	281, 460
TasI	AATT	4 cut(s)	36, 118, 140, 234
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	3 cut(s)	326, 332, 431
Tru9I	TTAA	3 cut(s)	326, 332, 431
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	306, 392
XapI	RAATTY	2 cut(s)	36, 140
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	3 cut(s)	398, 425, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.