pycom02g06680

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
4626403 .. 4629640
3238 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06680.6

Sequence Viewer

Length: 1581 bp
ATGTCGTCCGTGGCCGTGGCGGTTAACAGCGGCGGGAGCCCGGGAAGCCGACGCGCCGTGAATTGGGCTGCGGAGAACCTCTTACCCACGGCAGATCGCTTCGTTTTAGTCCACGTCATCCCCAAAATCAACTCAATCCCAACTCCATCAGGAGATCACATCCCGATCACAGAGCTGGATGCAAATTTGGTGGCAACGTATGTGAAGGACCAGAAACAAAAGTTTGAGGAAGTTTTTATTCCGTTTAAGAAGAAATGCAAAAATAATAAGAAGGTGGAAACATTGGTGTTAGAGGATGATGATCCTGCAAATGGGATTCTAAGGTTCATATCTGAATCAGGGATCGATTGTTTAGTGCTCGGTGCCTACTCTTCAAATTGCGTTACCAGGAAACTGAAAGGACAGGGTGTATCACCAATTGTGCTGAGAGGTGCTCCCGACACTTGCGAAGTTTATTCCATTTCCAAACATAGAATCATCACAAAATCAGATAATCCTTCTTCTGCTTGTGAGACTAGATCTGCTGGCCAGATGTCTACTCTAAAAAACCGAAAGGGAAGTTCAAGTGATATCAATAAACAGATAAGCAGGGTTCATTCTTCCTATGTAGAAACCAGATTTCATGAAGCTTATGGAGCATCTACAATGTCAGACCTTAGTTACTTAAGTTCTGAAGCATTCACGCGTATGAGCATTTCCTCAAGTGTTAGTGTAGATCAGGAAAGGAATCATCAAAACTTGGGAGATAACCTGGATATTAGTTCTTTTAAGGATCGAAGTTCCTCGGGTTCTTCAATTACTGAGCTGTCACATGTGCAGACGCAGGTAGAACAGTTGCGTCTGGAATTGCAAAATACTATTGCCATGTACAAACAAGCTTGTGAAGAGCTGGTCCATGCCCAAAGCAAGGTGCAATTACTTTCTTCTGAATGCCTTGATGAAACAAAAAGAGTGAATGCTGCCCTTGAAAGTGAAGAAATGTTGAGAAAAATTGCTGCAGAAGAGAAAGCAAAGCATTTGGAGGCACTGAAGGAGATTGAGGAGGCCAAAGTTCTGCTTGCTAAAGAGGCTTATGAGAGGCAAATGGCCGAGCTGACTGCCATGAAAGAGTCCTCAGAGAAAAATAAATTAGTTGATGCACTCTTCTCAAGTGACAGGAGGTATAGGAGATACAGTAGGAATGAAATAGAGGTAGCAACGAGTTTCTTCTCAGAGGCTAATGTGATTGGTGAGGGAGGATATGGAAAAGTTTACAAATGCAGTCTTGATCGCACCCCGGTAGCTGTTAAGGTTCTTCGACCTGATGCAGTTGATAAGAAAGAGGAGTTTCTGAAAGAGGTTGAAATTCTTAGTCAGCTACACCATCCGAATATAGTTTTGCTGCTTGGTGCTTGTCCTGAGATTGGTTGCCTGGTCTATGAATACTTGGAAAATGGAAGCTTAGAAGATTATGTCTACTGCCAAAATGGAAAACCGCCACTCCCTTGGACTATTCGGTTCCATATAGTTTTTGAAGTAGCTTGTGGGCTTGCATTCTTACACAACTCTAAGCTGGATCCTATTGTGCATCGATCGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

58.53

Weight (kDa)

6.21

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 814
AccB1I GGYRCC 1 cut(s) 362
AccI GTMKAC 2 cut(s) 536, 1455
AccII CGCG 2 cut(s) 54, 685
AciI CCGC 5 cut(s) 20, 30, 33, 71, 1475
AclWI GGATC 5 cut(s) 296, 350, 780, 1550, 1563
AcoI YGGCCR 3 cut(s) 12, 526, 1086
AcsI RAATTY 2 cut(s) 184, 1344
AcuI CTGAAG 2 cut(s) 693, 1049
AfaI GTAC 1 cut(s) 869
AfiI CCNNNNNNNGG 4 cut(s) 63, 311, 907, 1403
AflII CTTAAG 1 cut(s) 664
AflIII ACRYGT 2 cut(s) 683, 811
AgsI TTSAA 6 cut(s) 375, 564, 795, 968, 1343, 1514
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 3 cut(s) 386, 750, 1410
Alw21I GWGCWC 2 cut(s) 360, 436
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 5 cut(s) 296, 350, 780, 1550, 1563
Ama87I CYCGRG 2 cut(s) 40, 784
AoxI GGCC 4 cut(s) 12, 526, 1044, 1086
ApeKI GCWGC 4 cut(s) 68, 959, 995, 1381
ApoI RAATTY 2 cut(s) 184, 1344
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 208, 892
AsuC2I CCSGG 3 cut(s) 41, 42, 1277
AsuHPI GGTGA 2 cut(s) 405, 1241
AvaI CYCGRG 2 cut(s) 40, 784
AvaII GGWCC 2 cut(s) 208, 892
BalI TGGCCA 1 cut(s) 528
BamHI GGATCC 1 cut(s) 1555
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 360, 436
BbvI GCAGC 4 cut(s) 55, 946, 982, 1368
BccI CCATC 2 cut(s) 154, 1371
BceAI ACGGC 2 cut(s) 41, 105
BcgI CGANNNNNNTGC 2 cut(s) 1079, 1113
BciT130I CCWGG 3 cut(s) 388, 752, 1412
BcnI CCSGG 3 cut(s) 41, 42, 1277
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 996
BfrI CTTAAG 1 cut(s) 664
BfuAI ACCTGC 1 cut(s) 814
BglII AGATCT 1 cut(s) 518
BisI GCNGC 5 cut(s) 31, 69, 960, 996, 1382
BlsI GCNGC 5 cut(s) 32, 70, 961, 997, 1383
Bme1390I CCNGG 6 cut(s) 41, 42, 388, 752, 1277, 1412
Bme18I GGWCC 2 cut(s) 208, 892
BmeT110I CYCGRG 2 cut(s) 40, 784
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 208, 892
BmiI GGNNCC 4 cut(s) 38, 364, 1499, 1557
BmrFI CCNGG 6 cut(s) 41, 42, 388, 752, 1277, 1412
BmsI GCATC 5 cut(s) 169, 647, 1126, 1294, 1576
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpuEI CTTGAG 2 cut(s) 685, 1132
BpuMI CCSGG 3 cut(s) 41, 42, 1277
Bsa29I ATCGAT 3 cut(s) 345, 1570, 1574
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 7 cut(s) 9, 15, 40, 87, 783, 1275, 1484
BsaXI ACNNNNNCTCC 4 cut(s) 1159, 1189, 1464, 1494
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 311, 907, 1403
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 3 cut(s) 388, 752, 1412
BseCI ATCGAT 3 cut(s) 345, 1570, 1574
BseDI CCNNGG 7 cut(s) 9, 15, 40, 87, 783, 1275, 1484
BseGI GGATG 5 cut(s) 117, 159, 184, 301, 1363
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 4 cut(s) 63, 311, 907, 1403
BseMII CTCAG 5 cut(s) 416, 792, 1128, 1224, 1389
BseRI GAGGAG 2 cut(s) 1055, 1337
BseXI GCAGC 4 cut(s) 55, 946, 982, 1368
BsgI GTGCAG 1 cut(s) 836
Bsh1236I CGCG 2 cut(s) 54, 685
Bsh1285I CGRYCG 1 cut(s) 1574
BshFI GGCC 4 cut(s) 14, 528, 1046, 1088
BshNI GGYRCC 1 cut(s) 362
BshVI ATCGAT 3 cut(s) 345, 1570, 1574
BsiEI CGRYCG 1 cut(s) 1574
BsiHKAI GWGCWC 2 cut(s) 360, 436
BsiHKCI CYCGRG 2 cut(s) 40, 784
BsiSI CCGG 2 cut(s) 41, 1277
BslI CCNNNNNNNGG 4 cut(s) 63, 311, 907, 1403
BsmAI GTCTC 1 cut(s) 506
BsmI GAATGC 4 cut(s) 677, 935, 961, 1532
BsnI GGCC 4 cut(s) 14, 528, 1046, 1088
BsoBI CYCGRG 2 cut(s) 40, 784
Bsp1286I GDGCHC 3 cut(s) 41, 360, 436
Bsp1407I TGTACA 1 cut(s) 867
BspACI CCGC 5 cut(s) 20, 30, 33, 71, 1475
BspANI GGCC 4 cut(s) 14, 528, 1046, 1088
BspCNI CTCAG 5 cut(s) 417, 793, 1127, 1223, 1390
BspDI ATCGAT 3 cut(s) 345, 1570, 1574
BspFNI CGCG 2 cut(s) 54, 685
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 4 cut(s) 38, 364, 1499, 1557
BspMAI CTGCAG 1 cut(s) 1000
BspMI ACCTGC 1 cut(s) 814
BspPI GGATC 5 cut(s) 296, 350, 780, 1550, 1563
BspQI GCTCTTC 1 cut(s) 879
BspT107I GGYRCC 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 664
BsrGI TGTACA 1 cut(s) 867
BssECI CCNNGG 7 cut(s) 9, 15, 40, 87, 783, 1275, 1484
BssT1I CCWWGG 1 cut(s) 1484
Bst2UI CCWGG 3 cut(s) 388, 752, 1412
Bst4CI ACNGT 2 cut(s) 834, 1175
Bst6I CTCTTC 4 cut(s) 376, 879, 996, 1148
BstAFI CTTAAG 1 cut(s) 664
BstAUI TGTACA 1 cut(s) 867
BstC8I GCNNGC 3 cut(s) 526, 1059, 1530
BstDSI CCRYGG 3 cut(s) 9, 15, 87
BstF5I GGATG 5 cut(s) 117, 159, 184, 301, 1363
BstFNI CGCG 2 cut(s) 54, 685
BstHHI GCGC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 506
BstMCI CGRYCG 1 cut(s) 1574
BstMWI GCNNNNNNNGC 4 cut(s) 36, 45, 635, 1067
BstNI CCWGG 3 cut(s) 388, 752, 1412
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 6 cut(s) 39, 40, 386, 750, 1275, 1410
BstSFI CTRYAG 1 cut(s) 996
BstUI CGCG 2 cut(s) 54, 685
BstV1I GCAGC 4 cut(s) 55, 946, 982, 1368
BstX2I RGATCY 2 cut(s) 518, 1555
BstXI CCANNNNNNTGG 1 cut(s) 1485
BstYI RGATCY 2 cut(s) 518, 1555
Bsu15I ATCGAT 3 cut(s) 345, 1570, 1574
BsuRI GGCC 4 cut(s) 14, 528, 1046, 1088
BsuTUI ATCGAT 3 cut(s) 345, 1570, 1574
BtgI CCRYGG 3 cut(s) 9, 15, 87
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 5 cut(s) 117, 159, 184, 301, 1363
BtsIMutI CAGTG 1 cut(s) 1025
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 3 cut(s) 526, 1059, 1530
CciI TCATGA 1 cut(s) 622
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 208, 892
Cfr9I CCCGGG 1 cut(s) 40
ClaI ATCGAT 3 cut(s) 345, 1570, 1574
CseI GACGC 3 cut(s) 60, 827, 829
Csp6I GTAC 1 cut(s) 868
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 5 cut(s) 623, 812, 865, 896, 1102
CviQI GTAC 1 cut(s) 868
EaeI YGGCCR 3 cut(s) 12, 526, 1086
Eam1104I CTCTTC 4 cut(s) 376, 879, 996, 1148
EarI CTCTTC 4 cut(s) 376, 879, 996, 1148
Eco130I CCWWGG 1 cut(s) 1484
Eco24I GRGCYC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 208, 892
Eco57I CTGAAG 2 cut(s) 693, 1049
Eco88I CYCGRG 2 cut(s) 40, 784
EcoRII CCWGG 3 cut(s) 386, 750, 1410
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 1484
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 1484
FaeI CATG 5 cut(s) 626, 815, 868, 899, 1105
FalI AAGNNNNNCTT 2 cut(s) 1041, 1073
FatI CATG 5 cut(s) 622, 811, 864, 895, 1101
FauI CCCGC 1 cut(s) 26
FblI GTMKAC 2 cut(s) 536, 1455
Fnu4HI GCNGC 5 cut(s) 31, 69, 960, 996, 1382
FokI GGATG 5 cut(s) 104, 146, 191, 308, 1350
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 5 cut(s) 31, 69, 960, 996, 1382
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 55
GluI GCNGC 5 cut(s) 31, 69, 960, 996, 1382
HaeIII GGCC 4 cut(s) 14, 528, 1046, 1088
HapII CCGG 2 cut(s) 41, 1277
HgaI GACGC 3 cut(s) 60, 827, 829
HhaI GCGC 1 cut(s) 56
Hin1II CATG 5 cut(s) 626, 815, 868, 899, 1105
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 3 cut(s) 627, 876, 1438
HinfI GANTC 5 cut(s) 316, 335, 474, 727, 1109
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 2 cut(s) 41, 1277
HphI GGTGA 2 cut(s) 405, 1241
Hpy166II GTNNAC 5 cut(s) 25, 112, 537, 1252, 1456
Hpy188I TCNGA 9 cut(s) 334, 490, 652, 673, 928, 1117, 1213, 1332, 1368
Hpy188III TCNNGA 8 cut(s) 150, 163, 437, 623, 719, 842, 1265, 1397
Hpy8I GTNNAC 5 cut(s) 25, 112, 537, 1252, 1456
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 199, 265, 507, 1024
HpyCH4III ACNGT 2 cut(s) 834, 1175
HpyCH4IV ACGT 2 cut(s) 114, 197
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 45, 635, 1067
HpySE526I ACGT 2 cut(s) 114, 197
Hsp92II CATG 5 cut(s) 626, 815, 868, 899, 1105
HspAI GCGC 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 25
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 3 cut(s) 36, 439, 635
Lsp1109I GCAGC 4 cut(s) 55, 946, 982, 1368
LweI GCATC 5 cut(s) 169, 647, 1126, 1294, 1576
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 114, 197
MaeIII GTNAC 4 cut(s) 382, 659, 807, 1151
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 2 cut(s) 518, 1555
MhlI GDGCHC 3 cut(s) 41, 360, 436
MlsI TGGCCA 1 cut(s) 528
MluI ACGCGT 1 cut(s) 683
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 1 cut(s) 1118
Mox20I TGGCCA 1 cut(s) 528
MscI TGGCCA 1 cut(s) 528
MseI TTAA 5 cut(s) 24, 246, 665, 768, 1287
MslI CAYNNNNRTG 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 30
MspCI CTTAAG 1 cut(s) 664
MspI CCGG 2 cut(s) 41, 1277
MspR9I CCNGG 6 cut(s) 41, 42, 388, 752, 1277, 1412
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 4 cut(s) 677, 935, 961, 1532
MvaI CCWGG 3 cut(s) 388, 752, 1412
MvnI CGCG 2 cut(s) 54, 685
MwoI GCNNNNNNNGC 4 cut(s) 36, 45, 635, 1067
NciI CCSGG 3 cut(s) 41, 42, 1277
NlaIII CATG 5 cut(s) 626, 815, 868, 899, 1105
NlaIV GGNNCC 4 cut(s) 38, 364, 1499, 1557
NmeAIII GCCGAG 1 cut(s) 1114
NmuCI GTSAC 2 cut(s) 807, 1151
NspI RCATGY 1 cut(s) 815
PagI TCATGA 1 cut(s) 622
PciI ACATGT 1 cut(s) 811
PciSI GCTCTTC 1 cut(s) 879
PctI GAATGC 4 cut(s) 677, 935, 961, 1532
PfeI GAWTC 4 cut(s) 316, 335, 474, 727
PkrI GCNGC 5 cut(s) 32, 70, 961, 997, 1383
Ple19I CGATCG 1 cut(s) 1574
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
PscI ACATGT 1 cut(s) 811
Psp6I CCWGG 3 cut(s) 386, 750, 1410
PspGI CCWGG 3 cut(s) 386, 750, 1410
PspN4I GGNNCC 4 cut(s) 38, 364, 1499, 1557
PspPI GGNCC 2 cut(s) 208, 892
PstI CTGCAG 1 cut(s) 1000
PsuI RGATCY 2 cut(s) 518, 1555
PvuI CGATCG 1 cut(s) 1574
RsaI GTAC 1 cut(s) 869
RsaNI GTAC 1 cut(s) 868
RseI CAYNNNNRTG 1 cut(s) 686
SapI GCTCTTC 1 cut(s) 879
SaqAI TTAA 5 cut(s) 24, 246, 665, 768, 1287
SatI GCNGC 5 cut(s) 31, 69, 960, 996, 1382
Sau96I GGNCC 2 cut(s) 208, 892
SchI GAGTC 1 cut(s) 1118
ScrFI CCNGG 6 cut(s) 41, 42, 388, 752, 1277, 1412
SduI GDGCHC 3 cut(s) 41, 360, 436
SfaNI GCATC 5 cut(s) 169, 647, 1126, 1294, 1576
SfcI CTRYAG 1 cut(s) 996
SinI GGWCC 2 cut(s) 208, 892
SmaI CCCGGG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 686
SmlI CTYRAG 3 cut(s) 664, 700, 1147
SmoI CTYRAG 3 cut(s) 664, 700, 1147
SsiI CCGC 5 cut(s) 20, 30, 33, 71, 1475
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 6 cut(s) 39, 40, 386, 750, 1275, 1410
StyI CCWWGG 1 cut(s) 1484
TaaI ACNGT 2 cut(s) 834, 1175
TaiI ACGT 2 cut(s) 117, 200
TaqI TCGA 5 cut(s) 345, 775, 1297, 1570, 1574
TatI WGTACW 1 cut(s) 867
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 4 cut(s) 316, 335, 474, 727
Tru1I TTAA 5 cut(s) 24, 246, 665, 768, 1287
Tru9I TTAA 5 cut(s) 24, 246, 665, 768, 1287
TscAI CASTG 1 cut(s) 1032
TseFI GTSAC 2 cut(s) 807, 1151
TseI GCWGC 4 cut(s) 68, 959, 995, 1381
Tsp45I GTSAC 2 cut(s) 807, 1151
TspDTI ATGAA 8 cut(s) 316, 584, 611, 639, 954, 1118, 1197, 1434
TspGWI ACGGA 1 cut(s) 231
TspMI CCCGGG 1 cut(s) 40
TspRI CASTG 1 cut(s) 1032
Vha464I CTTAAG 1 cut(s) 664
VpaK11BI GGWCC 2 cut(s) 208, 892
XapI RAATTY 2 cut(s) 184, 1344
XceI RCATGY 1 cut(s) 815
XmaI CCCGGG 1 cut(s) 40
XmiI GTMKAC 2 cut(s) 536, 1455
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.