Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002207

Physical Location & Seq

Genomic Coordinates Forward (+)

14150537 .. 14152995

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001329

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGTCAGATCTTAGTTATATAAGTTCTGAAGCATTTACACGTATGGAGTTTAGGGCAAATGCTAGTGTGGATCATGAGAGGAATCATCAGAACTTGCAAGAGAACCTTGAGATTATTTCTTTCCAGCGTGGAAGTTCCTCAATTGCTTCAAACATTGAGCAGTCATATGTGCAGGTTGAAGTGGAAAAGTTGCGTGCAGAATTGCAAAATACTCTTGGCATGTACAAACGAGCTTGTGAAGAGCTGGTACATGCCCAAAGCAAGGTCCAACTACTTTCTTCCGAATGCCTTGAAGAAGCAAGAAGAGTGAATGCTGCTCTTCAAAGTGAGGGAACTTTGAGAAAAATTGCTGCTGAAGAGGCAGCAAAGCATTTGAAGGCCAGGAAAGAGATTGAGGAGGCAAAAGTTCTGCTCTCTAAAGAGGCTTATGAGAGGCAAGTTGCTGAATTAAATGCCCTGAAAGAGTCGACAGGGAAAAAGGAATTTGTTGATGCACTCTTCTCATGTGACAATAGGTACAGAAGATACAGTAGGAAGGAAATAGAGATAGCAACAAACTTCTTCTCAGAGACTAATGTGATTGGTGAAGGAGGATATGGAAAAGTTTACAAGTGCAGTCTTGATCAAACCCCGGTAGCTGTTAAGGTTCTTCGACCTGATGCAGTTGAGAAGAAAGAGGAGTTTCTGAAAGAGCTACATCATCCTAACATAGTTTTGCTTCTTGGAGCCTGTCCAGAGATCGGTTGCCTGGTCTATGAATACCTGGAAAATGGGAACTTGGAAGATTATATCTCCCACCGCCAGAATGGAAAACCATCTCTCCCTTGGACTGTTAGGTTCAGGATAATTTTTGAAATAGCGTGTGGGCTTGCATTCTTACACAACTCAAAGACAGACCCTATTAGCAAAATTGGGGACGTTGGGCTGGCTAAACTCATTACAGACATCGTGCCTGACAACATAACGGAGTACAGAGAATCAATTATTGCTGGTGCACTCTTTTACATGGATCCAGAGTATCAGAGAACTGGCACAATTAGACCCAAATCGGATTTATACGCATTTGGGGTCATTATCCTCCAACTATTGACAGCACGGCATCCAAATAGGCTTATATACATTGTGGAAAATGCAATTACAAATGGTTCTTTTGCCGACTTTTTAGATGAGTCAGTCAAAAGACTCGTTGATATTGCAGATCCTAGTTCTAAGATTGAGAGAAACCATATTGATGCACCAAGCCACTACCATTGTCCAATACTTCAGGAAATCATGGACGACCCACACATTTTTGCCGATGGCTTTACTTATGAGTACAGAGCAATCAAAGCATGGCTTGACAAACACAACGTATCCCCAGTGACAAGGCTTAGACTTCAGCATTCAGAGTTAACTCCTAACCATACATTGCGTTCAGCCATACAAGAATGGGGTCACGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr U-box Usp

Protein Analysis

481

Amino Acids

54.64

Weight (kDa)

5.84

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	189 - 370	3.5e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	191 - 364	4.5e-21	Protein tyrosine and serine/threonine kinase
U-box	PF04564	412 - 477	3.6e-17	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19410 AT2G19410 AT2G19410 AT5G57035
fragaria_vesca	FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970 FvH4_1g07970
malus_domestica	MD02G1084100.v1.1
prunus_persica	Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1 Prupe.7G205400_v2.0.a1
pyrus_communis	pycom02g06680 pycom02g06690
rosa_chinensis	RchiOBHm_Chr1g0330911 RchiOBHm_Chr2g0093881 RchiOBHm_Chr2g0094001 RchiOBHm_Chr7g0232521
rosa_laevigata	RLG00000001329 RLG00000016442 RLG00000016444
rosa_multiflora	Rmu_sc0003027.1_g000005 Rmu_sc0017523.1_g000016 Rmu_ssc0000369.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147570 Rroxscaffold_2G00147700
rosa_rugosa	Rorug02G0040200 Rorug02G0040300
rosa_samantha	Rh2AG086900 Rh2AG087700 Rh2BG087700 Rh2CG090000 Rh2DG085600 Rh2DG086700 Rh2DG086800 Rh3CG371600 Rh7CG448000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	1 cut(s)	1439
AciI	CCGC	1 cut(s)	799
AclWI	GGATC	4 cut(s)	78, 1004, 1017, 1193
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	4 cut(s)	48, 375, 1247, 1361
AfaI	GTAC	5 cut(s)	224, 249, 518, 971, 1316
AfiI	CCNNNNNNNGG	2 cut(s)	262, 740
AflIII	ACRYGT	2 cut(s)	38, 1437
AgsI	TTSAA	6 cut(s)	150, 179, 293, 323, 376, 854
AjnI	CCWGG	3 cut(s)	380, 747, 762
AluBI	AGCT	4 cut(s)	233, 244, 638, 694
AluI	AGCT	4 cut(s)	233, 244, 638, 694
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	1 cut(s)	563
Alw44I	GTGCAC	1 cut(s)	993
AlwI	GGATC	4 cut(s)	78, 1004, 1017, 1193
AoxI	GGCC	1 cut(s)	378
ApaLI	GTGCAC	1 cut(s)	993
ApeKI	GCWGC	3 cut(s)	314, 350, 362
ApoI	RAATTY	1 cut(s)	482
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	997
BamHI	GGATCC	1 cut(s)	1009
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	3 cut(s)	301, 337, 374
BccI	CCATC	2 cut(s)	823, 1292
BceAI	ACGGC	1 cut(s)	1112
BciT130I	CCWGG	3 cut(s)	382, 749, 764
BciVI	GTATCC	1 cut(s)	1363
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	632
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	2 cut(s)	63, 1203
BfuAI	ACCTGC	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	1363
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	3 cut(s)	315, 351, 363
BlsI	GCNGC	3 cut(s)	316, 352, 364
Bme1390I	CCNGG	4 cut(s)	382, 632, 749, 764
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	727, 1011
BmrFI	CCNGG	4 cut(s)	382, 632, 749, 764
BmrI	ACTGGG	1 cut(s)	1352
BmsI	GCATC	4 cut(s)	481, 649, 1108, 1222
BmuI	ACTGGG	1 cut(s)	1352
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	630, 824
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 740
Bse1I	ACTGG	2 cut(s)	1033, 1358
Bse3DI	GCAATG	1 cut(s)	1406
BseBI	CCWGG	3 cut(s)	382, 749, 764
BseDI	CCNNGG	2 cut(s)	630, 824
BseGI	GGATG	2 cut(s)	700, 1099
BseLI	CCNNNNNNNGG	2 cut(s)	262, 740
BseMI	GCAATG	1 cut(s)	1406
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	2 cut(s)	1033, 1358
BseRI	GAGGAG	2 cut(s)	410, 692
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	3 cut(s)	301, 337, 374
BsgI	GTGCAG	3 cut(s)	191, 216, 634
Bsh1236I	CGCG	1 cut(s)	1439
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	997
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	2 cut(s)	262, 740
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	929
BsmI	GAATGC	4 cut(s)	290, 316, 872, 1381
BsnI	GGCC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	6 cut(s)	7, 70, 622, 738, 1009, 1198
BspACI	CCGC	1 cut(s)	799
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	578
BspFNI	CGCG	1 cut(s)	1439
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	727, 1011
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	4 cut(s)	78, 1004, 1017, 1193
BspQI	GCTCTTC	2 cut(s)	234, 324
BsrDI	GCAATG	1 cut(s)	1406
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	1033, 1358
BssECI	CCNNGG	2 cut(s)	630, 824
BssMI	GATC	6 cut(s)	7, 70, 622, 738, 1009, 1198
BssT1I	CCWWGG	1 cut(s)	824
Bst2UI	CCWGG	3 cut(s)	382, 749, 764
Bst4CI	ACNGT	2 cut(s)	530, 832
Bst6I	CTCTTC	5 cut(s)	234, 298, 324, 351, 503
BstAUI	TGTACA	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	195, 870, 927
BstDEI	CTNAG	4 cut(s)	11, 565, 1209, 1370
BstF5I	GGATG	2 cut(s)	700, 1099
BstFNI	CGCG	1 cut(s)	1439
BstKTI	GATC	6 cut(s)	10, 73, 625, 741, 1012, 1201
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	6 cut(s)	7, 70, 622, 738, 1009, 1198
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 1328
BstNI	CCWGG	3 cut(s)	382, 749, 764
BstNSI	RCATGY	2 cut(s)	223, 254
BstSCI	CCNGG	4 cut(s)	380, 630, 747, 762
BstSLI	GKGCMC	1 cut(s)	997
BstUI	CGCG	1 cut(s)	1439
BstV1I	GCAGC	3 cut(s)	301, 337, 374
BstX2I	RGATCY	3 cut(s)	7, 1009, 1198
BstYI	RGATCY	3 cut(s)	7, 1009, 1198
BsuI	GTATCC	1 cut(s)	1363
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	700, 1099
BtsIMutI	CAGTG	1 cut(s)	1365
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	195, 870, 927
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	5 cut(s)	223, 248, 517, 970, 1315
CspCI	CAANNNNNGTGG	2 cut(s)	1232, 1267
CviAII	CATG	7 cut(s)	74, 220, 251, 504, 1006, 1273, 1332
CviQI	GTAC	5 cut(s)	223, 248, 517, 970, 1315
DdeI	CTNAG	4 cut(s)	11, 565, 1209, 1370
DpnI	GATC	6 cut(s)	9, 72, 624, 740, 1011, 1200
DpnII	GATC	6 cut(s)	7, 70, 622, 738, 1009, 1198
Eam1104I	CTCTTC	5 cut(s)	234, 298, 324, 351, 503
EarI	CTCTTC	5 cut(s)	234, 298, 324, 351, 503
Eco130I	CCWWGG	1 cut(s)	824
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	4 cut(s)	48, 375, 1247, 1361
EcoRII	CCWGG	3 cut(s)	380, 747, 762
EcoT14I	CCWWGG	1 cut(s)	824
ErhI	CCWWGG	1 cut(s)	824
FaeI	CATG	7 cut(s)	77, 223, 254, 507, 1009, 1276, 1335
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 1320, 1352
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	7 cut(s)	73, 219, 250, 503, 1005, 1272, 1331
FauNDI	CATATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	3 cut(s)	315, 351, 363
FokI	GGATG	2 cut(s)	687, 1086
Fsp4HI	GCNGC	3 cut(s)	315, 351, 363
FspBI	CTAG	2 cut(s)	63, 1203
GluI	GCNGC	3 cut(s)	315, 351, 363
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	632
Hin1II	CATG	7 cut(s)	77, 223, 254, 507, 1009, 1276, 1335
HincII	GTYRAC	2 cut(s)	468, 1392
HindII	GTYRAC	2 cut(s)	468, 1392
HinfI	GANTC	5 cut(s)	82, 464, 977, 1169, 1182
HpaI	GTTAAC	1 cut(s)	1392
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	4 cut(s)	468, 607, 995, 1392
Hpy188I	TCNGA	9 cut(s)	7, 28, 90, 283, 568, 687, 1023, 1051, 1387
Hpy188III	TCNNGA	6 cut(s)	74, 620, 734, 841, 1013, 1265
Hpy8I	GTNNAC	4 cut(s)	468, 607, 995, 1392
HpyAV	CCTTC	3 cut(s)	370, 529, 581
HpyCH4III	ACNGT	2 cut(s)	530, 832
HpyCH4IV	ACGT	3 cut(s)	40, 918, 1350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 1328
HpyF3I	CTNAG	4 cut(s)	11, 565, 1209, 1370
HpySE526I	ACGT	3 cut(s)	40, 918, 1350
Hsp92II	CATG	7 cut(s)	77, 223, 254, 507, 1009, 1276, 1335
Ksp22I	TGATCA	1 cut(s)	622
KspAI	GTTAAC	1 cut(s)	1392
Kzo9I	GATC	6 cut(s)	7, 70, 622, 738, 1009, 1198
LguI	GCTCTTC	2 cut(s)	234, 324
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	3 cut(s)	301, 337, 374
LweI	GCATC	4 cut(s)	481, 649, 1108, 1222
MaeI	CTAG	2 cut(s)	63, 1203
MaeII	ACGT	3 cut(s)	40, 918, 1350
MaeIII	GTNAC	3 cut(s)	506, 1360, 1433
MalI	GATC	6 cut(s)	9, 72, 624, 740, 1011, 1200
MboI	GATC	6 cut(s)	7, 70, 622, 738, 1009, 1198
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	3 cut(s)	7, 1009, 1198
MhlI	GDGCHC	1 cut(s)	997
MluI	ACGCGT	1 cut(s)	1437
MlyI	GAGTC	3 cut(s)	473, 1176, 1178
MmeI	TCCRAC	2 cut(s)	292, 1105
MseI	TTAA	3 cut(s)	449, 642, 1391
MslI	CAYNNNNRTG	1 cut(s)	1230
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	4 cut(s)	382, 632, 749, 764
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	4 cut(s)	290, 316, 872, 1381
MvaI	CCWGG	3 cut(s)	382, 749, 764
MvnI	CGCG	1 cut(s)	1439
MwoI	GCNNNNNNNGC	2 cut(s)	359, 1328
NciI	CCSGG	1 cut(s)	632
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	6 cut(s)	7, 70, 622, 738, 1009, 1198
NlaIII	CATG	7 cut(s)	77, 223, 254, 507, 1009, 1276, 1335
NlaIV	GGNNCC	2 cut(s)	727, 1011
NmuCI	GTSAC	3 cut(s)	506, 1360, 1433
NspI	RCATGY	2 cut(s)	223, 254
PagI	TCATGA	1 cut(s)	73
PciSI	GCTCTTC	2 cut(s)	234, 324
PctI	GAATGC	4 cut(s)	290, 316, 872, 1381
PfeI	GAWTC	2 cut(s)	82, 977
PkrI	GCNGC	3 cut(s)	316, 352, 364
PleI	GAGTC	3 cut(s)	472, 1176, 1177
PpsI	GAGTC	3 cut(s)	472, 1176, 1177
Ppu21I	YACGTR	1 cut(s)	41
Psp6I	CCWGG	3 cut(s)	380, 747, 762
PspGI	CCWGG	3 cut(s)	380, 747, 762
PspN4I	GGNNCC	2 cut(s)	727, 1011
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	3 cut(s)	7, 1009, 1198
RsaI	GTAC	5 cut(s)	224, 249, 518, 971, 1316
RsaNI	GTAC	5 cut(s)	223, 248, 517, 970, 1315
RseI	CAYNNNNRTG	1 cut(s)	1230
SalI	GTCGAC	1 cut(s)	466
SapI	GCTCTTC	2 cut(s)	234, 324
SaqAI	TTAA	3 cut(s)	449, 642, 1391
SatI	GCNGC	3 cut(s)	315, 351, 363
Sau3AI	GATC	6 cut(s)	7, 70, 622, 738, 1009, 1198
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	3 cut(s)	473, 1176, 1178
ScrFI	CCNGG	4 cut(s)	382, 632, 749, 764
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	4 cut(s)	481, 649, 1108, 1222
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	1230
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	1 cut(s)	799
SspMI	CTAG	2 cut(s)	63, 1203
StyD4I	CCNGG	4 cut(s)	380, 630, 747, 762
StyI	CCWWGG	1 cut(s)	824
TaaI	ACNGT	2 cut(s)	530, 832
TaiI	ACGT	3 cut(s)	43, 921, 1353
TaqI	TCGA	2 cut(s)	467, 652
TatI	WGTACW	3 cut(s)	222, 969, 1314
TfiI	GAWTC	2 cut(s)	82, 977
Tru1I	TTAA	3 cut(s)	449, 642, 1391
Tru9I	TTAA	3 cut(s)	449, 642, 1391
TscAI	CASTG	1 cut(s)	1365
TseFI	GTSAC	3 cut(s)	506, 1360, 1433
TseI	GCWGC	3 cut(s)	314, 350, 362
Tsp45I	GTSAC	3 cut(s)	506, 1360, 1433
TspDTI	ATGAA	1 cut(s)	771
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	1 cut(s)	1365
VneI	GTGCAC	1 cut(s)	993
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	2 cut(s)	223, 254
XcmI	CCANNNNNNNNNTGG	2 cut(s)	803, 822
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	2 cut(s)	63, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.