Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008043

Physical Location & Seq

Genomic Coordinates Forward (+)

57648360 .. 57650236

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG429100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGCAGCAGCTCTTCCAAGGCTGCCCTTCTCACCCCAACCCCAACCATTACACTCCAACACAAGAAAGATCATTTCAGGCTCAACACAAACCCACCACCCAGAATTTCCAAGAGAAATTTTGGGCGCCATGGGCTTTGTTTTGTGACAAGAGCTAAGGTTGGAGGAGATGTACTTGAGAAACAATCAGTTAGTGCTGAAGACAAGAAGGATTATGGCCTGGTTAGTCTCCACCATGTTGGAATCTTGTGTGAAAACTTGGAGAGGTCTCTCGACTTTTATCAGAACATTCTTGGTCTTGAAATTAATGAGGCTAGGCCAGATGACAAACTCCCCTATAGGGGGGCTTGGTTATGGGTGGGTTCTGAGATGATTTACCTTATGGAGCTTCCAAACCCCGACCCTCTAACCAGAAGACCGGAGCATGGAGGCCGTGATAGGCACACTTGTGTTGAGATTCGGGATGTGTCTAAGCTGAAAGCAATCCTTGATGAAGCTGGTATTCCATACACGCTTAGTAAGTCTGGGAGGCCAGCAATCTTTTTTCGAGATCCAGATGAAAATGCTCTGGAATTTTCACAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

195

Amino Acids

22.07

Weight (kDa)

7.77

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	77 - 192	3.4e-12	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	78 - 172	3.9e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57040
fragaria_vesca	FvH4_1g07980
malus_domestica	MD02G1084200.v1.1 MD15G1211500.v1.1
prunus_persica	Prupe.7G205300_v2.0.a1 Prupe.7G205300_v2.0.a1
pyrus_communis	pycom02g06700 pycom15g18810
rosa_chinensis	RchiOBHm_Chr2g0093891 RchiOBHm_Chr2g0094011
rosa_laevigata	RLG00000001330 RLG00000016443 RLG00000016445
rosa_multiflora	Rmu_sc0003027.1_g000004 Rmu_sc0017523.1_g000017
rosa_roxburghii	Rroxscaffold_2G00147560
rosa_rugosa	Rorug02G0040300
rosa_samantha	Rh2AG087000 Rh2BG087800 Rh2CG090100 Rh2DG085700 Rh2DG086900 Rh7AG429100 Rh7CG447900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	3 cut(s)	105, 118, 572
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	4 cut(s)	340, 341, 342, 425
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	219
AleI	CACNNNNGTG	1 cut(s)	447
AluBI	AGCT	5 cut(s)	12, 155, 388, 475, 497
AluI	AGCT	5 cut(s)	12, 155, 388, 475, 497
Alw26I	GTCTC	2 cut(s)	233, 273
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	4 cut(s)	217, 317, 430, 530
ApeKI	GCWGC	3 cut(s)	6, 9, 23
ApoI	RAATTY	3 cut(s)	105, 118, 572
AseI	ATTAAT	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	207, 421
BbvI	GCAGC	3 cut(s)	10, 18, 21
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	233, 273
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	3 cut(s)	7, 10, 24
BlsI	GCNGC	3 cut(s)	8, 11, 25
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	207, 421
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	18, 130
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 341, 342, 425
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	18, 130
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	4 cut(s)	340, 341, 342, 425
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	10, 18, 21
BshFI	GGCC	4 cut(s)	219, 319, 432, 532
BshNI	GGYRCC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	419
BslI	CCNNNNNNNGG	4 cut(s)	340, 341, 342, 425
BsmAI	GTCTC	2 cut(s)	233, 273
BsnI	GGCC	4 cut(s)	219, 319, 432, 532
Bso31I	GGTCTC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	70, 550
Bsp19I	CCATGG	1 cut(s)	130
BspANI	GGCC	4 cut(s)	219, 319, 432, 532
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	545
BspQI	GCTCTTC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	18, 130
BssMI	GATC	2 cut(s)	70, 550
BssNI	GRCGYC	1 cut(s)	127
BssT1I	CCWWGG	2 cut(s)	18, 130
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	582
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	4 cut(s)	156, 366, 471, 515
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	469
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	73, 553
BstMAI	GTCTC	2 cut(s)	233, 273
BstMBI	GATC	2 cut(s)	70, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	10, 18, 21
BstV2I	GAAGAC	2 cut(s)	207, 421
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	4 cut(s)	219, 319, 432, 532
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	534
CfoI	GCGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	3 cut(s)	131, 236, 425
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	4 cut(s)	156, 366, 471, 515
DinI	GGCGCC	1 cut(s)	128
DpnI	GATC	2 cut(s)	72, 552
DpnII	GATC	2 cut(s)	70, 550
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	18, 130
Eco31I	GGTCTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	18, 130
EgeI	GGCGCC	1 cut(s)	128
EheI	GGCGCC	1 cut(s)	128
ErhI	CCWWGG	2 cut(s)	18, 130
FaeI	CATG	3 cut(s)	134, 239, 428
FaiI	YATR	8 cut(s)	132, 216, 237, 339, 355, 383, 426, 508
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	3 cut(s)	130, 235, 424
Fnu4HI	GCNGC	3 cut(s)	7, 10, 24
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	7, 10, 24
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	3 cut(s)	7, 10, 24
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	4 cut(s)	219, 319, 432, 532
HapII	CCGG	1 cut(s)	419
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	134, 239, 428
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	243, 457
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	285, 367, 587
Hpy188III	TCNNGA	6 cut(s)	272, 299, 461, 548, 554, 569
HpyAV	CCTTC	2 cut(s)	38, 202
HpyCH4III	ACNGT	1 cut(s)	582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	4 cut(s)	156, 366, 471, 515
Hsp92I	GRCGYC	1 cut(s)	127
Hsp92II	CATG	3 cut(s)	134, 239, 428
HspAI	GCGC	1 cut(s)	127
KasI	GGCGCC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	70, 550
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	385, 421
Lsp1109I	GCAGC	3 cut(s)	10, 18, 21
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	72, 552
MboI	GATC	2 cut(s)	70, 550
MboII	GAAGA	3 cut(s)	6, 212, 426
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	4 cut(s)	105, 118, 303, 572
Mly113I	GGCGCC	1 cut(s)	127
MmeI	TCCRAC	3 cut(s)	82, 142, 220
MnlI	CCTC	6 cut(s)	158, 258, 304, 414, 422, 522
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	2 cut(s)	70, 550
NlaIII	CATG	3 cut(s)	134, 239, 428
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	243, 457
PkrI	GCNGC	3 cut(s)	8, 11, 25
PluTI	GGCGCC	1 cut(s)	130
PshBI	ATTAAT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	7, 10, 24
Sau3AI	GATC	2 cut(s)	70, 550
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	8 cut(s)	14, 157, 162, 269, 381, 390, 477, 499
SfcI	CTRYAG	1 cut(s)	337
SfoI	GGCGCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	105, 118, 303, 572
SspDI	GGCGCC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	18, 130
TaaI	ACNGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	273, 547
TasI	AATT	4 cut(s)	105, 118, 303, 572
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	243, 457
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	6, 9, 23
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	507, 573
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	3 cut(s)	105, 118, 572
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.