Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003027.1

Orthogroup ID

OG0008043

Physical Location & Seq

Genomic Coordinates Forward (+)

28166 .. 29607

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003027.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcttcccttcttaccccaaccccaaccgttgcactccaacgcaagaaagatcatttcaggctcaacacaaacccatcatccagaatttcccagaaaaattttgggcgccatggggtttgttttgtaacaaaagcgaaggttggaggagatgtacttgagaaacaatcagttagtgctgaggacaagaaggattatggactagttagtctccaccatgttggaatcttgtgtcaaaacttggagaggtcgctcgacttttatcagaacattcttggtcttgaaataaatgaggctaggccagatgacaaactcccctataggggggcttggttatgggtgggttctgagatgattcaccttatggagcttcccaatcctgaccctctaactggaagacctgagcatggaggccgtgataggcacacttgtgttgagattcgggatgtgtctaagctgaaagcaatccttgatgaagctggtattccatacacgcttagtaagtctgggaggccagcaatcttttttcgagatccagatgaaaatgctctggaatttgcacagttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

189

Amino Acids

21.26

Weight (kDa)

7.06

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57040
fragaria_vesca	FvH4_1g07980
malus_domestica	MD02G1084200.v1.1 MD15G1211500.v1.1
prunus_persica	Prupe.7G205300_v2.0.a1 Prupe.7G205300_v2.0.a1
pyrus_communis	pycom02g06700 pycom15g18810
rosa_chinensis	RchiOBHm_Chr2g0093891 RchiOBHm_Chr2g0094011
rosa_laevigata	RLG00000001330 RLG00000016443 RLG00000016445
rosa_multiflora	Rmu_sc0003027.1_g000004 Rmu_sc0017523.1_g000017
rosa_roxburghii	Rroxscaffold_2G00147560
rosa_rugosa	Rorug02G0040300
rosa_samantha	Rh2AG087000 Rh2BG087800 Rh2CG090100 Rh2DG085700 Rh2DG086900 Rh7AG429100 Rh7CG447900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	3 cut(s)	87, 100, 554
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	5 cut(s)	322, 323, 324, 392, 407
AgsI	TTSAA	1 cut(s)	284
AhlI	ACTAGT	1 cut(s)	202
AleI	CACNNNNGTG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	370, 457, 479
AluI	AGCT	3 cut(s)	370, 457, 479
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	527
AoxI	GGCC	3 cut(s)	299, 412, 512
ApoI	RAATTY	3 cut(s)	87, 100, 554
AspLEI	GCGC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	403
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	215
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	2 cut(s)	203, 297
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	403
Bpu10I	CCTNAGC	2 cut(s)	180, 402
BpuEI	CTTGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	5 cut(s)	322, 323, 324, 392, 407
Bse1I	ACTGG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	80, 451
BseLI	CCNNNNNNNGG	5 cut(s)	322, 323, 324, 392, 407
BseMII	CTCAG	3 cut(s)	171, 339, 393
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	301, 414, 514
BshNI	GGYRCC	1 cut(s)	108
BslI	CCNNNNNNNGG	5 cut(s)	322, 323, 324, 392, 407
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	301, 414, 514
Bsp143I	GATC	2 cut(s)	52, 532
Bsp19I	CCATGG	1 cut(s)	112
BspANI	GGCC	3 cut(s)	301, 414, 514
BspCNI	CTCAG	3 cut(s)	172, 340, 394
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	52, 532
BssNI	GRCGYC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	2 cut(s)	31, 564
BstACI	GRCGYC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	5 cut(s)	180, 348, 402, 453, 497
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	80, 451
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	55, 535
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	52, 532
BstSFI	CTRYAG	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	301, 414, 514
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	80, 451
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	3 cut(s)	113, 218, 407
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	5 cut(s)	180, 348, 402, 453, 497
DinI	GGCGCC	1 cut(s)	110
DpnI	GATC	2 cut(s)	54, 534
DpnII	GATC	2 cut(s)	52, 532
DrdI	GACNNNNNNGTC	1 cut(s)	207
DseDI	GACNNNNNNGTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	110
EheI	GGCGCC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	3 cut(s)	116, 221, 410
FaiI	YATR	8 cut(s)	114, 198, 219, 321, 337, 365, 408, 490
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FatI	CATG	3 cut(s)	112, 217, 406
FokI	GGATG	2 cut(s)	67, 458
FspBI	CTAG	2 cut(s)	203, 297
GlaI	GCGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	301, 414, 514
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	116, 221, 410
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	225, 355, 439
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	3 cut(s)	267, 349, 569
Hpy188III	TCNNGA	7 cut(s)	84, 281, 380, 443, 530, 536, 551
HpyAV	CCTTC	3 cut(s)	20, 133, 184
HpyCH4III	ACNGT	2 cut(s)	31, 564
HpyCH4V	TGCA	2 cut(s)	35, 560
HpyF3I	CTNAG	5 cut(s)	180, 348, 402, 453, 497
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	116, 221, 410
HspAI	GCGC	1 cut(s)	109
KasI	GGCGCC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	52, 532
LmnI	GCTCC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	203, 297
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	54, 534
MboI	GATC	2 cut(s)	52, 532
MboII	GAAGA	1 cut(s)	408
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	3 cut(s)	87, 100, 554
Mly113I	GGCGCC	1 cut(s)	109
MmeI	TCCRAC	3 cut(s)	64, 124, 202
MnlI	CCTC	7 cut(s)	140, 175, 240, 286, 396, 404, 504
MslI	CAYNNNNRTG	1 cut(s)	429
NarI	GGCGCC	1 cut(s)	109
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	2 cut(s)	52, 532
NlaIII	CATG	3 cut(s)	116, 221, 410
NlaIV	GGNNCC	1 cut(s)	110
OliI	CACNNNNGTG	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	225, 355, 439
PluTI	GGCGCC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	52, 532
SetI	ASST	7 cut(s)	144, 251, 363, 372, 403, 459, 481
SfcI	CTRYAG	1 cut(s)	319
SfoI	GGCGCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SpeI	ACTAGT	1 cut(s)	202
Sse9I	AATT	3 cut(s)	87, 100, 554
SspDI	GGCGCC	1 cut(s)	108
SspMI	CTAG	2 cut(s)	203, 297
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	31, 564
TaqI	TCGA	2 cut(s)	255, 529
TasI	AATT	3 cut(s)	87, 100, 554
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	225, 355, 439
TspDTI	ATGAA	2 cut(s)	489, 555
XapI	RAATTY	3 cut(s)	87, 100, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	203, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.