Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008043

Physical Location & Seq

Genomic Coordinates Reverse (-)

6736737 .. 6737917

Gene Structure 1181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG086900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGCAGCAGCTCTTCCATGGCTTCCCTTCTCACCCCAACCCCAACCCCAACCCCAACCATTACACTCCAACACAAGAAAGATCATTTCAGGCTCAACATAAACCCACCATCCAGAATTTCCAAGAGAAATTTTGGGCGCCATGGGCTTTGTTTTGTGACAAGAGCTAAGGTTGGAGGAGATGTACTTGAGAAACAATCAGTTAGTGCTGAAGACAAGAAGGATTATGGCCTGGTTAGTCTCCACCATGTTGGAATCTTGTGTGAAAACTTGGAGAGGTCGCTCGACTTTTATCAGAACATCCTTGGTCTTGAAATTAATGAGGCTAGGCCAGATGACAAACTCCCCTATAGGGGGGCTTGGTTATGGGTGGGTTCTGAGATGATTCACCTTATGGAGCTTCCAAACCCCGACCCTCTAACCGGAAGACCGGAGCATGGAGGCCGTGATAGGCACACTTGTGTTGAGATTCGGGATGTGTCTAAGCTGAAAGCAATCCTTGATGAAGCTGGTATTCCATACACGCTTAGTAAGTCTGGGAGGCCAGCAATCTTTTTTCGAGATCCAGATGAAAATGCTCTGGAATTTGCACAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

199

Amino Acids

22.35

Weight (kDa)

6.71

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	81 - 196	5.3e-13	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	82 - 176	7.8e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57040
fragaria_vesca	FvH4_1g07980
malus_domestica	MD02G1084200.v1.1 MD15G1211500.v1.1
prunus_persica	Prupe.7G205300_v2.0.a1 Prupe.7G205300_v2.0.a1
pyrus_communis	pycom02g06700 pycom15g18810
rosa_chinensis	RchiOBHm_Chr2g0093891 RchiOBHm_Chr2g0094011
rosa_laevigata	RLG00000001330 RLG00000016443 RLG00000016445
rosa_multiflora	Rmu_sc0003027.1_g000004 Rmu_sc0017523.1_g000017
rosa_roxburghii	Rroxscaffold_2G00147560
rosa_rugosa	Rorug02G0040300
rosa_samantha	Rh2AG087000 Rh2BG087800 Rh2CG090100 Rh2DG085700 Rh2DG086900 Rh7AG429100 Rh7CG447900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	3 cut(s)	117, 130, 584
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	5 cut(s)	352, 353, 354, 422, 437
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	231
AleI	CACNNNNGTG	1 cut(s)	459
AluBI	AGCT	5 cut(s)	12, 167, 400, 487, 509
AluI	AGCT	5 cut(s)	12, 167, 400, 487, 509
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	4 cut(s)	229, 329, 442, 542
ApeKI	GCWGC	2 cut(s)	6, 9
ApoI	RAATTY	3 cut(s)	117, 130, 584
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	25, 380
BanI	GGYRCC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	219, 433
BbvI	GCAGC	2 cut(s)	18, 21
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	2 cut(s)	7, 10
BlsI	GCNGC	2 cut(s)	8, 11
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	233
BpiI	GAAGAC	2 cut(s)	219, 433
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	3 cut(s)	18, 142, 304
BsaWI	WCCGGW	2 cut(s)	422, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	5 cut(s)	352, 353, 354, 422, 437
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	18, 142, 304
BseGI	GGATG	3 cut(s)	110, 300, 481
BseLI	CCNNNNNNNGG	5 cut(s)	352, 353, 354, 422, 437
BseMII	CTCAG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	18, 21
BshFI	GGCC	4 cut(s)	231, 331, 444, 544
BshNI	GGYRCC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	423, 431
BslI	CCNNNNNNNGG	5 cut(s)	352, 353, 354, 422, 437
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	4 cut(s)	231, 331, 444, 544
Bsp143I	GATC	2 cut(s)	82, 562
Bsp19I	CCATGG	2 cut(s)	18, 142
BspANI	GGCC	4 cut(s)	231, 331, 444, 544
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	557
BspQI	GCTCTTC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	138
BssECI	CCNNGG	3 cut(s)	18, 142, 304
BssMI	GATC	2 cut(s)	82, 562
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	3 cut(s)	18, 142, 304
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	594
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	4 cut(s)	168, 378, 483, 527
BstDSI	CCRYGG	2 cut(s)	18, 142
BstF5I	GGATG	3 cut(s)	110, 300, 481
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	85, 565
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	82, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	18, 21
BstV2I	GAAGAC	2 cut(s)	219, 433
BstX2I	RGATCY	1 cut(s)	562
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	4 cut(s)	231, 331, 444, 544
BtgI	CCRYGG	2 cut(s)	18, 142
BtsCI	GGATG	3 cut(s)	110, 300, 481
Cac8I	GCNNGC	1 cut(s)	546
CfoI	GCGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	4 cut(s)	19, 143, 248, 437
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	4 cut(s)	168, 378, 483, 527
DinI	GGCGCC	1 cut(s)	140
DpnI	GATC	2 cut(s)	84, 564
DpnII	GATC	2 cut(s)	82, 562
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	3 cut(s)	18, 142, 304
Eco57I	CTGAAG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	3 cut(s)	18, 142, 304
EgeI	GGCGCC	1 cut(s)	140
EheI	GGCGCC	1 cut(s)	140
ErhI	CCWWGG	3 cut(s)	18, 142, 304
FaeI	CATG	4 cut(s)	22, 146, 251, 440
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	4 cut(s)	18, 142, 247, 436
Fnu4HI	GCNGC	2 cut(s)	7, 10
FokI	GGATG	3 cut(s)	97, 287, 488
Fsp4HI	GCNGC	2 cut(s)	7, 10
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	7, 10
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	231, 331, 444, 544
HapII	CCGG	2 cut(s)	423, 431
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	4 cut(s)	22, 146, 251, 440
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	3 cut(s)	255, 385, 469
HpaII	CCGG	2 cut(s)	423, 431
HphI	GGTGA	2 cut(s)	25, 380
Hpy188I	TCNGA	3 cut(s)	297, 379, 599
Hpy188III	TCNNGA	6 cut(s)	114, 311, 473, 560, 566, 581
HpyAV	CCTTC	2 cut(s)	38, 214
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4V	TGCA	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	4 cut(s)	168, 378, 483, 527
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	22, 146, 251, 440
HspAI	GCGC	1 cut(s)	139
KasI	GGCGCC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	82, 562
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	397, 433
Lsp1109I	GCAGC	2 cut(s)	18, 21
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	84, 564
MboI	GATC	2 cut(s)	82, 562
MboII	GAAGA	3 cut(s)	6, 224, 438
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	4 cut(s)	117, 130, 315, 584
Mly113I	GGCGCC	1 cut(s)	139
MmeI	TCCRAC	3 cut(s)	94, 154, 232
MnlI	CCTC	6 cut(s)	170, 270, 316, 426, 434, 534
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	2 cut(s)	423, 431
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	145
NarI	GGCGCC	1 cut(s)	139
NcoI	CCATGG	2 cut(s)	18, 142
NdeII	GATC	2 cut(s)	82, 562
NlaIII	CATG	4 cut(s)	22, 146, 251, 440
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	255, 385, 469
PkrI	GCNGC	2 cut(s)	8, 11
PluTI	GGCGCC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	7, 10
Sau3AI	GATC	2 cut(s)	82, 562
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	8 cut(s)	14, 169, 174, 281, 393, 402, 489, 511
SfcI	CTRYAG	1 cut(s)	349
SfoI	GGCGCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	117, 130, 315, 584
SspDI	GGCGCC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	3 cut(s)	18, 142, 304
TaaI	ACNGT	1 cut(s)	594
TaqI	TCGA	2 cut(s)	285, 559
TasI	AATT	4 cut(s)	117, 130, 315, 584
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	3 cut(s)	255, 385, 469
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	6, 9
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	519, 585
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	3 cut(s)	117, 130, 584
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.