RchiOBHm_Chr2g0094011
ERF Family

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008043
Physical Location & Seq
Reverse (-)
7080288 .. 7081997
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46904

Sequence Viewer

Length: 702 bp
ATGAGCAGCAGCTCTTCCATGGCTTCCCTTCTCACCCCAACCCCAACCCCAACCCCAACCATTACACTCCAACACAAGAAAGATCATTTCAGGCTCAACATAAACCCACCATCCAGAATTTCCAAGAGAAATTTTGGGCGCCATGGGCTTTGTTTTGTGACAAGAGCTAAGGTTGGAGGAGATGTACTTGAGAAACAATCAGTTAGTGCTGAAGACAAGAAGGATTATGGCCTGGTTAGTCTCCACCATGTTGGAATCTTGTGTGAAAACTTGGAGAGGTCGCTCGACTTTTATCAGAACATCCTTGGTCTTGAAATTAATGAGGCTAGGCCAGATGACAAACTCCCCTATAGGGGGGCTTGGTTATGGGTGGGTTCTGAGATGATTCACCTTATGGAGCTTCCAAACCCCGACCCTCTAACCGGAAGACCGGAGCATGGAGGCCGTGATAGGCACACTTGTGTTGAGATTCGGGATGTGTCTAAGCTGAAAGCAATCCTTGATGAAGCTGGCAAGCTTTTATTTTCTCATCTGAAGTTCTTTTCATATGTGAATGATTTTGGAAGGAATGCTGATTGGTTTACTTTGCAATTATCTATACTGCAGGTATTCCATACACGCTTAGTAAGTCTGGGAGGCCAGCAATCTTTTTTCGAGATCCAGATGAAAATGCTCTGGAATTTGCACAGTTCTGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

233

Amino Acids

26.44

Weight (kDa)

7.82

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxalase PF00903 81 - 170 3.2e-09 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 595
AccB1I GGYRCC 1 cut(s) 138
AclWI GGATC 1 cut(s) 652
AcsI RAATTY 3 cut(s) 117, 130, 679
AcuI CTGAAG 2 cut(s) 231, 554
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 5 cut(s) 352, 353, 354, 422, 437
AgsI TTSAA 1 cut(s) 314
AjnI CCWGG 1 cut(s) 231
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 6 cut(s) 12, 167, 400, 487, 509, 517
AluI AGCT 6 cut(s) 12, 167, 400, 487, 509, 517
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 652
AoxI GGCC 4 cut(s) 229, 329, 442, 637
ApeKI GCWGC 2 cut(s) 6, 9
ApoI RAATTY 3 cut(s) 117, 130, 679
AseI ATTAAT 1 cut(s) 318
AspLEI GCGC 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 25, 380
BanI GGYRCC 1 cut(s) 138
BbsI GAAGAC 2 cut(s) 219, 433
BbvI GCAGC 2 cut(s) 18, 21
BccI CCATC 2 cut(s) 118, 689
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 349, 602
BfoI RGCGCY 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 2 cut(s) 7, 10
BlsI GCNGC 2 cut(s) 8, 11
Bme1390I CCNGG 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 233
BpiI GAAGAC 2 cut(s) 219, 433
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 18, 142, 304
BsaWI WCCGGW 2 cut(s) 422, 430
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 5 cut(s) 352, 353, 354, 422, 437
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 18, 142, 304
BseGI GGATG 3 cut(s) 110, 300, 481
BseLI CCNNNNNNNGG 5 cut(s) 352, 353, 354, 422, 437
BseMII CTCAG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 18, 21
BshFI GGCC 4 cut(s) 231, 331, 444, 639
BshNI GGYRCC 1 cut(s) 138
BsiSI CCGG 2 cut(s) 423, 431
BslI CCNNNNNNNGG 5 cut(s) 352, 353, 354, 422, 437
BsmAI GTCTC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 4 cut(s) 231, 331, 444, 639
Bsp143I GATC 2 cut(s) 82, 657
Bsp19I CCATGG 2 cut(s) 18, 142
BspANI GGCC 4 cut(s) 231, 331, 444, 639
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 606
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 1 cut(s) 652
BspQI GCTCTTC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 18, 142, 304
BssMI GATC 2 cut(s) 82, 657
BssNI GRCGYC 1 cut(s) 139
BssT1I CCWWGG 3 cut(s) 18, 142, 304
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 689
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 139
BstC8I GCNNGC 3 cut(s) 511, 515, 641
BstDEI CTNAG 4 cut(s) 168, 378, 483, 622
BstDSI CCRYGG 2 cut(s) 18, 142
BstF5I GGATG 3 cut(s) 110, 300, 481
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 2 cut(s) 85, 660
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 82, 657
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 2 cut(s) 349, 602
BstV1I GCAGC 2 cut(s) 18, 21
BstV2I GAAGAC 2 cut(s) 219, 433
BstX2I RGATCY 1 cut(s) 657
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 657
BsuRI GGCC 4 cut(s) 231, 331, 444, 639
BtgI CCRYGG 2 cut(s) 18, 142
BtsCI GGATG 3 cut(s) 110, 300, 481
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 3 cut(s) 511, 515, 641
CfoI GCGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 185
CviAII CATG 4 cut(s) 19, 143, 248, 437
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 4 cut(s) 168, 378, 483, 622
DinI GGCGCC 1 cut(s) 140
DpnI GATC 2 cut(s) 84, 659
DpnII GATC 2 cut(s) 82, 657
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 3 cut(s) 18, 142, 304
Eco57I CTGAAG 2 cut(s) 231, 554
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 3 cut(s) 18, 142, 304
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
ErhI CCWWGG 3 cut(s) 18, 142, 304
FaeI CATG 4 cut(s) 22, 146, 251, 440
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 4 cut(s) 18, 142, 247, 436
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 7, 10
FokI GGATG 3 cut(s) 97, 287, 488
Fsp4HI GCNGC 2 cut(s) 7, 10
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 140
GluI GCNGC 2 cut(s) 7, 10
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 4 cut(s) 231, 331, 444, 639
HapII CCGG 2 cut(s) 423, 431
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 4 cut(s) 22, 146, 251, 440
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 3 cut(s) 255, 385, 469
HpaII CCGG 2 cut(s) 423, 431
HphI GGTGA 2 cut(s) 25, 380
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 4 cut(s) 297, 379, 534, 694
Hpy188III TCNNGA 6 cut(s) 114, 311, 473, 655, 661, 676
Hpy8I GTNNAC 1 cut(s) 582
HpyAV CCTTC 3 cut(s) 38, 214, 558
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4V TGCA 3 cut(s) 589, 604, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 4 cut(s) 168, 378, 483, 622
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 4 cut(s) 22, 146, 251, 440
HspAI GCGC 1 cut(s) 139
KasI GGCGCC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 82, 657
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 397, 433
Lsp1109I GCAGC 2 cut(s) 18, 21
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 84, 659
MboI GATC 2 cut(s) 82, 657
MboII GAAGA 3 cut(s) 6, 224, 438
MflI RGATCY 1 cut(s) 657
MluCI AATT 5 cut(s) 117, 130, 315, 590, 679
Mly113I GGCGCC 1 cut(s) 139
MmeI TCCRAC 3 cut(s) 94, 154, 232
MnlI CCTC 6 cut(s) 170, 270, 316, 426, 434, 629
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 2 cut(s) 423, 431
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 145
NarI GGCGCC 1 cut(s) 139
NcoI CCATGG 2 cut(s) 18, 142
NdeI CATATG 1 cut(s) 547
NdeII GATC 2 cut(s) 82, 657
NlaIII CATG 4 cut(s) 22, 146, 251, 440
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 19
PctI GAATGC 1 cut(s) 574
PfeI GAWTC 3 cut(s) 255, 385, 469
PkrI GCNGC 2 cut(s) 8, 11
PluTI GGCGCC 1 cut(s) 142
PshBI ATTAAT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 140
PstI CTGCAG 1 cut(s) 606
PsuI RGATCY 1 cut(s) 657
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 7, 10
Sau3AI GATC 2 cut(s) 82, 657
ScrFI CCNGG 1 cut(s) 233
SfcI CTRYAG 2 cut(s) 349, 602
SfoI GGCGCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 5 cut(s) 117, 130, 315, 590, 679
SspDI GGCGCC 1 cut(s) 138
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 3 cut(s) 18, 142, 304
TaaI ACNGT 1 cut(s) 689
TaqI TCGA 2 cut(s) 285, 654
TasI AATT 5 cut(s) 117, 130, 315, 590, 679
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 3 cut(s) 255, 385, 469
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 6, 9
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 519, 534, 680
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 3 cut(s) 117, 130, 679
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.